F272157

General Info

Members Datasets Scaffolds Average Seq Length
178 77 179 240

Family's Representative Sequence

Representative Sequence 3300025940|Ga0207691_10276543|Ga0207691_102765432
Length 295
Sequence MIEAHLKKLRVRDEISPDEEQAIRDLPAQIIEVPADRTVIRHGEEVTNSTLLLDGWMARAKDLRSGQRQLAELHVAGDFTDLHGFTLKRLDHDVISITRCRIALVPHERLQALTERYPHIARVYWLMTNMDAAIQREWTLSLGRRTAIARMAHLFCELNVRLEISGLAEGGRYEFPLTQVELSECLGVTPVHVNRTLQELRRMSLVELQNQYRDDLVILGLSVDDPVEKMRPYAAEYQINYPLLVGNGREDVQEAFGPLYGIPVSVIIDREGNIAKKHSGIATKAQFEREIKALL

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
24 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
27 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
28 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
49 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
50 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
51 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
52 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
53 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
54 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
55 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
56 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
57 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
58 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
59 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
62 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
63 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
64 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
65 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
66 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
67 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
68 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
69 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
70 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
71 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
72 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
73 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
74 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
75 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
76 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
77 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.69
Rhizosphere 97.75
Stem 0
Stem Tuber 0
Unclassified 0.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10096314 3300003316 Bacteria 1563
2 rootH1_10096314 3300003323 Bacteria 2650
3 Ga0070658_10585514 3300005327 Bacteria 966
4 Ga0070670_100087034 3300005331 Bacteria 2685
5 Ga0070670_100669071 3300005331 Bacteria 932
6 Ga0070677_10000152 3300005333 Bacteria 23267
7 Ga0070666_10206928 3300005335 Bacteria 1381
8 Ga0070680_100222906 3300005336 Bacteria 1592
9 Ga0070660_100022053 3300005339 Bacteria 4705
10 Ga0070661_100007552 3300005344 Bacteria 7502
11 Ga0070661_100082946 3300005344 Unclassified 2368
12 Ga0070674_100148941 3300005356 Bacteria 1764
13 Ga0070659_100076529 3300005366 Bacteria 2668
14 Ga0070659_100684458 3300005366 Bacteria 886
15 Ga0070714_100026052 3300005435 Bacteria 4831
16 Ga0070663_100084023 3300005455 Bacteria 2345
17 Ga0070663_100249163 3300005455 Bacteria 1405
18 Ga0070678_100024102 3300005456 Bacteria 4067
19 Ga0070678_100054705 3300005456 Bacteria 2910
20 Ga0070662_100017722 3300005457 Bacteria 4805
21 Ga0070662_100103528 3300005457 Bacteria 2159
