F272804

General Info

Members Datasets Scaffolds Average Seq Length
178 146 356 237

Family's Representative Sequence

Representative Sequence 3300049823|Ga0501044_0493140|Ga0501044_0493140_303_1067
Length 254
Sequence VATSIELGDVLVELTFKAVRNVHLAVHPPAGHVTLVAPTDTRLDVARAYAVTRLPWIRRQQARFRGQAREVPLRFVERESHYLWGRRHLLSVVERDVKPRVTVDHRRIVLTVRPGSGIAKRRDVMQAWYRLQLHRAIPPLIASWERKLGVVVSRYYLQRMRTRWGACNHRAGTIRLNTELVKKPRDLLEYVIVHEMLHLIEPTHSNRFLELLDGCYPTWREARAELNELPLASGHRSRTTSSRSSNPPSPILPK

Samples

Sample ID Description Type Environment
1 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
2 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
7 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
8 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
9 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
10 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
11 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
12 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
13 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
19 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
20 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
21 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
22 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
29 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
52 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
55 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
57 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
83 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
84 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
85 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
88 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
89 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
90 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
91 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
92 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
93 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
94 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
95 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
96 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
97 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
98 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
99 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
100 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
101 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
102 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
103 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
104 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
105 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
106 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
107 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
108 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
109 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
110 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
113 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
114 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
115 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
116 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
117 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
120 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
121 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
125 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
126 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
131 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
132 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
133 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
134 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
135 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
136 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
137 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
138 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
139 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
140 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
141 2643221571 Pseudomonas sp. Root569 Isolate Unclassified
142 2834578030 Paracoccus thiocyanatus SST Isolate Unclassified
143 2874612657 Bradyrhizobium forestalis INPA54B Isolate Nodule
