F272490

General Info

Members Datasets Scaffolds Average Seq Length
178 102 177 425

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0008410|Ga0451576_0008410_7180_8637
Length 485
Sequence VVGRALCPPVWAIVELAGIKRAPQQPTIRNQQTRVTRTSHQKFLLNFFAPTRLLYSDFSMSSVSDQLFDRARQLIPGGVNSPVRAFRSVGGAPFFVKAARGATLITADDRELIDFVCTWGPAIHGHNHPRIKAAIATALENGTSFGTPNPYEVEMAELIVKFFPSIQKVRMCNSGTEATMSAIRLARGFTRRDKIIKFAGCYHGHSDSLLIKAGSGALTHGNPDSAGVPASFALETVVVNYNDRAALAAAFAANPGQIAGVIIEAYCGNVGFIRPDEGYLAAVRELCTANGALLIFDEVMTGFRIARGGVQERERITPDLTCLGKIIGGGLPVGAFGGRAEIMDQLAPLGPVYQAGTLSGNPLAMAAGIAALKLLDELNPYERLDQLGRQLKEAVLAAAQRKGLPIQVPQCGSMFSIFFTASPVRDYASALTSDAKLFARFFHACLGRGVYLAPSAYEAGFLSTAHEGSAIARACEVLAMSILEL

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
6 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
7 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
23 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
24 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
25 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
26 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
28 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
29 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
30 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
44 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
45 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
46 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
47 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
50 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
51 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
52 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
53 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
54 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
55 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
56 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
57 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
58 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
59 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
60 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
61 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
62 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
63 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
64 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
65 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
66 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
67 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
68 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
69 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
70 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
71 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
72 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
89 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
90 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
91 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
92 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
93 3300049667 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control Metagenome Rhizosphere
