F272681

General Info

Members Datasets Scaffolds Average Seq Length
178 135 356 342

Family's Representative Sequence

Representative Sequence 3300048918|Ga0496115_0308937|Ga0496115_0308937_368_1252
Length 294
Sequence MQALAADDRLRHFLLREPRGSVATHANLIVPATRPDCDAGYIIMEPTEYPAMSGSNTICVATVLLETGRLEMREPETVLRLEAPAGLVEIRAACRDGRVESVELTNVPALVARLDATIEVEGLGSVNVDVAYGGMWYAIADAASLGFAIEPHEARELCDVGERIRVAARTQLEPRVSIVQIAEPWRGVDAITKNAVVIAPGRLDRSATGTGLSARMAVLHKRGLMRVGDSMTHASAIGSTFDGRIVAATEHGIVPAIRGSAWITGVSELYVSDDDPFPEGYLLSDTWPGDDTQN

Samples

Sample ID Description Type Environment
1 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
48 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
66 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
67 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
68 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
69 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
70 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
71 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
72 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
75 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
76 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
77 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
78 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
79 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
80 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
83 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
88 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
89 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
90 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
91 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
92 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
93 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
94 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
95 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
96 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
97 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
98 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
99 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
100 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
101 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
102 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
103 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
104 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
105 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
106 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
107 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
108 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
111 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
112 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
115 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
116 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
117 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
118 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
122 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
123 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
127 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
128 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
129 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
130 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
134 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.88
Metatranscriptomes 1.12
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 12.92
Rhizosphere 86.52
Stem 0
Stem Tuber 0
Unclassified 2.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496115_0308937 3300048918 Bacteria 1295
2 JGI25407J50210_10007510 3300003373 Bacteria 2732
3 Ga0070658_10070158 3300005327 Bacteria 2868
4 Ga0070683_100131922 3300005329 Bacteria 2365
5 Ga0070680_100000001 3300005336 Bacteria 276263
6 Ga0070661_100137745 3300005344 Bacteria 1838
7 Ga0070714_100145464 3300005435 Bacteria 2132
8 Ga0070711_100039074 3300005439 Bacteria 3194
9 Ga0070705_100061057 3300005440 Bacteria 2239