22 Ga0070681_10050349 3300005458 Bacteria 4156
23 Ga0070681_10387748 3300005458 Bacteria 1308
24 Ga0068867_100302360 3300005459 Bacteria 1319
25 Ga0070679_100023319 3300005530 Bacteria 6055
26 Ga0070679_100146656 3300005530 Bacteria 2337
27 Ga0068855_100036317 3300005563 Bacteria 5866
28 Ga0068855_100052930 3300005563 Bacteria 4778
29 Ga0068855_100286327 3300005563 Bacteria 1828
30 Ga0070664_100027490 3300005564 Bacteria 4728
31 Ga0070664_100099971 3300005564 Bacteria 2521
32 Ga0070664_100624011 3300005564 Bacteria 1001
33 Ga0068856_100019325 3300005614 Bacteria 6613
34 Ga0068856_100236272 3300005614 Bacteria 1843
35 Ga0068852_100028330 3300005616 Bacteria 4582
36 Ga0068852_100098523 3300005616 Bacteria 2633
37 Ga0068852_100282889 3300005616 Bacteria 1600
38 Ga0097621_100924474 3300006237 Unclassified 813
39 Ga0157373_10054741 3300013100 Bacteria 2834
40 Ga0157373_10078510 3300013100 Bacteria 2328
41 Ga0157371_10024953 3300013102 Bacteria 4362
42 Ga0157370_10001896 3300013104 Bacteria 25732
43 Ga0157370_10087159 3300013104 Bacteria 2932
44 Ga0157369_10039638 3300013105 Bacteria 5147
45 Ga0157369_10293258 3300013105 Bacteria 1693
46 Ga0157374_10183119 3300013296 Bacteria 2047
47 Ga0182008_10157984 3300014497 Bacteria 1140
48 Ga0163161_10021249 3300017792 Bacteria 4562
49 Ga0207682_10001291 3300025893 Bacteria 11503
50 Ga0207647_10097577 3300025904 Bacteria 1747
51 Ga0207705_10004834 3300025909 Bacteria 10136
52 Ga0207707_10028914 3300025912 Bacteria 4844
53 Ga0207707_10335965 3300025912 Bacteria 1303
54 Ga0207660_10311991 3300025917 Bacteria 1254
55 Ga0207657_10019338 3300025919 Bacteria 6472
56 Ga0207649_10021182 3300025920 Bacteria 3738
57 Ga0207649_10563216 3300025920 Bacteria 873
58 Ga0207652_10024875 3300025921 Bacteria 4970
59 Ga0207650_10050268 3300025925 Bacteria 3082
60 Ga0207690_10023476 3300025932 Bacteria 3849
61 Ga0207706_10012371 3300025933 Bacteria 7774
62 Ga0207706_10024128 3300025933 Bacteria 5454
63 Ga0207706_10150918 3300025933 Bacteria 2043
64 Ga0207691_10108485 3300025940 Bacteria 2471
65 Ga0207691_10276543 3300025940 Bacteria 1445
66 Ga0207679_10279216 3300025945 Bacteria 1432
67 Ga0207679_10304398 3300025945 Bacteria 1375
68 Ga0207667_10044122 3300025949 Bacteria 4727
69 Ga0207667_10137788 3300025949 Bacteria 2513
70 Ga0207702_10026918 3300026078 Bacteria 4775
71 Ga0207702_10319494 3300026078 Bacteria 1478
72 Ga0207674_10003594 3300026116 Bacteria 18907
73 Ga0207674_10021644 3300026116 Bacteria 6923
74 Ga0207683_10026076 3300026121 Bacteria 5047
75 Ga0207698_10087981 3300026142 Bacteria 2532
76 Ga0307410_10125068 3300031852 Bacteria 1881
77 Ga0307409_100399886 3300031995 Bacteria 1312
78 Ga0373930_0019831 3300034816 Bacteria 1305
79 Ga0395899_0013321 3300037312 Bacteria 6291
80 Ga0395899_0017739 3300037312 Bacteria 5419
81 Ga0395899_0125765 3300037312 Bacteria 1833
82 Ga0395899_0369970 3300037312 Unclassified 954
83 Ga0395900_0004173 3300037418 Bacteria 15360
84 Ga0395900_0009298 3300037418 Bacteria 10077
85 Ga0395900_0049209 3300037418 Bacteria 4342
86 Ga0395900_0059270 3300037418 Bacteria 3941
87 Ga0395900_0070914 3300037418 Bacteria 3581
88 Ga0395900_0096614 3300037418 Bacteria 3035
89 Ga0395900_0306910 3300037418 Bacteria 1571
90 Ga0395900_0365132 3300037418 Unclassified 1414
91 Ga0395900_0536267 3300037418 Bacteria 1116
92 Ga0395900_0578998 3300037418 Bacteria 1064