94 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
95 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
96 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
97 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
101 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
102 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.44
Metatranscriptomes 0
Isolates 0.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.11
Nodule 0
Rhizoplane 0
Rhizosphere 87.08
Stem 0
Stem Tuber 0
Unclassified 2.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10012682 3300003187 Bacteria 3824
2 rootH2_10010176 3300003320 Bacteria 9700
3 rootH2_10071690 3300003320 Bacteria 6240
4 rootH1_10225995 3300003323 Bacteria 2111
5 Ga0055526_1013563 3300003771 Bacteria 3434
6 Ga0055536_1028915 3300003781 Bacteria 1499
7 Ga0055530_10006318 3300003791 Bacteria 5324
8 Ga0055531_10013976 3300003794 Bacteria 3656
9 Ga0068869_100000562 3300005334 Bacteria 20828
10 Ga0070713_100044714 3300005436 Bacteria 3626
11 Ga0070708_100034528 3300005445 Unclassified 4401
12 Ga0070681_10004695 3300005458 Bacteria 13072
13 Ga0068867_100005968 3300005459 Bacteria 8637
14 Ga0070707_100000019 3300005468 Bacteria 132161
15 Ga0070707_100125247 3300005468 Bacteria 2496
16 Ga0070684_100105201 3300005535 Bacteria 2525
17 Ga0070697_100009135 3300005536 Bacteria 7745
18 Ga0070697_100010116 3300005536 Bacteria 7359
19 Ga0070697_100147369 3300005536 Bacteria 1982
20 Ga0068857_100157700 3300005577 Bacteria 2058
21 Ga0068856_100005821 3300005614 Bacteria 12149
22 Ga0070717_10000648 3300006028 Bacteria 22345
23 Ga0070716_100061384 3300006173 Bacteria 2175
24 Ga0068871_100003980 3300006358 Bacteria 10211
25 Ga0099794_10006363 3300007265 Archaea 4777
26 Ga0209673_1012589 3300025273 Bacteria 3399
27 Ga0209130_1008879 3300025284 Bacteria 2920
28 Ga0209675_1008903 3300025291 Bacteria 3610
29 Ga0209675_1012828 3300025291 Bacteria 2670
30 Ga0209676_1000830 3300025292 Bacteria 40120
31 Ga0209676_1006269 3300025292 Bacteria 5919
32 Ga0209676_1012843 3300025292 Bacteria 3256
33 Ga0209025_1010033 3300025294 Bacteria 6485
34 Ga0209564_1014151 3300025295 Bacteria 3339
35 Ga0209758_1034612 3300025297 Bacteria 2006
36 Ga0209050_1002489 3300025298 Bacteria 15573
37 Ga0209257_1000499 3300025304 Bacteria 70103
38 Ga0207707_10132378 3300025912 Bacteria 2181
39 Ga0207660_10055881 3300025917 Bacteria 2823
40 Ga0207652_10064591 3300025921 Bacteria 3167
41 Ga0207646_10000001 3300025922 Bacteria 1242027
42 Ga0207646_10000006 3300025922 Bacteria 510716
43 Ga0207646_10010529 3300025922 Archaea 9026
44 Ga0207646_10087142 3300025922 Bacteria 2794
45 Ga0207700_10022968 3300025928 Bacteria 4289
46 Ga0207704_10002670 3300025938 Bacteria 8045
47 Ga0207689_10002303 3300025942 Bacteria 17869
48 Ga0207661_10027405 3300025944 Bacteria 4352
49 Ga0207702_10004399 3300026078 Bacteria 12550
50 Ga0207648_10016915 3300026089 Bacteria 6647
51 Ga0209588_1000978 3300027671 Bacteria 7338
52 Ga0209588_1011656 3300027671 Archaea 2659
53 Ga0265337_1000283 3300028556 Bacteria 27564
54 Ga0265337_1003931 3300028556 Bacteria 6294
55 Ga0265319_1000185 3300028563 Bacteria 47249
