F273610

General Info

Members Datasets Scaffolds Average Seq Length
179 108 164 205

Family's Representative Sequence

Representative Sequence 3300006195|Ga0075366_10319311|Ga0075366_103193112
Length 214
Sequence MITLKSKVMFSHLKNIETAFKHIRQFSLFLIIGNVLTMGFCIYKTTQVVNAAQNRVHILYNGKLLEASASDRKSNLPVELRDHIRTFHEYFFDLSPDDKAIQANVNKALYLADESAKREYDNLREAGYYNNLISANISQEIHVDSTRLNGNQWPYNFTCYATEKLVRSSGTVYRKLVTQGEIRDLAEQSDNNPHGFLIQHWEVLANRDTTIINK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
4 2738541283 Pedobacter sp. OK701 Isolate Unclassified
5 2738543023 Pedobacter sp. OK628 Isolate Unclassified
6 2739367663 Pedobacter sp. YR510 Isolate Unclassified
7 2818991437 Pedobacter terrae 518 Isolate Unclassified
8 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
9 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
10 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
11 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
12 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
13 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
14 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
15 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
16 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
17 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
18 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
19 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
20 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
21 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
22 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
23 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
24 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
25 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
26 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
27 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
28 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
29 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
30 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
31 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
32 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
33 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
34 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
37 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
38 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
39 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
53 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
54 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
56 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
57 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
58 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
79 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
80 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
81 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
82 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
87 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
88 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
89 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
90 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
91 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
94 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
95 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
96 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
97 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