144 2919487758 Pseudomonas koreensis 3441 Isolate Unclassified
145 2974289157 Pseudomonas fluorescens SORGH_AS 191 Isolate Unclassified
146 3000865235 Altericroceibacterium indicum DSM 18604 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.63
Metatranscriptomes 0
Isolates 3.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.17
Nodule 0.56
Rhizoplane 2.25
Rhizosphere 75.28
Stem 0
Stem Tuber 0
Unclassified 2.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501044_0493140 3300049823 Bacteria 1127
2 CNXas_1000013 3300000545 Bacteria 36942
3 JGI25165J46597_1000551 3300003214 Bacteria 34189
4 rootL2_10072566 3300003322 Bacteria 2318
5 rootH1_10015415 3300003323 Bacteria 4117
6 rootH1_10119029 3300003323 Bacteria 3202
7 JGI25160J50197_1004383 3300003354 Bacteria 6116
8 Ga0055539_1003198 3300003752 Bacteria 2330
9 Ga0055533_1004775 3300003756 Bacteria 2342
10 Ga0055524_1001115 3300003775 Bacteria 16200
11 Ga0055528_1001242 3300003790 Bacteria 16200
12 Ga0055543_1001767 3300004625 Bacteria 8061
13 Ga0065165_1001088 3300005262 Bacteria 32379
14 Ga0065165_1052382 3300005262 Bacteria 1153
15 Ga0065714_10065118 3300005288 Bacteria 12778
16 Ga0070658_10158912 3300005327 Bacteria 1895
17 Ga0070683_100005917 3300005329 Bacteria 10235
18 Ga0070670_100460829 3300005331 Bacteria 1127
19 Ga0070660_100000701 3300005339 Bacteria 22190
20 Ga0070660_100048858 3300005339 Bacteria 3250
21 Ga0070660_100170600 3300005339 Bacteria 1757
22 Ga0070689_100027129 3300005340 Unclassified 4316
23 Ga0070661_100009524 3300005344 Bacteria 6730
24 Ga0070661_100073507 3300005344 Bacteria 2517
25 Ga0070669_100481285 3300005353 Bacteria 1027
26 Ga0070673_100352753 3300005364 Bacteria 1306
27 Ga0070659_100040083 3300005366 Bacteria 3659
28 Ga0070659_100624728 3300005366 Bacteria 927
29 Ga0070659_100645918 3300005366 Bacteria 912
30 Ga0070679_100151655 3300005530 Bacteria 2294
31 Ga0070684_100001187 3300005535 Bacteria 18726
32 Ga0070665_100765803 3300005548 Bacteria 978
33 Ga0068855_100024044 3300005563 Bacteria 7294
34 Ga0068855_100136602 3300005563 Bacteria 2797
35 Ga0070664_100002547 3300005564 Bacteria 14703
36 Ga0070664_100354482 3300005564 Unclassified 1335
37 Ga0070664_100462094 3300005564 Bacteria 1166
38 Ga0068857_100275810 3300005577 Bacteria 1546
39 Ga0068854_100064760 3300005578 Bacteria 2656
40 Ga0068861_100023299 3300005719 Bacteria 4465
41 Ga0075366_10003700 3300006195 Bacteria 8115
42 Ga0097621_100051280 3300006237 Bacteria 3358
43 Ga0068871_100037835 3300006358 Bacteria 3850
44 Ga0075429_100130041 3300006880 Bacteria 2202
45 Ga0068865_100422431 3300006881 Bacteria 1096
46 Ga0105240_10157903 3300009093 Bacteria 2696
47 Ga0105240_10315255 3300009093 Bacteria 1784
48 Ga0105245_10239330 3300009098 Bacteria 1759
49 Ga0105243_10169143 3300009148 Bacteria 1891
50 Ga0105242_10021414 3300009176 Bacteria 5076
51 Ga0105238_10083690 3300009551 Bacteria 3180
52 Ga0157370_10001248 3300013104 Bacteria 31761
53 Ga0157370_10179817 3300013104 Bacteria 1966
54 Ga0157370_10199339 3300013104 Bacteria 1857
55 Ga0157374_10388883 3300013296 Unclassified 1390
56 Ga0157378_10007710 3300013297 Bacteria 9393
57 Ga0163162_10000332 3300013306 Bacteria 43297
58 Ga0163162_10393905 3300013306 Bacteria 1518
59 Ga0157372_10031411 3300013307 Bacteria 5815
60 Ga0163163_10211305 3300014325 Bacteria 1990
61 Ga0182007_10000405 3300015262 Bacteria 26612
62 Ga0209674_104207 3300025226 Bacteria 2394
63 Ga0207427_100969 3300025231 Bacteria 12163
64 Ga0209677_101146 3300025253 Bacteria 12333
65 Ga0209233_1000208 3300025261 Bacteria 115633
66 Ga0209565_1007739 3300025263 Bacteria 2869
67 Ga0209673_1000840 3300025273 Bacteria 40156
68 Ga0209025_1009741 3300025294 Bacteria 6636
69 Ga0209256_1000555 3300025299 Bacteria 53550
70 Ga0207426_1000379 3300025302 Bacteria 76587
71 Ga0207426_1007560 3300025302 Bacteria 4529
72 Ga0207655_1000274 3300025728 Bacteria 80899
73 Ga0207705_10023772 3300025909 Bacteria 4372
74 Ga0207705_10337434 3300025909 Bacteria 1160
75 Ga0207654_10134568 3300025911 Bacteria 1568
76 Ga0207695_10002327 3300025913 Bacteria 28332
77 Ga0207695_10026481 3300025913 Bacteria 6473
78 Ga0207671_10308632 3300025914 Bacteria 1250
79 Ga0207663_10634238 3300025916 Unclassified 842
80 Ga0207657_10003394 3300025919 Bacteria 17022
81 Ga0207657_10007516 3300025919 Bacteria 11169