56 Ga0265319_1001291 3300028563 Bacteria 15157
57 Ga0265319_1006103 3300028563 Bacteria 5642
58 Ga0265319_1007144 3300028563 Bacteria 5061
59 Ga0265318_10001041 3300028577 Bacteria 17593
60 Ga0265318_10002994 3300028577 Bacteria 8728
61 Ga0265323_10000029 3300028653 Bacteria 78081
62 Ga0265323_10006645 3300028653 Bacteria 4851
63 Ga0265323_10007757 3300028653 Bacteria 4443
64 Ga0265323_10021902 3300028653 Bacteria 2445
65 Ga0265322_10002119 3300028654 Bacteria 6206
66 Ga0265322_10003523 3300028654 Bacteria 4720
67 Ga0265338_10000082 3300028800 Bacteria 176343
68 Ga0265324_10013491 3300029957 Bacteria 3047
69 Ga0265324_10018433 3300029957 Bacteria 2524
70 Ga0265330_10023101 3300031235 Bacteria 2826
71 Ga0265330_10043136 3300031235 Bacteria 1997
72 Ga0265332_10012058 3300031238 Bacteria 3837
73 Ga0265320_10000776 3300031240 Bacteria 24440
74 Ga0265320_10001050 3300031240 Bacteria 20519
75 Ga0265320_10003491 3300031240 Bacteria 10538
76 Ga0265320_10003920 3300031240 Bacteria 9834
77 Ga0265320_10009787 3300031240 Bacteria 5750
78 Ga0265325_10003776 3300031241 Bacteria 9774
79 Ga0265340_10015090 3300031247 Bacteria 4020
80 Ga0265331_10065119 3300031250 Bacteria 1714
81 Ga0265327_10001512 3300031251 Bacteria 28745
82 Ga0265327_10002348 3300031251 Bacteria 20176
83 Ga0265327_10003895 3300031251 Bacteria 13731
84 Ga0265327_10027973 3300031251 Bacteria 3235
85 Ga0265327_10054741 3300031251 Bacteria 2063
86 Ga0265316_10005603 3300031344 Bacteria 12165
87 Ga0265316_10036196 3300031344 Bacteria 3992
88 Ga0265316_10053945 3300031344 Bacteria 3148
89 Ga0265316_10066503 3300031344 Bacteria 2789
90 Ga0265316_10081037 3300031344 Bacteria 2488
91 Ga0265316_10160827 3300031344 Bacteria 1679
92 Ga0307408_100000017 3300031548 Bacteria 355890
93 Ga0307408_100000780 3300031548 Bacteria 25626
94 Ga0265313_10000337 3300031595 Bacteria 50974
95 Ga0265313_10000538 3300031595 Bacteria 39535
96 Ga0265313_10003199 3300031595 Bacteria 13483
97 Ga0265313_10009844 3300031595 Bacteria 6151
98 Ga0265313_10046032 3300031595 Bacteria 2120
99 Ga0307508_10000157 3300031616 Bacteria 81275
100 Ga0265314_10001000 3300031711 Bacteria 33137
101 Ga0265314_10002697 3300031711 Bacteria 17782
102 Ga0265314_10017666 3300031711 Bacteria 5590
103 Ga0265314_10069103 3300031711 Bacteria 2371
104 Ga0265342_10005207 3300031712 Bacteria 9988
105 Ga0265342_10014105 3300031712 Bacteria 5315
106 Ga0265342_10038788 3300031712 Bacteria 2899
107 Ga0265342_10043267 3300031712 Bacteria 2718
108 Ga0307407_10011435 3300031903 Bacteria 4224
109 Ga0307409_100000021 3300031995 Bacteria 54572
110 Ga0307416_100000391 3300032002 Bacteria 22691
111 Ga0307416_100035445 3300032002 Bacteria 3810
112 Ga0395905_0000015 3300037471 Bacteria 393880
113 Ga0450892_000008 3300042130 Bacteria 21164
114 Ga0450893_0000930 3300042532 Bacteria 4392
115 Ga0451577_0000012 3300042876 Bacteria 575467
116 Ga0451577_0002923 3300042876 Bacteria 19591
117 Ga0451577_0109535 3300042876 Bacteria 2470
118 Ga0466972_0008970 3300044658 Bacteria 5018
119 Ga0453683_0000658 3300044673 Bacteria 36964
120 Ga0466965_0001663 3300044683 Bacteria 9119