98 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
102 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
103 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
104 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
105 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
106 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
107 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
108 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.62
Metatranscriptomes 0
Isolates 8.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.41
Nodule 0
Rhizoplane 1.68
Rhizosphere 69.27
Stem 0
Stem Tuber 0
Unclassified 15.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1596339 2162886007 Bacteria 98699
2 SwRhRL2b_contig_2418591 2162886007 Bacteria 39679
3 JGI24736J21556_1008940 3300001904 Bacteria 1659
4 JGI24737J22298_10003187 3300001990 Bacteria 5819
5 JGI24735J21928_10000005 3300002067 Bacteria 356755
6 JGI25162J39368_1000672 3300002737 Bacteria 24058
7 rootH1_10048761 3300003316 Bacteria 1448
8 rootH1_10065506 3300003316 Bacteria 2696
9 rootH2_10000153 3300003320 Bacteria 80161
10 rootH2_10001891 3300003320 Bacteria 464318
11 rootH2_10004159 3300003320 Bacteria 10338
12 rootL2_10290250 3300003322 Unclassified 2882
13 rootH1_10000566 3300003316 Bacteria 33162
14 rootH1_10000566 3300003323 Bacteria 205679
15 rootH1_10236532 3300003323 Bacteria 4112
16 rootH1_10363444 3300003323 Bacteria 3601
17 Ga0055536_1000008 3300003781 Bacteria 335729
18 Ga0055530_10000052 3300003791 Bacteria 104501
19 Ga0055530_10002222 3300003791 Bacteria 12807
20 Ga0055531_10022927 3300003794 Bacteria 2361
21 Ga0065714_10015329 3300005288 Bacteria 2862
22 Ga0065714_10064434 3300005288 Bacteria 130989
23 Ga0065714_10064854 3300005288 Bacteria 16979
24 Ga0065714_10071892 3300005288 Bacteria 3473
25 Ga0065714_10151514 3300005288 Bacteria 1103
26 Ga0065714_10236964 3300005288 Bacteria 803
27 Ga0065704_10070168 3300005289 Bacteria 171820
28 Ga0070683_100182975 3300005329 Bacteria 1989
29 Ga0070680_100061712 3300005336 Unclassified 3069
30 Ga0070660_100243853 3300005339 Bacteria 1464
31 Ga0070711_100528068 3300005439 Bacteria 976
32 Ga0070681_10057632 3300005458 Unclassified 3865
33 Ga0068853_100135348 3300005539 Bacteria 2208
34 Ga0070672_100398894 3300005543 Unclassified 1179
35 Ga0070665_100000205 3300005548 Bacteria 103515
36 Ga0068855_100004958 3300005563 Bacteria 16236
37 Ga0068855_100011013 3300005563 Bacteria 10917
38 Ga0068855_100062426 3300005563 Unclassified 4350
39 Ga0068857_100021890 3300005577 Bacteria 5626
40 Ga0068870_10034684 3300005840 Unclassified 2583
41 Ga0075366_10000054 3300006195 Bacteria 41332
42 Ga0075366_10025209 3300006195 Bacteria 3472
43 Ga0075366_10171533 3300006195 Bacteria 1316
44 Ga0075366_10319311 3300006195 Bacteria 951
45 Ga0097621_100029751 3300006237 Plasmid 4317
46 Ga0068871_100005172 3300006358 Bacteria 9122
47 Ga0105240_10298944 3300009093 Bacteria 1842
48 Ga0105240_10575139 3300009093 Bacteria 1243
49 Ga0105240_10814627 3300009093 Bacteria 1010
50 Ga0105237_10000125 3300009545 Bacteria 107351
51 Ga0105237_10000177 3300009545 Bacteria 90045
52 Ga0105237_10000496 3300009545 Bacteria 55702
53 Ga0105239_10000006 3300010375 Bacteria 442319
54 Ga0105239_10292723 3300010375 Unclassified 1833
55 Ga0157371_10001798 3300013102 Bacteria 21688
56 Ga0157371_10003296 3300013102 Bacteria 14776
57 Ga0157371_10027226 3300013102 Bacteria 4148
58 Ga0157371_10030167 3300013102 Unclassified 3913