82 Ga0207657_10039672 3300025919 Bacteria 4182
83 Ga0207657_10156782 3300025919 Bacteria 1851
84 Ga0207649_10002028 3300025920 Bacteria 11519
85 Ga0207649_10111713 3300025920 Bacteria 1827
86 Ga0207652_10419250 3300025921 Bacteria 1207
87 Ga0207681_10493123 3300025923 Bacteria 1002
88 Ga0207694_10001384 3300025924 Bacteria 20818
89 Ga0207694_10040377 3300025924 Bacteria 3592
90 Ga0207650_10005959 3300025925 Bacteria 8322
91 Ga0207690_10025191 3300025932 Bacteria 3732
92 Ga0207686_10086623 3300025934 Bacteria 2058
93 Ga0207709_10005195 3300025935 Bacteria 7413
94 Ga0207670_10110890 3300025936 Bacteria 1977
95 Ga0207661_10003367 3300025944 Bacteria 11100
96 Ga0207679_10000252 3300025945 Bacteria 40854
97 Ga0207679_10000647 3300025945 Bacteria 23264
98 Ga0207679_10306855 3300025945 Unclassified 1370
99 Ga0207667_10076035 3300025949 Bacteria 3485
100 Ga0207667_10139591 3300025949 Bacteria 2495
101 Ga0207651_10300104 3300025960 Bacteria 1335
102 Ga0207678_10002726 3300026067 Bacteria 16015
103 Ga0207674_10305133 3300026116 Bacteria 1541
104 Ga0207675_100037294 3300026118 Bacteria 4535
105 Ga0209970_1012704 3300027614 Bacteria 1393
106 Ga0268266_10608974 3300028379 Bacteria 1049
107 Ga0265342_10005897 3300031712 Bacteria 9238
108 Ga0395905_0070231 3300037471 Bacteria 3281
109 Ga0439451_000037 3300042009 Bacteria 26993
110 Ga0439446_0011879 3300042156 Bacteria 2372
111 Ga0453684_0000120 3300044712 Bacteria 345098
112 Ga0495617_001371 3300046452 Bacteria 10759
113 Ga0495590_0008231 3300046457 Bacteria 3988
114 Ga0495591_004157 3300046458 Bacteria 7185
115 Ga0495629_0066310 3300046459 Bacteria 2520
116 Ga0495580_0045566 3300046472 Bacteria 3115
117 Ga0495584_0043902 3300046491 Bacteria 2257
118 Ga0495585_0049435 3300046492 Bacteria 2335
119 Ga0495585_0148581 3300046492 Bacteria 1223
120 Ga0495594_0215078 3300046499 Bacteria 1096
121 Ga0495596_0007263 3300046500 Bacteria 5013
122 Ga0495616_0000265 3300046513 Bacteria 42303
123 Ga0495630_0027274 3300046517 Bacteria 4235
124 Ga0495632_0001902 3300046519 Bacteria 16718
125 Ga0495632_0123221 3300046519 Bacteria 1210
126 Ga0495643_0044715 3300046522 Bacteria 2405
127 Ga0495663_0000329 3300046525 Bacteria 17789
128 Ga0495666_0057050 3300046526 Bacteria 1869
129 Ga0495640_0139033 3300046533 Bacteria 1566
130 Ga0495633_0154695 3300046558 Bacteria 1058
131 Ga0495667_0165303 3300046559 Bacteria 1422
132 Ga0495634_0000472 3300046642 Bacteria 39707
133 Ga0495611_0147074 3300046648 Bacteria 1100
134 Ga0495646_0000098 3300046680 Bacteria 42811
135 Ga0495613_0002752 3300046689 Bacteria 13205
136 Ga0495671_0001589 3300046692 Bacteria 15009
137 Ga0495671_0005814 3300046692 Bacteria 7184
138 Ga0495604_0328855 3300047317 Bacteria 1020
139 Ga0495674_0165763 3300047319 Bacteria 1846
140 Ga0495676_0001516 3300047321 Bacteria 20091
141 Ga0495676_0005324 3300047321 Bacteria 11783
142 Ga0495683_0022818 3300047323 Bacteria 3218
143 Ga0495687_017964 3300047443 Bacteria 3510
144 Ga0495673_0036461 3300047469 Bacteria 2255
145 Ga0495681_0000255 3300047470 Bacteria 43383
146 Ga0495684_0011160 3300047471 Bacteria 6943
147 Ga0496102_0000660 3300048905 Bacteria 34465
148 Ga0496104_0081790 3300048907 Bacteria 3080
149 Ga0496110_0281315 3300048913 Bacteria 1515
150 Ga0496112_0014633 3300048915 Bacteria 7291
151 Ga0496116_0008414 3300048919 Bacteria 8955
152 Ga0496121_0002944 3300048924 Bacteria 24869
153 Ga0496125_0001085 3300048928 Bacteria 41933
154 Ga0496125_0004425 3300048928 Bacteria 16224
155 Ga0496125_0212702 3300048928 Bacteria 1254
156 Ga0495678_061462 3300049459 Bacteria 1409
157 Ga0501031_0023809 3300049568 Bacteria 3992
158 Ga0501034_0003601 3300049571 Bacteria 17582
159 Ga0501037_0083924 3300049573 Bacteria 2308
160 Ga0501047_0013050 3300049581 Bacteria 7870
161 Ga0501070_0330802 3300049586 Bacteria 1238
162 Ga0501073_0402209 3300049589 Bacteria 946
163 Ga0501044_0676444 3300049823 Bacteria 919
164 nmdc:mga00v17_58923_c1 3300050491 Bacteria 2354
165 nmdc:mga0k408_998_c1 3300050493 Bacteria 15569
166 nmdc:mga09592_86983_c1 3300050508 Bacteria 2667
167 Ga0500643_003732 3300053087 Bacteria 7161
168 Ga0500555_011118 3300053103 Bacteria 2586
169 Ga0500568_0036053 3300053139 Bacteria 2015
170 Ga0500627_0180319 3300053158 Bacteria 950
171 Ga0500634_0000172 3300053161 Bacteria 21425