121 Ga0453684_0000001 3300044712 Bacteria 2623166
122 Ga0453684_0002874 3300044712 Bacteria 40400
123 Ga0453684_0443380 3300044712 Bacteria 1446
124 Ga0451576_0000162 3300045051 Bacteria 170196
125 Ga0451576_0002546 3300045051 Bacteria 26948
126 Ga0451576_0008410 3300045051 Bacteria 12113
127 Ga0451576_0050444 3300045051 Bacteria 4364
128 Ga0451576_0128408 3300045051 Bacteria 2642
129 Ga0501031_0002615 3300049568 Bacteria 11464
130 Ga0501032_0000217 3300049569 Bacteria 47829
131 Ga0501032_0001195 3300049569 Bacteria 20751
132 Ga0501032_0179072 3300049569 Bacteria 1388
133 Ga0501033_0000307 3300049570 Bacteria 46225
134 Ga0501034_0137166 3300049571 Bacteria 2427
135 Ga0501036_0005480 3300049572 Bacteria 10289
136 Ga0501037_0002354 3300049573 Bacteria 13658
137 Ga0501037_0010958 3300049573 Bacteria 6666
138 Ga0501038_0007129 3300049574 Bacteria 10328
139 Ga0501039_0021603 3300049575 Bacteria 4937
140 Ga0501042_0001734 3300049578 Bacteria 13044
141 Ga0501043_0006723 3300049579 Bacteria 9181
142 Ga0501043_0052594 3300049579 Bacteria 3198
143 Ga0501046_0003832 3300049580 Bacteria 13761
144 Ga0501046_0036888 3300049580 Bacteria 3931
145 Ga0501046_0092335 3300049580 Bacteria 2328
146 Ga0501046_0109425 3300049580 Bacteria 2112
147 Ga0501047_0018353 3300049581 Bacteria 6705
148 Ga0501047_0019097 3300049581 Bacteria 6576
149 Ga0501047_0036210 3300049581 Bacteria 4768
150 Ga0501047_0148488 3300049581 Bacteria 2220
151 Ga0501047_0291232 3300049581 Bacteria 1476
152 Ga0501048_0001510 3300049582 Bacteria 17615
153 Ga0501048_0045083 3300049582 Bacteria 3151
154 Ga0501069_0000499 3300049585 Bacteria 17869
155 Ga0501070_0000922 3300049586 Bacteria 26611
156 Ga0501070_0047016 3300049586 Bacteria 3589
157 Ga0501070_0189736 3300049586 Bacteria 1690
158 Ga0501073_0000119 3300049589 Bacteria 50663
159 Ga0501074_0000634 3300049590 Bacteria 21786
160 Ga0501227_000339 3300049665 Bacteria 9827
161 Ga0501230_000387 3300049667 Bacteria 4250
162 Ga0501235_020609 3300049669 Bacteria 1464
163 Ga0501079_0006014 3300049741 Bacteria 9092
164 Ga0501080_0002188 3300049742 Bacteria 16986
165 Ga0501083_0007141 3300049744 Bacteria 7930
166 Ga0501083_0032938 3300049744 Bacteria 3550
167 Ga0501035_0003562 3300049822 Bacteria 14872
168 Ga0501035_0011451 3300049822 Bacteria 8223
169 Ga0501035_0247686 3300049822 Bacteria 1514
170 Ga0501044_0000299 3300049823 Bacteria 62791
171 Ga0501044_0002188 3300049823 Bacteria 22426
172 Ga0501044_0041210 3300049823 Bacteria 4807
173 Ga0501044_0195785 3300049823 Bacteria 1981
174 Ga0501045_0027205 3300049824 Bacteria 4119
175 Ga0500568_0010020 3300053139 Bacteria 4467
176 Ga0501082_0026054 3300060353 Bacteria 5041
177 Ga0501082_0061824 3300060353 Bacteria 3223

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049581 Ga0501047_0291232 Ga0501047_0291232_57_1280 407
2 3300049822 Ga0501035_0247686 Ga0501035_0247686_209_1432 407
3 3300028653 Ga0265323_10021902 Ga0265323_100219022 412
4 3300031595 Ga0265313_10000337 Ga0265313_100003379 414
5 3300031712 Ga0265342_10005207 Ga0265342_100052072 414
6 3300053139 Ga0500568_0010020 Ga0500568_0010020_1695_2972 414