59 Ga0157371_10046325 3300013102 Bacteria 3093
60 Ga0157370_10000072 3300013104 Bacteria 110176
61 Ga0157370_10000205 3300013104 Bacteria 74877
62 Ga0157370_10000314 3300013104 Bacteria 60800
63 Ga0157370_10002245 3300013104 Bacteria 23478
64 Ga0157370_10003516 3300013104 Bacteria 18363
65 Ga0157370_10010782 3300013104 Bacteria 9610
66 Ga0157370_10481867 3300013104 Bacteria 1140
67 Ga0157369_10000419 3300013105 Bacteria 56158
68 Ga0157369_10000742 3300013105 Bacteria 42082
69 Ga0157369_10086660 3300013105 Bacteria 3344
70 Ga0157369_10104279 3300013105 Bacteria 3020
71 Ga0157369_10156697 3300013105 Unclassified 2405
72 Ga0157374_10416541 3300013296 Bacteria 1342
73 Ga0157378_10046280 3300013297 Bacteria 3867
74 Ga0163162_10000208 3300013306 Bacteria 54338
75 Ga0163162_10003398 3300013306 Bacteria 15200
76 Ga0163162_10008725 3300013306 Bacteria 9864
77 Ga0163162_10040083 3300013306 Bacteria 4682
78 Ga0157372_10000326 3300013307 Bacteria 52158
79 Ga0157372_10014772 3300013307 Bacteria 8358
80 Ga0157372_10348311 3300013307 Bacteria 1726
81 Ga0157372_10477853 3300013307 Bacteria 1453
82 Ga0182008_10000006 3300014497 Bacteria 378521
83 Ga0182008_10002017 3300014497 Bacteria 13021
84 Ga0183373_1010 3300015682 Bacteria 196982
85 Ga0209563_116973 3300025230 Bacteria 883
86 Ga0209437_100024 3300025233 Bacteria 592878
87 Ga0209026_1000254 3300025250 Bacteria 66928
88 Ga0209026_1006625 3300025250 Bacteria 2796
89 Ga0209026_1011994 3300025250 Bacteria 1529
90 Ga0209026_1022937 3300025250 Bacteria 953
91 Ga0209233_1000604 3300025261 Bacteria 18532
92 Ga0209676_1000042 3300025292 Bacteria 424130
93 Ga0209050_1000035 3300025298 Bacteria 424005
94 Ga0209050_1000125 3300025298 Bacteria 189641
95 Ga0209257_1000994 3300025304 Bacteria 38435
96 Ga0207647_10000140 3300025904 Bacteria 57457
97 Ga0207705_10053605 3300025909 Bacteria 2906
98 Ga0207707_10028693 3300025912 Unclassified 4863
99 Ga0207695_10584067 3300025913 Bacteria 998
100 Ga0207671_10000112 3300025914 Bacteria 125310
101 Ga0207671_10000286 3300025914 Bacteria 74604
102 Ga0207671_10004430 3300025914 Bacteria 13448
103 Ga0207660_10047827 3300025917 Plasmid 3026
104 Ga0207694_10504018 3300025924 Unclassified 1014
105 Ga0207694_10572774 3300025924 Bacteria 949
106 Ga0207667_10003518 3300025949 Bacteria 19366
107 Ga0207667_10022554 3300025949 Bacteria 6951
108 Ga0207667_10098533 3300025949 Bacteria 3017
109 Ga0207639_10520200 3300026041 Bacteria 1089
110 Ga0207639_10954016 3300026041 Bacteria 803
111 Ga0207674_10012462 3300026116 Bacteria 9501
112 Ga0207683_10544927 3300026121 Unclassified 1072
113 Ga0268266_10000333 3300028379 Bacteria 74168
114 Ga0307515_10000114 3300028794 Bacteria 194024
115 Ga0316181_1140049 3300030744 Bacteria 1409
116 Ga0265327_10157409 3300031251 Bacteria 1052
117 Ga0307408_100000573 3300031548 Bacteria 31741
118 Ga0307516_10214557 3300031730 Bacteria 1637
119 Ga0307407_10000040 3300031903 Bacteria 66966
120 Ga0307414_10540153 3300032004 Bacteria 1037
121 Ga0307507_10000141 3300033179 Bacteria 125001
122 Ga0307507_10001092 3300033179 Bacteria 60190
123 Ga0307507_10001179 3300033179 Bacteria 58154
124 Ga0307510_10039121 3300033180 Bacteria 5231
125 Ga0395899_0000001 3300037312 Bacteria 1750322
126 Ga0395899_0000002 3300037312 Bacteria 1324310
127 Ga0395899_0032657 3300037312 Bacteria 3911
128 Ga0395900_0002909 3300037418 Bacteria 18659
129 Ga0395898_0027949 3300037466 Bacteria 5657
130 Ga0395901_0062519 3300038443 Bacteria 3874