10 Ga0070708_100000714 3300005445 Bacteria 25242
11 Ga0070681_10132491 3300005458 Bacteria 2425
12 Ga0070706_100004085 3300005467 Bacteria 14193
13 Ga0070706_100310515 3300005467 Bacteria 1471
14 Ga0070707_100015752 3300005468 Bacteria 7097
15 Ga0070707_100027499 3300005468 Bacteria 5411
16 Ga0070698_100302612 3300005471 Bacteria 1530
17 Ga0070679_100258985 3300005530 Bacteria 1695
18 Ga0070684_100397863 3300005535 Bacteria 1270
19 Ga0070686_100011833 3300005544 Bacteria 4958
20 Ga0070686_100082307 3300005544 Bacteria 2135
21 Ga0070696_100004584 3300005546 Bacteria 9227
22 Ga0070696_100118000 3300005546 Bacteria 1918
23 Ga0068855_100090782 3300005563 Bacteria 3524
24 Ga0068854_100201288 3300005578 Bacteria 1566
25 Ga0068856_100149268 3300005614 Bacteria 2346
26 Ga0070702_100134790 3300005615 Bacteria 1565
27 Ga0068860_100116535 3300005843 Bacteria 2556
28 Ga0081538_10001932 3300005981 Bacteria 20753
29 Ga0081538_10011841 3300005981 Bacteria 7042
30 Ga0081540_1002467 3300005983 Bacteria 15070
31 Ga0070715_10124982 3300006163 Bacteria 1231
32 Ga0070712_100102758 3300006175 Bacteria 2117
33 Ga0097621_100289109 3300006237 Bacteria 1445
34 Ga0075428_100023761 3300006844 Bacteria 6783
35 Ga0068865_100052050 3300006881 Bacteria 2836
36 Ga0075436_100108301 3300006914 Bacteria 1938
37 Ga0075435_100020992 3300007076 Bacteria 5017
38 Ga0105240_10190411 3300009093 Bacteria 2413
39 Ga0111539_10009880 3300009094 Bacteria 12042
40 Ga0114129_10222638 3300009147 Bacteria 2545
41 Ga0105243_10356056 3300009148 Bacteria 1346
42 Ga0105241_10078301 3300009174 Bacteria 2583
43 Ga0105248_10102936 3300009177 Bacteria 3218
44 Ga0105248_10150272 3300009177 Bacteria 2628
45 Ga0105238_10152962 3300009551 Bacteria 2282
46 Ga0157373_10174982 3300013100 Bacteria 1510
47 Ga0157370_10021254 3300013104 Bacteria 6469
48 Ga0157370_10162054 3300013104 Bacteria 2081
49 Ga0157369_10023678 3300013105 Bacteria 6839
50 Ga0157372_10721969 3300013307 Bacteria 1159
51 Ga0157375_10545571 3300013308 Bacteria 1321
52 Ga0182008_10007677 3300014497 Bacteria 5944
53 Ga0157376_10009515 3300014969 Bacteria 7062
54 Ga0182006_1006915 3300015261 Bacteria 5226
55 Ga0206354_10982323 3300020081 Bacteria 2595
56 Ga0206353_10890547 3300020082 Bacteria 3098
57 Ga0207684_10005712 3300025910 Bacteria 11427
58 Ga0207707_10083232 3300025912 Bacteria 2794
59 Ga0207695_10242854 3300025913 Bacteria 1702
60 Ga0207693_10098118 3300025915 Bacteria 2298
61 Ga0207693_10103149 3300025915 Bacteria 2237
62 Ga0207663_10031246 3300025916 Bacteria 3150
63 Ga0207663_10232807 3300025916 Bacteria 1347
64 Ga0207660_10000001 3300025917 Bacteria 1034169
65 Ga0207660_10176431 3300025917 Bacteria 1657
66 Ga0207662_10030402 3300025918 Bacteria 3134
67 Ga0207657_10007449 3300025919 Bacteria 11224
68 Ga0207646_10002272 3300025922 Bacteria 22859
69 Ga0207646_10139927 3300025922 Bacteria 2179
70 Ga0207664_10320496 3300025929 Bacteria 1368
71 Ga0207661_10092020 3300025944 Bacteria 2528
72 Ga0207661_10113372 3300025944 Bacteria 2297
73 Ga0207708_10126429 3300026075 Bacteria 1996
74 Ga0207648_10253123 3300026089 Bacteria 1570
75 Ga0207674_10027258 3300026116 Bacteria 6048
76 Ga0207683_10053495 3300026121 Bacteria 3540
77 Ga0207683_10401509 3300026121 Bacteria 1261
78 Ga0207428_10082513 3300027907 Bacteria 2508
79 Ga0265319_1007297 3300028563 Bacteria 4987
80 Ga0265319_1008089 3300028563 Bacteria 4645
81 Ga0265318_10015872 3300028577 Bacteria 3120
82 Ga0265338_10028443 3300028800 Bacteria 5574
83 Ga0265330_10060812 3300031235 Bacteria 1644
84 Ga0265328_10079690 3300031239 Unclassified 1207
85 Ga0265320_10026798 3300031240 Bacteria 3012
86 Ga0265340_10043495 3300031247 Unclassified 2201
87 Ga0265327_10116229 3300031251 Unclassified 1272
88 Ga0265316_10009715 3300031344 Bacteria 8831
89 Ga0265313_10010019 3300031595 Bacteria 6066
90 Ga0265314_10034910 3300031711 Bacteria 3669
91 Ga0265342_10032151 3300031712 Bacteria 3238
92 Ga0373943_0075418 3300035170 Archaea 1718
93 Ga0373955_0070325 3300035172 Bacteria 1955
94 Ga0395899_0208514 3300037312 Bacteria 1359