7 3300028556 Ga0265337_1000283 Ga0265337_10002839 415
8 3300028563 Ga0265319_1006103 Ga0265319_10061033 415
9 3300028800 Ga0265338_10000082 Ga0265338_1000008229 415
10 3300029957 Ga0265324_10013491 Ga0265324_100134912 415
11 3300031238 Ga0265332_10012058 Ga0265332_100120582 415
12 3300031240 Ga0265320_10003920 Ga0265320_100039209 415
13 3300031241 Ga0265325_10003776 Ga0265325_100037764 415
14 3300031247 Ga0265340_10015090 Ga0265340_100150902 415
15 3300031344 Ga0265316_10160827 Ga0265316_101608271 415
16 3300031712 Ga0265342_10043267 Ga0265342_100432672 415
17 3300042876 Ga0451577_0000012 Ga0451577_0000012_111139_112416 415
18 3300045051 Ga0451576_0050444 Ga0451576_0050444_1868_3145 415
19 3300049571 Ga0501034_0137166 Ga0501034_0137166_142_1422 415
20 3300028653 Ga0265323_10000029 Ga0265323_100000296 416
21 3300028653 Ga0265323_10006645 Ga0265323_100066452 416
22 3300028654 Ga0265322_10002119 Ga0265322_100021194 416
23 3300028654 Ga0265322_10003523 Ga0265322_100035232 416
24 3300031235 Ga0265330_10023101 Ga0265330_100231012 416
25 3300031344 Ga0265316_10081037 Ga0265316_100810372 416
26 3300031595 Ga0265313_10009844 Ga0265313_100098442 416
27 3300031595 Ga0265313_10046032 Ga0265313_100460321 416
28 3300031712 Ga0265342_10014105 Ga0265342_100141053 416
29 3300031712 Ga0265342_10038788 Ga0265342_100387882 416
30 3300005334 Ga0068869_100000562 Ga0068869_10000056217 417
31 3300005459 Ga0068867_100005968 Ga0068867_1000059683 417
32 3300006358 Ga0068871_100003980 Ga0068871_1000039808 417
33 3300025938 Ga0207704_10002670 Ga0207704_100026705 417
34 3300025942 Ga0207689_10002303 Ga0207689_1000230317 417
35 3300026089 Ga0207648_10016915 Ga0207648_100169152 417
36 3300028563 Ga0265319_1000185 Ga0265319_10001853 417
37 3300028563 Ga0265319_1001291 Ga0265319_10012912 417
38 3300028556 Ga0265337_1003931 Ga0265337_10039315 418
39 3300031240 Ga0265320_10003491 Ga0265320_100034918 418
40 3300031251 Ga0265327_10003895 Ga0265327_100038952 418
41 3300031344 Ga0265316_10005603 Ga0265316_100056035 418
42 3300031711 Ga0265314_10001000 Ga0265314_1000100032 418
43 3300049580 Ga0501046_0092335 Ga0501046_0092335_128_1405 418
44 3300005436 Ga0070713_100044714 Ga0070713_1000447142 419
45 3300025928 Ga0207700_10022968 Ga0207700_100229682 419
46 3300037471 Ga0395905_0000015 Ga0395905_0000015_78287_79570 419
47 3300005535 Ga0070684_100105201 Ga0070684_1001052011 420
48 3300025944 Ga0207661_10027405 Ga0207661_100274051 420
49 3300049569 Ga0501032_0000217 Ga0501032_0000217_34059_35348 420
50 3300049580 Ga0501046_0036888 Ga0501046_0036888_788_2077 420
51 3300049581 Ga0501047_0148488 Ga0501047_0148488_896_2185 420
52 3300049822 Ga0501035_0011451 Ga0501035_0011451_2010_3299 420
53 3300049823 Ga0501044_0000299 Ga0501044_0000299_18587_19876 420
54 iso_pu_bacteria 2786546940 2788436690 421
55 3300028653 Ga0265323_10007757 Ga0265323_100077573 424
56 3300031344 Ga0265316_10053945 Ga0265316_100539453 424
57 3300031344 Ga0265316_10066503 Ga0265316_100665032 424
58 3300042876 Ga0451577_0109535 Ga0451577_0109535_324_1598 424
59 3300044712 Ga0453684_0443380 Ga0453684_0443380_143_1417 424