131 Ga0451807_0826145 3300041486 Bacteria 606
132 Ga0466966_0000657 3300044684 Bacteria 22017
133 Ga0466961_0056271 3300044693 Bacteria 2506
134 Ga0495650_0000013 3300046471 Bacteria 611135
135 Ga0495585_0015577 3300046492 Bacteria 4418
136 Ga0495585_0092338 3300046492 Bacteria 1629
137 Ga0495596_0052576 3300046500 Bacteria 1595
138 Ga0495606_0023661 3300046507 Bacteria 4445
139 Ga0495606_0036299 3300046507 Bacteria 3358
140 Ga0495606_0144983 3300046507 Bacteria 1399
141 Ga0495648_0000542 3300046524 Bacteria 40768
142 Ga0495648_0001150 3300046524 Bacteria 26778
143 Ga0495648_0001429 3300046524 Bacteria 23367
144 Ga0495609_0002632 3300046538 Bacteria 10901
145 Ga0495633_0000167 3300046558 Bacteria 86373
146 Ga0495633_0001066 3300046558 Bacteria 22216
147 Ga0495625_0051921 3300046660 Bacteria 2937
148 Ga0495625_0151949 3300046660 Bacteria 1556
149 Ga0495625_0416693 3300046660 Bacteria 836
150 Ga0495589_0097181 3300046794 Bacteria 1427
151 Ga0495681_0103687 3300047470 Bacteria 1240
152 Ga0495686_0111688 3300047472 Bacteria 1638
153 Ga0496115_0077427 3300048918 Unclassified 2704
154 Ga0496122_0001002 3300048925 Bacteria 50067
155 Ga0495678_012579 3300049459 Bacteria 4009
156 Ga0501241_021716 3300049758 Bacteria 1184
157 nmdc:mga0k408_177_c1 3300050493 Bacteria 5356
158 nmdc:mga0k408_18128_c1 3300050493 Bacteria 3926
159 nmdc:mga0k408_91_c1 3300050493 Bacteria 42962
160 nmdc:mga07m45_485268_c1 3300050496 Bacteria 716
161 Ga0500569_178796 3300053109 Unclassified 720
162 Ga0500608_005267 3300053122 Bacteria 5118
163 Ga0500608_044990 3300053122 Unclassified 2120
164 Ga0500590_183676 3300053148 Bacteria 905

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300041486 Ga0451807_0826145 Ga0451807_0826145_61_579 171
2 3300053148 Ga0500590_183676 Ga0500590_183676_15_536 172
3 3300046524 Ga0495648_0001150 Ga0495648_0001150_19924_20550 178
4 3300046524 Ga0495648_0001429 Ga0495648_0001429_16566_17192 182
5 3300013306 Ga0163162_10008725 Ga0163162_100087259 185
6 3300013306 Ga0163162_10040083 Ga0163162_100400835 188
7 3300005840 Ga0068870_10034684 Ga0068870_100346842 190
8 3300005288 Ga0065714_10064434 Ga0065714_1006443472 194
9 3300003320 rootH2_10000153 rootH2_1000015371 200
10 3300046660 Ga0495625_0051921 Ga0495625_0051921_1663_2268 200
11 iso_pu_bacteria 2599185184 2599476702 200
12 iso_pu_bacteria 2739367663 2739644474 200
13 iso_pu_bacteria 2818991437 2819549234 200
14 iso_pu_bacteria 2884933994 2884936832 200
15 iso_pu_bacteria 2902048731 2902051855 200
16 iso_pu_bacteria 2932082852 2932083123 200
17 iso_pu_bacteria 2977232053 2977232226 200
18 iso_pu_bacteria 2977232053 2977235468 200
19 iso_pu_bacteria 2738541283 2738757326 201
20 iso_pu_bacteria 2738543023 2739304763 201
21 iso_pu_bacteria 2849281842 2849287001 201
22 iso_pu_bacteria 2884933994 2884935330 201
23 iso_pu_bacteria 2928078545 2928081497 201
24 iso_pu_bacteria 2928147474 2928148228 201
25 3300003323 rootH1_10000566 rootH1_10000566102 202
26 3300013102 Ga0157371_10003296 Ga0157371_1000329610 202
27 3300013105 Ga0157369_10156697 Ga0157369_101566972 202
28 iso_pu_bacteria 2585427687 2586207988 202
29 3300003320 rootH2_10004159 rootH2_100041594 203
30 3300003323 rootH1_10236532 rootH1_102365322 203
31 3300013102 Ga0157371_10030167 Ga0157371_100301673 203
32 3300013104 Ga0157370_10002245 Ga0157370_100022457 203
33 3300030744 Ga0316181_1140049 Ga0316181_11400492 203
34 3300047470 Ga0495681_0103687 Ga0495681_0103687_265_879 203
35 3300048918 Ga0496115_0077427 Ga0496115_0077427_925_1536 203