172 Ga0501082_0010872 3300060353 Bacteria 7835
173 2643869609 2643221571 Bacteria 6228673
174 2834581724 2834578030 Bacteria 3530182
175 2874617901 2874612657 Bacteria 8252029
176 2919492029 2919487758 Bacteria 5929766
177 2974293026 2974289157 Bacteria 6080362
178 3000866704 3000865235 Bacteria 3106258
179 Ga0501044_0493140
180 CNXas_1000013
181 JGI25165J46597_1000551
182 rootL2_10072566
183 rootH1_10015415
184 rootH1_10119029
185 JGI25160J50197_1004383
186 Ga0055539_1003198
187 Ga0055533_1004775
188 Ga0055524_1001115
189 Ga0055528_1001242
190 Ga0055543_1001767
191 Ga0065165_1001088
192 Ga0065165_1052382
193 Ga0065714_10065118
194 Ga0070658_10158912
195 Ga0070683_100005917
196 Ga0070670_100460829
197 Ga0070660_100000701
198 Ga0070660_100048858
199 Ga0070660_100170600
200 Ga0070689_100027129
201 Ga0070661_100009524
202 Ga0070661_100073507
203 Ga0070669_100481285
204 Ga0070673_100352753
205 Ga0070659_100040083
206 Ga0070659_100624728
207 Ga0070659_100645918
208 Ga0070679_100151655
209 Ga0070684_100001187
210 Ga0070665_100765803
211 Ga0068855_100024044
212 Ga0068855_100136602
213 Ga0070664_100002547
214 Ga0070664_100354482
215 Ga0070664_100462094
216 Ga0068857_100275810
217 Ga0068854_100064760
218 Ga0068861_100023299
219 Ga0075366_10003700
220 Ga0097621_100051280
221 Ga0068871_100037835
222 Ga0075429_100130041
223 Ga0068865_100422431
224 Ga0105240_10157903
225 Ga0105240_10315255
226 Ga0105245_10239330
227 Ga0105243_10169143
228 Ga0105242_10021414
229 Ga0105238_10083690
230 Ga0157370_10001248
231 Ga0157370_10179817
232 Ga0157370_10199339
233 Ga0157374_10388883
234 Ga0157378_10007710
235 Ga0163162_10000332
236 Ga0163162_10393905
237 Ga0157372_10031411
238 Ga0163163_10211305
239 Ga0182007_10000405
240 Ga0209674_104207
241 Ga0207427_100969
242 Ga0209677_101146
243 Ga0209233_1000208
244 Ga0209565_1007739
245 Ga0209673_1000840
246 Ga0209025_1009741
247 Ga0209256_1000555
248 Ga0207426_1000379
249 Ga0207426_1007560
250 Ga0207655_1000274
251 Ga0207705_10023772
252 Ga0207705_10337434
253 Ga0207654_10134568
254 Ga0207695_10002327
255 Ga0207695_10026481
256 Ga0207671_10308632
257 Ga0207663_10634238
258 Ga0207657_10003394
259 Ga0207657_10007516
260 Ga0207657_10039672
261 Ga0207657_10156782
262 Ga0207649_10002028
263 Ga0207649_10111713
264 Ga0207652_10419250
265 Ga0207681_10493123
266 Ga0207694_10001384
267 Ga0207694_10040377
268 Ga0207650_10005959
269 Ga0207690_10025191
270 Ga0207686_10086623
271 Ga0207709_10005195
272 Ga0207670_10110890
273 Ga0207661_10003367
274 Ga0207679_10000252
275 Ga0207679_10000647
276 Ga0207679_10306855
277 Ga0207667_10076035
278 Ga0207667_10139591
279 Ga0207651_10300104
280 Ga0207678_10002726
281 Ga0207674_10305133
282 Ga0207675_100037294
283 Ga0209970_1012704
284 Ga0268266_10608974
285 Ga0265342_10005897
286 Ga0395905_0070231
287 Ga0439451_000037
288 Ga0439446_0011879
289 Ga0453684_0000120
290 Ga0495617_001371
291 Ga0495590_0008231
292 Ga0495591_004157
293 Ga0495629_0066310
294 Ga0495580_0045566
295 Ga0495584_0043902
296 Ga0495585_0049435
297 Ga0495585_0148581
298 Ga0495594_0215078
299 Ga0495596_0007263
300 Ga0495616_0000265
301 Ga0495630_0027274
302 Ga0495632_0001902
303 Ga0495632_0123221
304 Ga0495643_0044715
305 Ga0495663_0000329
306 Ga0495666_0057050
307 Ga0495640_0139033
308 Ga0495633_0154695
309 Ga0495667_0165303
310 Ga0495634_0000472
311 Ga0495611_0147074
312 Ga0495646_0000098
313 Ga0495613_0002752
314 Ga0495671_0001589
315 Ga0495671_0005814
316 Ga0495604_0328855
317 Ga0495674_0165763
318 Ga0495676_0001516
319 Ga0495676_0005324
320 Ga0495683_0022818
321 Ga0495687_017964
322 Ga0495673_0036461
323 Ga0495681_0000255
324 Ga0495684_0011160
325 Ga0496102_0000660
326 Ga0496104_0081790
327 Ga0496110_0281315
328 Ga0496112_0014633
329 Ga0496116_0008414
330 Ga0496121_0002944
331 Ga0496125_0001085
332 Ga0496125_0004425
333 Ga0496125_0212702
334 Ga0495678_061462
335 Ga0501031_0023809
336 Ga0501034_0003601
337 Ga0501037_0083924
338 Ga0501047_0013050
339 Ga0501070_0330802
340 Ga0501073_0402209
341 Ga0501044_0676444
342 nmdc:mga00v17_58923_c1
343 nmdc:mga0k408_998_c1
344 nmdc:mga09592_86983_c1
345 Ga0500643_003732
346 Ga0500555_011118
347 Ga0500568_0036053
348 Ga0500627_0180319
349 Ga0500634_0000172
350 Ga0501082_0010872
351 2643869609
352 2834581724
353 2874617901
354 2919492029
355 2974293026
356 3000866704