60 3300045051 Ga0451576_0002546 Ga0451576_0002546_14277_15551 424
61 3300003320 rootH2_10071690 rootH2_100716903 425
62 3300005445 Ga0070708_100034528 Ga0070708_1000345282 425
63 3300005468 Ga0070707_100000019 Ga0070707_100000019120 425
64 3300005536 Ga0070697_100009135 Ga0070697_1000091353 425
65 3300005536 Ga0070697_100010116 Ga0070697_1000101165 425
66 3300005536 Ga0070697_100147369 Ga0070697_1001473693 425
67 3300006028 Ga0070717_10000648 Ga0070717_100006489 425
68 3300007265 Ga0099794_10006363 Ga0099794_100063634 425
69 3300025922 Ga0207646_10000001 Ga0207646_10000001907 425
70 3300025922 Ga0207646_10000006 Ga0207646_10000006330 425
71 3300025922 Ga0207646_10010529 Ga0207646_100105292 425
72 3300027671 Ga0209588_1000978 Ga0209588_10009782 425
73 3300027671 Ga0209588_1011656 Ga0209588_10116562 425
74 3300028563 Ga0265319_1007144 Ga0265319_10071442 425
75 3300028577 Ga0265318_10002994 Ga0265318_100029942 425
76 3300031235 Ga0265330_10043136 Ga0265330_100431362 425
77 3300031240 Ga0265320_10000776 Ga0265320_100007766 425
78 3300031240 Ga0265320_10001050 Ga0265320_1000105012 425
79 3300031251 Ga0265327_10001512 Ga0265327_1000151210 425
80 3300031251 Ga0265327_10054741 Ga0265327_100547412 425
81 3300031344 Ga0265316_10036196 Ga0265316_100361963 425
82 3300031595 Ga0265313_10000538 Ga0265313_1000053839 425
83 3300045051 Ga0451576_0000162 Ga0451576_0000162_124271_125548 425
84 3300049669 Ga0501235_020609 Ga0501235_020609_19_1296 425
85 3300049744 Ga0501083_0007141 Ga0501083_0007141_2778_4055 425
86 3300049744 Ga0501083_0032938 Ga0501083_0032938_1229_2506 425
87 3300049823 Ga0501044_0002188 Ga0501044_0002188_6424_7701 425
88 3300060353 Ga0501082_0061824 Ga0501082_0061824_17_1294 425
89 3300003320 rootH2_10010176 rootH2_100101763 426
90 3300003323 rootH1_10225995 rootH1_102259952 426
91 3300005577 Ga0068857_100157700 Ga0068857_1001577002 426
92 3300005614 Ga0068856_100005821 Ga0068856_1000058212 426
93 3300026078 Ga0207702_10004399 Ga0207702_100043998 426
94 3300044673 Ga0453683_0000658 Ga0453683_0000658_21013_22293 426
95 3300049665 Ga0501227_000339 Ga0501227_000339_1784_3064 426
96 3300049667 Ga0501230_000387 Ga0501230_000387_841_2121 426
97 3300005458 Ga0070681_10004695 Ga0070681_100046959 427
98 3300006173 Ga0070716_100061384 Ga0070716_1000613842 427
99 3300025912 Ga0207707_10132378 Ga0207707_101323782 427
100 3300025917 Ga0207660_10055881 Ga0207660_100558811 427
101 3300025921 Ga0207652_10064591 Ga0207652_100645913 427
102 3300028577 Ga0265318_10001041 Ga0265318_100010418 427
103 3300029957 Ga0265324_10018433 Ga0265324_100184333 427
104 3300031240 Ga0265320_10009787 Ga0265320_100097873 427
105 3300031250 Ga0265331_10065119 Ga0265331_100651191 427
106 3300031251 Ga0265327_10002348 Ga0265327_100023485 427
107 3300031251 Ga0265327_10027973 Ga0265327_100279732 427
108 3300031548 Ga0307408_100000017 Ga0307408_100000017205 427
109 3300031548 Ga0307408_100000780 Ga0307408_1000007809 427
110 3300031595 Ga0265313_10003199 Ga0265313_100031994 427
111 3300031616 Ga0307508_10000157 Ga0307508_1000015741 427
112 3300031711 Ga0265314_10002697 Ga0265314_100026973 427