36 3300003322 rootL2_10290250 rootL2_102902502 204
37 3300003781 Ga0055536_1000008 Ga0055536_1000008270 204
38 3300003791 Ga0055530_10002222 Ga0055530_100022222 204
39 3300005288 Ga0065714_10015329 Ga0065714_100153292 204
40 3300005288 Ga0065714_10151514 Ga0065714_101515142 204
41 3300005329 Ga0070683_100182975 Ga0070683_1001829752 204
42 3300005339 Ga0070660_100243853 Ga0070660_1002438532 204
43 3300005539 Ga0068853_100135348 Ga0068853_1001353483 204
44 3300005543 Ga0070672_100398894 Ga0070672_1003988942 204
45 3300005548 Ga0070665_100000205 Ga0070665_10000020521 204
46 3300005563 Ga0068855_100004958 Ga0068855_1000049586 204
47 3300006195 Ga0075366_10025209 Ga0075366_100252094 204
48 3300006195 Ga0075366_10171533 Ga0075366_101715332 204
49 3300006237 Ga0097621_100029751 Ga0097621_1000297513 204
50 3300006358 Ga0068871_100005172 Ga0068871_1000051728 204
51 3300009093 Ga0105240_10298944 Ga0105240_102989443 204
52 3300009093 Ga0105240_10814627 Ga0105240_108146272 204
53 3300009545 Ga0105237_10000496 Ga0105237_1000049611 204
54 3300010375 Ga0105239_10000006 Ga0105239_10000006312 204
55 3300013102 Ga0157371_10001798 Ga0157371_1000179818 204
56 3300013102 Ga0157371_10027226 Ga0157371_100272262 204
57 3300013104 Ga0157370_10003516 Ga0157370_1000351612 204
58 3300013104 Ga0157370_10481867 Ga0157370_104818672 204
59 3300013105 Ga0157369_10000742 Ga0157369_1000074222 204
60 3300013306 Ga0163162_10000208 Ga0163162_1000020865 204
61 3300013306 Ga0163162_10003398 Ga0163162_100033985 204
62 3300013307 Ga0157372_10014772 Ga0157372_100147723 204
63 3300013307 Ga0157372_10477853 Ga0157372_104778533 204
64 3300025230 Ga0209563_116973 Ga0209563_1169732 204
65 3300025261 Ga0209233_1000604 Ga0209233_100060417 204
66 3300025292 Ga0209676_1000042 Ga0209676_1000042266 204
67 3300025298 Ga0209050_1000035 Ga0209050_1000035265 204
68 3300025909 Ga0207705_10053605 Ga0207705_100536052 204
69 3300025913 Ga0207695_10584067 Ga0207695_105840672 204
70 3300025914 Ga0207671_10004430 Ga0207671_100044307 204
71 3300025924 Ga0207694_10572774 Ga0207694_105727742 204
72 3300025949 Ga0207667_10003518 Ga0207667_1000351810 204
73 3300026041 Ga0207639_10954016 Ga0207639_109540162 204
74 3300028379 Ga0268266_10000333 Ga0268266_1000033370 204
75 3300028794 Ga0307515_10000114 Ga0307515_1000011443 204
76 3300031251 Ga0265327_10157409 Ga0265327_101574091 204
77 3300031548 Ga0307408_100000573 Ga0307408_10000057319 204
78 3300031903 Ga0307407_10000040 Ga0307407_1000004040 204
79 3300032004 Ga0307414_10540153 Ga0307414_105401531 204
80 3300033179 Ga0307507_10001179 Ga0307507_1000117918 204
81 3300033180 Ga0307510_10039121 Ga0307510_100391214 204
82 3300037312 Ga0395899_0000001 Ga0395899_0000001_271841_272455 204
83 3300037312 Ga0395899_0032657 Ga0395899_0032657_1599_2216 204
84 3300037418 Ga0395900_0002909 Ga0395900_0002909_17397_18014 204
85 3300037466 Ga0395898_0027949 Ga0395898_0027949_4089_4706 204
86 3300038443 Ga0395901_0062519 Ga0395901_0062519_2850_3467 204
87 3300046471 Ga0495650_0000013 Ga0495650_0000013_181451_182071 204
88 3300046500 Ga0495596_0052576 Ga0495596_0052576_589_1203 204
89 3300046507 Ga0495606_0023661 Ga0495606_0023661_1933_2550 204
90 3300046507 Ga0495606_0036299 Ga0495606_0036299_1683_2297 204
91 3300046524 Ga0495648_0000542 Ga0495648_0000542_3674_4291 204
92 3300046538 Ga0495609_0002632 Ga0495609_0002632_8242_8859 204
93 3300046558 Ga0495633_0000167 Ga0495633_0000167_21372_21989 204