93 Ga0395898_0081572 3300037466 Bacteria 3118
94 Ga0395898_0130258 3300037466 Unclassified 2410
95 Ga0395905_0005073 3300037471 Bacteria 13554
96 Ga0395905_0091824 3300037471 Bacteria 2846
97 Ga0395905_0169890 3300037471 Bacteria 2048
98 Ga0395905_0171079 3300037471 Bacteria 2040
99 Ga0395905_0801286 3300037471 Bacteria 845
100 Ga0395901_0076668 3300038443 Bacteria 3488
101 Ga0395901_0088217 3300038443 Bacteria 3244
102 Ga0395901_0345430 3300038443 Bacteria 1536
103 Ga0395901_0346787 3300038443 Bacteria 1533
104 Ga0395901_0462248 3300038443 Bacteria 1296
105 Ga0395901_0544157 3300038443 Bacteria 1177
106 Ga0466969_0081122 3300044656 Unclassified 1548
107 Ga0466972_0097345 3300044658 Bacteria 1393
108 Ga0466965_0035457 3300044683 Bacteria 2444
109 Ga0466965_0079068 3300044683 Bacteria 1661
110 Ga0466966_0007586 3300044684 Bacteria 7189
111 Ga0466966_0024859 3300044684 Bacteria 3917
112 Ga0466966_0053108 3300044684 Bacteria 2571
113 Ga0466966_0061839 3300044684 Bacteria 2361
114 Ga0466966_0074148 3300044684 Bacteria 2127
115 Ga0466966_0230191 3300044684 Bacteria 1118
116 Ga0466961_0007661 3300044693 Bacteria 6873
117 Ga0466961_0008566 3300044693 Bacteria 6517
118 Ga0466961_0043384 3300044693 Bacteria 2881
119 Ga0466961_0067211 3300044693 Bacteria 2277
120 Ga0466961_0319442 3300044693 Bacteria 947
121 Ga0466963_0005463 3300044694 Bacteria 7441
122 Ga0466963_0005846 3300044694 Bacteria 7245
123 Ga0466963_0011345 3300044694 Bacteria 5423
124 Ga0466963_0049667 3300044694 Bacteria 2775
125 Ga0466963_0057029 3300044694 Bacteria 2600
126 Ga0466963_0074967 3300044694 Bacteria 2283
127 Ga0466963_0079040 3300044694 Bacteria 2225
128 Ga0466963_0358145 3300044694 Bacteria 1028
129 Ga0466963_0395738 3300044694 Bacteria 974
130 Ga0466964_0015204 3300044706 Bacteria 2929
131 Ga0466971_0012078 3300044719 Bacteria 3784
132 Ga0466971_0020163 3300044719 Bacteria 2964
133 Ga0466971_0182720 3300044719 Bacteria 986
134 Ga0466968_0000398 3300044735 Bacteria 14331
135 Ga0466970_0006379 3300044765 Bacteria 5894
136 Ga0466970_0061157 3300044765 Bacteria 2017
137 Ga0466970_0113331 3300044765 Bacteria 1482
138 Ga0466970_0300316 3300044765 Bacteria 905
139 Ga0466957_0004436 3300044842 Bacteria 7814
140 Ga0466957_0005938 3300044842 Bacteria 6881
141 Ga0466957_0016979 3300044842 Bacteria 4259
142 Ga0466957_0080475 3300044842 Bacteria 2028
143 Ga0466960_0349028 3300044901 Unclassified 843
144 Ga0466959_0016700 3300045049 Bacteria 5369
145 Ga0466959_0063995 3300045049 Bacteria 2670
146 Ga0466959_0106877 3300045049 Bacteria 2000
147 Ga0466959_0123542 3300045049 Bacteria 1838
148 Ga0466959_0257290 3300045049 Bacteria 1202
149 Ga0466958_0005480 3300045836 Bacteria 6840
150 Ga0466958_0022270 3300045836 Bacteria 3709
151 Ga0466958_0160560 3300045836 Unclassified 1420
152 Ga0466958_0201631 3300045836 Bacteria 1266
153 Ga0466967_0014322 3300045976 Bacteria 6172
154 Ga0466967_0032854 3300045976 Bacteria 4387
155 Ga0466967_0048639 3300045976 Bacteria 3704
156 Ga0466967_0062811 3300045976 Bacteria 3298
157 Ga0466967_0069091 3300045976 Bacteria 3156
158 Ga0466967_0111456 3300045976 Bacteria 2514
159 Ga0466967_0151000 3300045976 Bacteria 2171
160 Ga0466967_0202533 3300045976 Bacteria 1880
161 Ga0466967_0211453 3300045976 Bacteria 1840
162 Ga0466967_0229105 3300045976 Bacteria 1768
163 Ga0466967_0245791 3300045976 Bacteria 1707