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01863

YgjP-like

YgjP-like, metallopeptidase domain

20

229

0.98

PF10263

SprT-like

SprT-like family

141

230

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jix-assembly1.cif.gz_A crystal structure of the metallopeptidase zymogen of methanocaldococcus jannaschii jannalysin 0.816 137 228
4jiu-assembly1.cif.gz_A crystal structure of the metallopeptidase zymogen of pyrococcus abyssi abylysin 0.8145 137 228
4jix-assembly1.cif.gz_B crystal structure of the metallopeptidase zymogen of methanocaldococcus jannaschii jannalysin 0.8069 137 228
4qhi-assembly2.cif.gz_C crystal structure of methanocaldococcus jannaschii selecase mutant r36w 0.742 131 226
6jo7-assembly1.cif.gz_A crystal structure of mouse mxra8 0.7381 86 113
ID Description Score Start End Superfamily
af_P42597_68_160_3.30.2010.10 "Alpha Beta;2-Layer Sandwich;Zincin-like;Metalloproteases (""zincins""), catalytic domain" 0.8364 174 229 3.30.2010.10
4jiuA00 "Alpha Beta;2-Layer Sandwich;Zincin-like;Metalloproteases (""zincins""), catalytic domain" 0.8335 137 233 3.30.2010.10
4jixB00 "Alpha Beta;2-Layer Sandwich;Zincin-like;Metalloproteases (""zincins""), catalytic domain" 0.8069 137 228 3.30.2010.10
4jiuA00 "Alpha Beta;2-Layer Sandwich;Zincin-like;Metalloproteases (""zincins""), catalytic domain" 0.77 137 233 3.30.2010.10
4qhiC00 "Alpha Beta;2-Layer Sandwich;Zincin-like;Metalloproteases (""zincins""), catalytic domain" 0.742 131 226 3.30.2010.10
ID Description Score Start End GO Terms
AF-A0A270NJN5-F1-model_v4 YgjP-like metallopeptidase domain-containing protein 0.9895 97 234
AF-A0A4V3KYV6-F1-model_v4 M48 family peptidase 0.9813 67 238
AF-A0A270NJN5-F1-model_v4 YgjP-like metallopeptidase domain-containing protein 0.9754 97 234
AF-I5BXV0-F1-model_v4 YgjP-like metallopeptidase domain-containing protein 0.9713 113 230
AF-A0A3D1G7D2-F1-model_v4 Metal-dependent hydrolase 0.9658 70 231 GO:0016787

Map