113 3300031711 Ga0265314_10017666 Ga0265314_100176665 427
114 3300031711 Ga0265314_10069103 Ga0265314_100691032 427
115 3300031903 Ga0307407_10011435 Ga0307407_100114352 427
116 3300031995 Ga0307409_100000021 Ga0307409_10000002150 427
117 3300032002 Ga0307416_100000391 Ga0307416_10000039120 427
118 3300032002 Ga0307416_100035445 Ga0307416_1000354453 427
119 3300042130 Ga0450892_000008 Ga0450892_000008_1014_2423 427
120 3300042532 Ga0450893_0000930 Ga0450893_0000930_1778_3187 427
121 3300042876 Ga0451577_0002923 Ga0451577_0002923_12496_13782 427
122 3300044658 Ga0466972_0008970 Ga0466972_0008970_57_1343 427
123 3300044683 Ga0466965_0001663 Ga0466965_0001663_1968_3254 427
124 3300044712 Ga0453684_0000001 Ga0453684_0000001_1526468_1527754 427
125 3300044712 Ga0453684_0002874 Ga0453684_0002874_11294_12580 427
126 3300045051 Ga0451576_0008410 Ga0451576_0008410_7180_8637 427
127 3300045051 Ga0451576_0128408 Ga0451576_0128408_1217_2566 427
128 3300049568 Ga0501031_0002615 Ga0501031_0002615_2225_3511 427
129 3300049569 Ga0501032_0001195 Ga0501032_0001195_12127_13413 427
130 3300049569 Ga0501032_0179072 Ga0501032_0179072_75_1358 427
131 3300049570 Ga0501033_0000307 Ga0501033_0000307_24924_26207 427
132 3300049572 Ga0501036_0005480 Ga0501036_0005480_470_1756 427
133 3300049573 Ga0501037_0002354 Ga0501037_0002354_2473_3759 427
134 3300049573 Ga0501037_0010958 Ga0501037_0010958_3415_4698 427
135 3300049574 Ga0501038_0007129 Ga0501038_0007129_2360_3646 427
136 3300049575 Ga0501039_0021603 Ga0501039_0021603_2680_3966 427
137 3300049578 Ga0501042_0001734 Ga0501042_0001734_5251_6537 427
138 3300049579 Ga0501043_0006723 Ga0501043_0006723_6038_7324 427
139 3300049580 Ga0501046_0003832 Ga0501046_0003832_7004_8290 427
140 3300049580 Ga0501046_0109425 Ga0501046_0109425_617_1900 427
141 3300049581 Ga0501047_0018353 Ga0501047_0018353_4669_5952 427
142 3300049581 Ga0501047_0019097 Ga0501047_0019097_4111_5397 427
143 3300049581 Ga0501047_0036210 Ga0501047_0036210_2701_3990 427
144 3300049582 Ga0501048_0001510 Ga0501048_0001510_8519_9805 427
145 3300049582 Ga0501048_0045083 Ga0501048_0045083_75_1358 427
146 3300049585 Ga0501069_0000499 Ga0501069_0000499_12866_14155 427
147 3300049586 Ga0501070_0000922 Ga0501070_0000922_13523_14812 427
148 3300049586 Ga0501070_0047016 Ga0501070_0047016_212_1495 427
149 3300049586 Ga0501070_0189736 Ga0501070_0189736_391_1680 427
150 3300049589 Ga0501073_0000119 Ga0501073_0000119_16128_17417 427
151 3300049590 Ga0501074_0000634 Ga0501074_0000634_5011_6300 427
152 3300049741 Ga0501079_0006014 Ga0501079_0006014_4775_6064 427
153 3300049742 Ga0501080_0002188 Ga0501080_0002188_60_1349 427
154 3300049822 Ga0501035_0003562 Ga0501035_0003562_5652_6938 427
155 3300049823 Ga0501044_0041210 Ga0501044_0041210_1664_2950 427
156 3300049823 Ga0501044_0195785 Ga0501044_0195785_60_1349 427
157 3300049824 Ga0501045_0027205 Ga0501045_0027205_1165_2451 427
158 3300060353 Ga0501082_0026054 Ga0501082_0026054_1852_3141 427
159 3300003187 JGI25151J46595_10012682 JGI25151J46595_100126824 428
160 3300003771 Ga0055526_1013563 Ga0055526_10135635 428
161 3300003781 Ga0055536_1028915 Ga0055536_10289151 428