164 Ga0466967_0287482 3300045976 Bacteria 1579
165 Ga0466967_0400184 3300045976 Bacteria 1336
166 Ga0466967_0405859 3300045976 Bacteria 1326
167 Ga0466967_0615071 3300045976 Bacteria 1073
168 Ga0495621_0001505 3300046539 Bacteria 6045
169 Ga0495669_0002858 3300046684 Bacteria 7083
170 Ga0495669_0118385 3300046684 Bacteria 1240
171 Ga0495677_0001840 3300047445 Bacteria 8479
172 Ga0496110_0095828 3300048913 Unclassified 2658
173 Ga0496111_0310660 3300048914 Bacteria 1168
174 Ga0496112_0009112 3300048915 Bacteria 8919
175 Ga0466962_0002239 3300061719 Bacteria 9151
176 Ga0466962_0022886 3300061719 Bacteria 3003
177 Ga0466962_0090009 3300061719 Bacteria 1470
178 Ga0466962_0113941 3300061719 Bacteria 1302
179 Ga0466962_0121424 3300061719 Bacteria 1261

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005327 Ga0070658_10585514 Ga0070658_105855141 239
2 3300005331 Ga0070670_100669071 Ga0070670_1006690711 239
3 3300005333 Ga0070677_10000152 Ga0070677_1000015226 239
4 3300005335 Ga0070666_10206928 Ga0070666_102069281 239
5 3300005336 Ga0070680_100222906 Ga0070680_1002229062 239
6 3300005339 Ga0070660_100022053 Ga0070660_1000220535 239
7 3300005344 Ga0070661_100007552 Ga0070661_1000075527 239
8 3300005344 Ga0070661_100082946 Ga0070661_1000829461 239
9 3300005356 Ga0070674_100148941 Ga0070674_1001489412 239
10 3300005366 Ga0070659_100076529 Ga0070659_1000765294 239
11 3300005366 Ga0070659_100684458 Ga0070659_1006844581 239
12 3300005435 Ga0070714_100026052 Ga0070714_1000260521 239
13 3300005455 Ga0070663_100084023 Ga0070663_1000840232 239
14 3300005455 Ga0070663_100249163 Ga0070663_1002491631 239
15 3300005456 Ga0070678_100024102 Ga0070678_1000241023 239
16 3300005456 Ga0070678_100054705 Ga0070678_1000547052 239
17 3300005457 Ga0070662_100017722 Ga0070662_1000177222 239
18 3300005458 Ga0070681_10050349 Ga0070681_100503494 239
19 3300005458 Ga0070681_10387748 Ga0070681_103877482 239
20 3300005459 Ga0068867_100302360 Ga0068867_1003023602 239
21 3300005530 Ga0070679_100023319 Ga0070679_1000233196 239
22 3300005530 Ga0070679_100146656 Ga0070679_1001466563 239
23 3300005563 Ga0068855_100036317 Ga0068855_1000363177 239
24 3300005563 Ga0068855_100286327 Ga0068855_1002863272 239
25 3300005564 Ga0070664_100027490 Ga0070664_1000274903 239
26 3300005564 Ga0070664_100099971 Ga0070664_1000999713 239
27 3300005564 Ga0070664_100624011 Ga0070664_1006240111 239
28 3300005614 Ga0068856_100019325 Ga0068856_1000193254 239
29 3300005614 Ga0068856_100236272 Ga0068856_1002362722 239
30 3300005616 Ga0068852_100028330 Ga0068852_1000283303 239
31 3300005616 Ga0068852_100098523 Ga0068852_1000985233 239
32 3300005616 Ga0068852_100282889 Ga0068852_1002828892 239
33 3300006237 Ga0097621_100924474 Ga0097621_1009244741 239
34 3300013100 Ga0157373_10054741 Ga0157373_100547412 239
35 3300013100 Ga0157373_10078510 Ga0157373_100785103 239
36 3300013102 Ga0157371_10024953 Ga0157371_100249532 239
37 3300013104 Ga0157370_10087159 Ga0157370_100871593 239
38 3300013105 Ga0157369_10039638 Ga0157369_100396386 239
39 3300013105 Ga0157369_10293258 Ga0157369_102932582 239
40 3300013296 Ga0157374_10183119 Ga0157374_101831193 239
41 3300014497 Ga0182008_10157984 Ga0182008_101579841 239
42 3300017792 Ga0163161_10021249 Ga0163161_100212492 239
43 3300025893 Ga0207682_10001291 Ga0207682_100012918 239
44 3300025904 Ga0207647_10097577 Ga0207647_100975772 239