95 Ga0395900_0012225 3300037418 Bacteria 8778
96 Ga0395900_0017885 3300037418 Bacteria 7235
97 Ga0395900_0035325 3300037418 Bacteria 5148
98 Ga0395900_0438121 3300037418 Bacteria 1265
99 Ga0395898_0022827 3300037466 Bacteria 6329
100 Ga0395898_0025460 3300037466 Bacteria 5961
101 Ga0395898_0031419 3300037466 Bacteria 5306
102 Ga0395898_0104261 3300037466 Bacteria 2720
103 Ga0395905_0016685 3300037471 Bacteria 6979
104 Ga0395901_0010528 3300038443 Bacteria 9367
105 Ga0395901_0046872 3300038443 Bacteria 4490
106 Ga0395901_0127275 3300038443 Unclassified 2677
107 Ga0395901_0169847 3300038443 Bacteria 2288
108 Ga0395901_0192743 3300038443 Bacteria 2137
109 Ga0395901_0446178 3300038443 Bacteria 1324
110 Ga0436360_0162326 3300039438 Bacteria 1210
111 Ga0451853_0346139 3300041512 Bacteria 3588
112 Ga0439446_0005881 3300042156 Bacteria 3172
113 Ga0439434_0011252 3300042435 Bacteria 2643
114 Ga0451577_0180746 3300042876 Bacteria 1902
115 Ga0453683_0005587 3300044673 Bacteria 8743
116 Ga0453683_0064755 3300044673 Bacteria 2285
117 Ga0466966_0062039 3300044684 Bacteria 2357
118 Ga0466963_0002833 3300044694 Bacteria 9777
119 Ga0466963_0062452 3300044694 Bacteria 2491
120 Ga0466957_0030107 3300044842 Bacteria 3240
121 Ga0466957_0069586 3300044842 Bacteria 2174
122 Ga0466957_0135206 3300044842 Bacteria 1584
123 Ga0451576_0232954 3300045051 Bacteria 1923
124 Ga0466958_0010126 3300045836 Bacteria 5271
125 Ga0466967_0089427 3300045976 Bacteria 2796
126 Ga0466967_0148937 3300045976 Bacteria 2186
127 Ga0495592_0268090 3300046454 Bacteria 1121
128 Ga0495651_0004465 3300046462 Bacteria 10716
129 Ga0495630_0111583 3300046517 Bacteria 2071
130 Ga0495630_0244146 3300046517 Bacteria 1372
131 Ga0495588_0125922 3300046674 Unclassified 1351
132 Ga0495581_0052049 3300047315 Bacteria 2365
133 Ga0495604_0050069 3300047317 Bacteria 3244
134 Ga0495674_0054663 3300047319 Bacteria 3505
135 Ga0495674_0067107 3300047319 Bacteria 3109
136 Ga0495676_0216975 3300047321 Bacteria 1320
137 Ga0495680_0014409 3300047322 Bacteria 6847
138 Ga0496100_0006237 3300048903 Bacteria 6490
139 Ga0496100_0017303 3300048903 Bacteria 4253
140 Ga0496101_0005485 3300048904 Bacteria 8090
141 Ga0496101_0071292 3300048904 Bacteria 2547
142 Ga0496104_0203561 3300048907 Bacteria 1891
143 Ga0496105_0005998 3300048908 Bacteria 9280
144 Ga0496105_0026619 3300048908 Bacteria 4721
145 Ga0496105_0315371 3300048908 Bacteria 1254
146 Ga0496106_0031258 3300048909 Bacteria 3966
147 Ga0496106_0209217 3300048909 Bacteria 1553
148 Ga0496107_0019930 3300048910 Bacteria 4736
149 Ga0496108_0041265 3300048911 Bacteria 3852
150 Ga0496108_0095415 3300048911 Bacteria 2532
151 Ga0496109_0084822 3300048912 Bacteria 2923
152 Ga0496109_0215130 3300048912 Bacteria 1807
153 Ga0496111_0031118 3300048914 Bacteria 3800
154 Ga0496112_0024742 3300048915 Bacteria 5757
155 Ga0496113_0217942 3300048916 Bacteria 1521
156 Ga0496114_0027471 3300048917 Bacteria 4662
157 Ga0496114_0080680 3300048917 Bacteria 2748
158 Ga0496114_0145102 3300048917 Bacteria 2057
159 Ga0496114_0208399 3300048917 Bacteria 1714
160 Ga0501034_0021511 3300049571 Bacteria 6572
161 Ga0501047_0392072 3300049581 Bacteria 1222
162 Ga0501048_0314209 3300049582 Bacteria 1116
163 Ga0501067_0008948 3300049583 Bacteria 5549
164 Ga0501069_0039106 3300049585 Bacteria 2620
165 Ga0501070_0001690 3300049586 Bacteria 19562
166 Ga0501070_0014571 3300049586 Bacteria 6618
167 Ga0501073_0015206 3300049589 Bacteria 5582
168 Ga0501074_0030322 3300049590 Bacteria 3919
169 Ga0501077_0124070 3300049593 Bacteria 1637
170 Ga0501079_0154546 3300049741 Bacteria 1788
171 Ga0501080_0000790 3300049742 Bacteria 25827
172 Ga0501083_0001358 3300049744 Bacteria 16628
173 Ga0501044_0267117 3300049823 Bacteria 1648
174 nmdc:mga05p37_742333_c1 3300050507 Bacteria 1083
175 nmdc:mga08y16_45884_c1 3300050511 Bacteria 4577
176 nmdc:mga0rr50_103409_c1 3300050513 Bacteria 2242
177 nmdc:mga0a205_359295_c1 3300050515 Bacteria 1323
178 Ga0501082_0272202 3300060353 Bacteria 1474
179 Ga0496115_0308937