94 3300046660 Ga0495625_0151949 Ga0495625_0151949_520_1137 204
95 3300049459 Ga0495678_012579 Ga0495678_012579_231_851 204
96 3300050493 nmdc:mga0k408_177_c1 nmdc:mga0k408_177_c1_2455_3069 204
97 3300053122 Ga0500608_005267 Ga0500608_005267_4192_4806 204
98 2162886007 SwRhRL2b_contig_1596339 SwRhRL2b_0713.00000730 205
99 2162886007 SwRhRL2b_contig_2418591 SwRhRL2b_0841.00006340 205
100 3300001904 JGI24736J21556_1008940 JGI24736J21556_10089401 205
101 3300001990 JGI24737J22298_10003187 JGI24737J22298_100031872 205
102 3300002067 JGI24735J21928_10000005 JGI24735J21928_10000005293 205
103 3300002737 JGI25162J39368_1000672 JGI25162J39368_100067220 205
104 3300003316 rootH1_10048761 rootH1_100487613 205
105 3300003316 rootH1_10065506 rootH1_100655062 205
106 3300003320 rootH2_10001891 rootH2_10001891308 205
107 3300003323 rootH1_10363444 rootH1_103634443 205
108 3300003791 Ga0055530_10000052 Ga0055530_1000005257 205
109 3300003794 Ga0055531_10022927 Ga0055531_100229272 205
110 3300005288 Ga0065714_10064854 Ga0065714_1006485412 205
111 3300005288 Ga0065714_10071892 Ga0065714_100718923 205
112 3300005288 Ga0065714_10236964 Ga0065714_102369641 205
113 3300005289 Ga0065704_10070168 Ga0065704_1007016884 205
114 3300005336 Ga0070680_100061712 Ga0070680_1000617124 205
115 3300005439 Ga0070711_100528068 Ga0070711_1005280682 205
116 3300005458 Ga0070681_10057632 Ga0070681_100576321 205
117 3300005563 Ga0068855_100011013 Ga0068855_1000110132 205
118 3300005563 Ga0068855_100062426 Ga0068855_1000624262 205
119 3300005577 Ga0068857_100021890 Ga0068857_1000218905 205
120 3300006195 Ga0075366_10000054 Ga0075366_1000005435 205
121 3300006195 Ga0075366_10319311 Ga0075366_103193112 205
122 3300009093 Ga0105240_10575139 Ga0105240_105751393 205
123 3300009545 Ga0105237_10000125 Ga0105237_1000012529 205
124 3300009545 Ga0105237_10000177 Ga0105237_1000017768 205
125 3300010375 Ga0105239_10292723 Ga0105239_102927232 205
126 3300013102 Ga0157371_10046325 Ga0157371_100463253 205
127 3300013104 Ga0157370_10000072 Ga0157370_1000007245 205
128 3300013104 Ga0157370_10000205 Ga0157370_1000020542 205
129 3300013104 Ga0157370_10000314 Ga0157370_1000031440 205
130 3300013104 Ga0157370_10010782 Ga0157370_100107822 205
131 3300013105 Ga0157369_10000419 Ga0157369_1000041941 205
132 3300013105 Ga0157369_10086660 Ga0157369_100866604 205
133 3300013105 Ga0157369_10104279 Ga0157369_101042792 205
134 3300013296 Ga0157374_10416541 Ga0157374_104165411 205
135 3300013297 Ga0157378_10046280 Ga0157378_100462802 205
136 3300013307 Ga0157372_10000326 Ga0157372_1000032628 205
137 3300013307 Ga0157372_10348311 Ga0157372_103483113 205
138 3300014497 Ga0182008_10000006 Ga0182008_1000000621 205
139 3300014497 Ga0182008_10002017 Ga0182008_1000201717 205
140 3300015682 Ga0183373_1010 Ga0183373_101090 205
141 3300025233 Ga0209437_100024 Ga0209437_10002418 205
142 3300025250 Ga0209026_1000254 Ga0209026_10002548 205
143 3300025250 Ga0209026_1006625 Ga0209026_10066251 205
144 3300025250 Ga0209026_1011994 Ga0209026_10119942 205
145 3300025250 Ga0209026_1022937 Ga0209026_10229371 205
146 3300025298 Ga0209050_1000125 Ga0209050_100012592 205
147 3300025304 Ga0209257_1000994 Ga0209257_100099418 205
148 3300025904 Ga0207647_10000140 Ga0207647_1000014014 205
149 3300025912 Ga0207707_10028693 Ga0207707_100286933 205
150 3300025914 Ga0207671_10000112 Ga0207671_1000011244 205
151 3300025914 Ga0207671_10000286 Ga0207671_100002862 205
152 3300025917 Ga0207660_10047827 Ga0207660_100478274 205