162 3300003791 Ga0055530_10006318 Ga0055530_100063185 428
163 3300003794 Ga0055531_10013976 Ga0055531_100139763 428
164 3300005468 Ga0070707_100125247 Ga0070707_1001252473 428
165 3300025273 Ga0209673_1012589 Ga0209673_10125892 428
166 3300025284 Ga0209130_1008879 Ga0209130_10088794 428
167 3300025291 Ga0209675_1008903 Ga0209675_10089032 428
168 3300025291 Ga0209675_1012828 Ga0209675_10128282 428
169 3300025292 Ga0209676_1000830 Ga0209676_100083028 428
170 3300025292 Ga0209676_1006269 Ga0209676_10062694 428
171 3300025292 Ga0209676_1012843 Ga0209676_10128432 428
172 3300025294 Ga0209025_1010033 Ga0209025_10100334 428
173 3300025295 Ga0209564_1014151 Ga0209564_10141513 428
174 3300025297 Ga0209758_1034612 Ga0209758_10346122 428
175 3300025298 Ga0209050_1002489 Ga0209050_10024895 428
176 3300025304 Ga0209257_1000499 Ga0209257_10004994 428
177 3300025922 Ga0207646_10087142 Ga0207646_100871423 428
178 3300049579 Ga0501043_0052594 Ga0501043_0052594_1597_2883 428

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00202

Aminotran_3

Aminotransferase class-III

86

460

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hoy-assembly1.cif.gz_A inter-subunit signaling in gsam 0.9889 1 425
2hoy-assembly1.cif.gz_B inter-subunit signaling in gsam 0.9887 1 425
2hp1-assembly1.cif.gz_B inter-subunit signaling in gsam 0.9871 1 426
2hp1-assembly1.cif.gz_A inter-subunit signaling in gsam 0.9869 1 426
4gsa-assembly1.cif.gz_A crystal structure of glutamate-1-semialdehyde aminomutase (aminotransferase) reduced with cyanoborohydrate 0.9869 1 425
ID Description Score Start End Superfamily
af_P23893_318_423_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.992 320 423 3.90.1150.10
5i92D01 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.98 5 426 3.90.1150.10
af_Q2FXR4_335_426_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9798 337 426 3.90.1150.10
af_P45621_365_458_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9774 326 418 3.90.1150.10
2gsaA02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9764 71 318 3.40.640.10
ID Description Score Start End GO Terms
AF-A0A355R5R7-F1-model_v4 Glutamate-1-semialdehyde 2,1-aminomutase (Glutamate-1-semialdehyde aminotransferase) 0.991 180 428 GO:0008483
GO:0030170
AF-A0A813BXZ7-F1-model_v4 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 0.9903 9 426 GO:0005247
GO:0006782
GO:0008483
GO:0016020
GO:0030170
GO:0042286
AF-A0A2V7KVM8-F1-model_v4 Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (EC 5.4.3.8) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) 0.9902 5 427 GO:0005737
GO:0006782
GO:0008483
GO:0030170
GO:0042286
AF-A0A7S3X2I9-F1-model_v4 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 0.9897 1 426 GO:0006782
GO:0008483
GO:0030170
GO:0042286
AF-A0A5N5KBZ1-F1-model_v4 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 0.9897 10 426 GO:0006782
GO:0008483
GO:0009507
GO:0015995
GO:0030170
GO:0042286

Feature Viewer

pLDDT pTM Quality
91.56 0.92 High
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Predicted Structure (AlphaFold2)

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