180 JGI25407J50210_10007510
181 Ga0070658_10070158
182 Ga0070683_100131922
183 Ga0070680_100000001
184 Ga0070661_100137745
185 Ga0070714_100145464
186 Ga0070711_100039074
187 Ga0070705_100061057
188 Ga0070708_100000714
189 Ga0070681_10132491
190 Ga0070706_100004085
191 Ga0070706_100310515
192 Ga0070707_100015752
193 Ga0070707_100027499
194 Ga0070698_100302612
195 Ga0070679_100258985
196 Ga0070684_100397863
197 Ga0070686_100011833
198 Ga0070686_100082307
199 Ga0070696_100004584
200 Ga0070696_100118000
201 Ga0068855_100090782
202 Ga0068854_100201288
203 Ga0068856_100149268
204 Ga0070702_100134790
205 Ga0068860_100116535
206 Ga0081538_10001932
207 Ga0081538_10011841
208 Ga0081540_1002467
209 Ga0070715_10124982
210 Ga0070712_100102758
211 Ga0097621_100289109
212 Ga0075428_100023761
213 Ga0068865_100052050
214 Ga0075436_100108301
215 Ga0075435_100020992
216 Ga0105240_10190411
217 Ga0111539_10009880
218 Ga0114129_10222638
219 Ga0105243_10356056
220 Ga0105241_10078301
221 Ga0105248_10102936
222 Ga0105248_10150272
223 Ga0105238_10152962
224 Ga0157373_10174982
225 Ga0157370_10021254
226 Ga0157370_10162054
227 Ga0157369_10023678
228 Ga0157372_10721969
229 Ga0157375_10545571
230 Ga0182008_10007677
231 Ga0157376_10009515
232 Ga0182006_1006915
233 Ga0206354_10982323
234 Ga0206353_10890547
235 Ga0207684_10005712
236 Ga0207707_10083232
237 Ga0207695_10242854
238 Ga0207693_10098118
239 Ga0207693_10103149
240 Ga0207663_10031246
241 Ga0207663_10232807
242 Ga0207660_10000001
243 Ga0207660_10176431
244 Ga0207662_10030402
245 Ga0207657_10007449
246 Ga0207646_10002272
247 Ga0207646_10139927
248 Ga0207664_10320496
249 Ga0207661_10092020
250 Ga0207661_10113372
251 Ga0207708_10126429
252 Ga0207648_10253123
253 Ga0207674_10027258
254 Ga0207683_10053495
255 Ga0207683_10401509
256 Ga0207428_10082513
257 Ga0265319_1007297
258 Ga0265319_1008089
259 Ga0265318_10015872
260 Ga0265338_10028443
261 Ga0265330_10060812
262 Ga0265328_10079690
263 Ga0265320_10026798
264 Ga0265340_10043495
265 Ga0265327_10116229
266 Ga0265316_10009715
267 Ga0265313_10010019
268 Ga0265314_10034910
269 Ga0265342_10032151
270 Ga0373943_0075418
271 Ga0373955_0070325
272 Ga0395899_0208514
273 Ga0395900_0012225
274 Ga0395900_0017885
275 Ga0395900_0035325
276 Ga0395900_0438121
277 Ga0395898_0022827
278 Ga0395898_0025460
279 Ga0395898_0031419
280 Ga0395898_0104261
281 Ga0395905_0016685
282 Ga0395901_0010528
283 Ga0395901_0046872
284 Ga0395901_0127275
285 Ga0395901_0169847
286 Ga0395901_0192743
287 Ga0395901_0446178
288 Ga0436360_0162326
289 Ga0451853_0346139
290 Ga0439446_0005881
291 Ga0439434_0011252
292 Ga0451577_0180746
293 Ga0453683_0005587
294 Ga0453683_0064755
295 Ga0466966_0062039
296 Ga0466963_0002833
297 Ga0466963_0062452
298 Ga0466957_0030107
299 Ga0466957_0069586
300 Ga0466957_0135206
301 Ga0451576_0232954
302 Ga0466958_0010126
303 Ga0466967_0089427
304 Ga0466967_0148937
305 Ga0495592_0268090
306 Ga0495651_0004465
307 Ga0495630_0111583
308 Ga0495630_0244146
309 Ga0495588_0125922
310 Ga0495581_0052049
311 Ga0495604_0050069
312 Ga0495674_0054663
313 Ga0495674_0067107
314 Ga0495676_0216975
315 Ga0495680_0014409
316 Ga0496100_0006237
317 Ga0496100_0017303
318 Ga0496101_0005485
319 Ga0496101_0071292
320 Ga0496104_0203561
321 Ga0496105_0005998
322 Ga0496105_0026619
323 Ga0496105_0315371
324 Ga0496106_0031258
325 Ga0496106_0209217
326 Ga0496107_0019930
327 Ga0496108_0041265
328 Ga0496108_0095415
329 Ga0496109_0084822
330 Ga0496109_0215130
331 Ga0496111_0031118
332 Ga0496112_0024742
333 Ga0496113_0217942
334 Ga0496114_0027471
335 Ga0496114_0080680
336 Ga0496114_0145102
337 Ga0496114_0208399
338 Ga0501034_0021511
339 Ga0501047_0392072
340 Ga0501048_0314209
341 Ga0501067_0008948
342 Ga0501069_0039106
343 Ga0501070_0001690
344 Ga0501070_0014571
345 Ga0501073_0015206
346 Ga0501074_0030322
347 Ga0501077_0124070
348 Ga0501079_0154546
349 Ga0501080_0000790
350 Ga0501083_0001358
351 Ga0501044_0267117
352 nmdc:mga05p37_742333_c1
353 nmdc:mga08y16_45884_c1
354 nmdc:mga0rr50_103409_c1
355 nmdc:mga0a205_359295_c1
356 Ga0501082_0272202