153 3300025924 Ga0207694_10504018 Ga0207694_105040182 205
154 3300025949 Ga0207667_10022554 Ga0207667_100225546 205
155 3300025949 Ga0207667_10098533 Ga0207667_100985333 205
156 3300026041 Ga0207639_10520200 Ga0207639_105202001 205
157 3300026116 Ga0207674_10012462 Ga0207674_100124625 205
158 3300026121 Ga0207683_10544927 Ga0207683_105449271 205
159 3300031730 Ga0307516_10214557 Ga0307516_102145573 205
160 3300033179 Ga0307507_10000141 Ga0307507_1000014121 205
161 3300033179 Ga0307507_10001092 Ga0307507_1000109237 205
162 3300037312 Ga0395899_0000002 Ga0395899_0000002_1202938_1203564 205
163 3300037312 Ga0395899_0000002 Ga0395899_0000002_152836_153462 205
164 3300044684 Ga0466966_0000657 Ga0466966_0000657_15401_16021 205
165 3300044693 Ga0466961_0056271 Ga0466961_0056271_1077_1697 205
166 3300046492 Ga0495585_0015577 Ga0495585_0015577_2838_3461 205
167 3300046492 Ga0495585_0092338 Ga0495585_0092338_138_770 205
168 3300046507 Ga0495606_0144983 Ga0495606_0144983_759_1376 205
169 3300046558 Ga0495633_0001066 Ga0495633_0001066_1675_2301 205
170 3300046660 Ga0495625_0416693 Ga0495625_0416693_113_739 205
171 3300046794 Ga0495589_0097181 Ga0495589_0097181_605_1231 205
172 3300047472 Ga0495686_0111688 Ga0495686_0111688_33_650 205
173 3300048925 Ga0496122_0001002 Ga0496122_0001002_20732_21361 205
174 3300049758 Ga0501241_021716 Ga0501241_021716_542_1168 205
175 3300050493 nmdc:mga0k408_18128_c1 nmdc:mga0k408_18128_c1_210_830 205
176 3300050493 nmdc:mga0k408_91_c1 nmdc:mga0k408_91_c1_31724_32350 205
177 3300050496 nmdc:mga07m45_485268_c1 nmdc:mga07m45_485268_c1_14_634 205
178 3300053109 Ga0500569_178796 Ga0500569_178796_72_692 205
179 3300053122 Ga0500608_044990 Ga0500608_044990_820_1452 205

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xb3-assembly1.cif.gz_A the structure of cyanobacterial psbp 0.7643 131 173
5wip-assembly1.cif.gz_D trae protein in complex with 2-(2-furyl)isonicotinic acid 0.7577 73 196
3wz4-assembly5.cif.gz_E structure of the periplasmic domain of doti (crystal form i) 0.7557 72 196
2bhm-assembly2.cif.gz_D crystal structure of virb8 from brucella suis 0.7514 70 196
5wip-assembly2.cif.gz_C trae protein in complex with 2-(2-furyl)isonicotinic acid 0.7468 73 201
ID Description Score Start End Superfamily
af_Q54DS7_301_401_2.60.40.290 Mainly Beta;Sandwich;Immunoglobulin-like; 0.7828 129 159 2.60.40.290
af_I6YGA5_49_159_3.10.450.230 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;VirB8 protein 0.7804 79 194 3.10.450.230
af_O53973_67_188_3.10.450.50 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.7783 74 194 3.10.450.50
2xb3A00 Alpha Beta;3-Layer(aba) Sandwich;Protein Transport Mog1p; Chain A;Mog1/PsbP, alpha/beta/alpha sandwich 0.7643 131 173 3.40.1000.10
af_I6YGA5_49_159_3.10.450.230 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;VirB8 protein 0.7622 79 194 3.10.450.230
ID Description Score Start End GO Terms
AF-K6A5S6-F1-model_v4 Conjugative transposon TraK protein 0.9936 65 202
AF-A0A015RZG8-F1-model_v4 deleted 0.9936 71 202
AF-A0A519YMU2-F1-model_v4 Conjugative transposon protein TraK 0.9933 71 202
AF-A0A2R7JQB4-F1-model_v4 Conjugative transposon protein TraK 0.9868 86 202
AF-A0A6L3IJB7-F1-model_v4 Conjugative transposon protein TraK 0.9846 65 202

Feature Viewer

pLDDT pTM Quality
85.9 0.69 Medium
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Predicted Structure (AlphaFold2)

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