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05544

Pro_racemase

Proline racemase

1

282

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4k7g-assembly1.cif.gz_B crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site 0.9469 6 338
6j7c-assembly1.cif.gz_A-2 crystal structure of proline racemase-like protein from thermococcus litoralis in complex with proline 0.9321 6 335
4lb0-assembly1.cif.gz_A crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline 0.932 1 339
8a4r-assembly1.cif.gz_CCC-2 proline racemase (pror) from the gram-positive bacterium acetoanaerobium sticklandii from isotropic orthorhombic data at 3.59 a 0.9315 1 334
4k7g-assembly1.cif.gz_B crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site 0.9306 6 338
ID Description Score Start End Superfamily
4q2hB02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9461 145 308 3.10.310.10
af_Q96EM0_162_315_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.937 145 296 3.10.310.10
4q2hB02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9292 145 308 3.10.310.10
4k7gD02 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9269 145 316 3.10.310.10
af_Q868H8_133_298_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9257 144 292 3.10.310.10
ID Description Score Start End GO Terms
AF-A0A7S3UKS8-F1-model_v4 Uncharacterized protein 0.9759 80 226 GO:0047580
AF-A0A3C1B8S2-F1-model_v4 Proline racemase 0.9757 63 233 GO:0047580
AF-A0A2V6RHL0-F1-model_v4 Proline racemase 0.9671 94 169 GO:0003824
AF-A0A383BA38-F1-model_v4 Proline racemase 0.9651 63 303 GO:0047580
AF-A0A5N6T4X1-F1-model_v4 Proline racemase family 0.9643 90 334 GO:0047580

Map