45 3300025909 Ga0207705_10004834 Ga0207705_1000483411 239
46 3300025912 Ga0207707_10028914 Ga0207707_100289146 239
47 3300025912 Ga0207707_10335965 Ga0207707_103359652 239
48 3300025917 Ga0207660_10311991 Ga0207660_103119912 239
49 3300025919 Ga0207657_10019338 Ga0207657_100193382 239
50 3300025920 Ga0207649_10021182 Ga0207649_100211822 239
51 3300025920 Ga0207649_10563216 Ga0207649_105632161 239
52 3300025921 Ga0207652_10024875 Ga0207652_100248755 239
53 3300025925 Ga0207650_10050268 Ga0207650_100502685 239
54 3300025932 Ga0207690_10023476 Ga0207690_100234763 239
55 3300025933 Ga0207706_10012371 Ga0207706_100123718 239
56 3300025933 Ga0207706_10024128 Ga0207706_100241289 239
57 3300025940 Ga0207691_10108485 Ga0207691_101084852 239
58 3300025940 Ga0207691_10276543 Ga0207691_102765432 239
59 3300025945 Ga0207679_10279216 Ga0207679_102792163 239
60 3300025945 Ga0207679_10304398 Ga0207679_103043982 239
61 3300025949 Ga0207667_10137788 Ga0207667_101377882 239
62 3300026078 Ga0207702_10026918 Ga0207702_100269186 239
63 3300026078 Ga0207702_10319494 Ga0207702_103194942 239
64 3300026116 Ga0207674_10003594 Ga0207674_100035944 239
65 3300026116 Ga0207674_10021644 Ga0207674_100216447 239
66 3300026121 Ga0207683_10026076 Ga0207683_100260762 239
67 3300026142 Ga0207698_10087981 Ga0207698_100879813 239
68 3300034816 Ga0373930_0019831 Ga0373930_0019831_283_1002 239
69 3300037312 Ga0395899_0013321 Ga0395899_0013321_4745_5464 239
70 3300037312 Ga0395899_0017739 Ga0395899_0017739_995_1714 239
71 3300037312 Ga0395899_0369970 Ga0395899_0369970_204_923 239
72 3300037418 Ga0395900_0004173 Ga0395900_0004173_4908_5627 239
73 3300037418 Ga0395900_0009298 Ga0395900_0009298_2469_3188 239
74 3300037418 Ga0395900_0059270 Ga0395900_0059270_2410_3129 239
75 3300037418 Ga0395900_0070914 Ga0395900_0070914_920_1639 239
76 3300037418 Ga0395900_0096614 Ga0395900_0096614_1358_2077 239
77 3300037418 Ga0395900_0306910 Ga0395900_0306910_239_958 239
78 3300037418 Ga0395900_0365132 Ga0395900_0365132_340_1059 239
79 3300037418 Ga0395900_0536267 Ga0395900_0536267_81_800 239
80 3300037466 Ga0395898_0081572 Ga0395898_0081572_505_1224 239
81 3300037471 Ga0395905_0005073 Ga0395905_0005073_5167_5886 239
82 3300037471 Ga0395905_0091824 Ga0395905_0091824_2108_2827 239
83 3300037471 Ga0395905_0169890 Ga0395905_0169890_546_1265 239
84 3300037471 Ga0395905_0171079 Ga0395905_0171079_909_1628 239
85 3300037471 Ga0395905_0801286 Ga0395905_0801286_104_823 239
86 3300038443 Ga0395901_0076668 Ga0395901_0076668_2666_3385 239
87 3300038443 Ga0395901_0088217 Ga0395901_0088217_390_1109 239
88 3300038443 Ga0395901_0345430 Ga0395901_0345430_156_875 239
89 3300038443 Ga0395901_0346787 Ga0395901_0346787_79_798 239
90 3300038443 Ga0395901_0544157 Ga0395901_0544157_333_1052 239
91 3300044656 Ga0466969_0081122 Ga0466969_0081122_284_1003 239
92 3300044658 Ga0466972_0097345 Ga0466972_0097345_664_1383 239
93 3300044683 Ga0466965_0035457 Ga0466965_0035457_135_854 239
94 3300044683 Ga0466965_0079068 Ga0466965_0079068_834_1553 239
95 3300044684 Ga0466966_0007586 Ga0466966_0007586_5826_6545 239
96 3300044684 Ga0466966_0053108 Ga0466966_0053108_1022_1741 239
97 3300044684 Ga0466966_0061839 Ga0466966_0061839_709_1428 239
98 3300044684 Ga0466966_0074148 Ga0466966_0074148_560_1279 239
99 3300044684 Ga0466966_0230191 Ga0466966_0230191_376_1095 239
100 3300044693 Ga0466961_0007661 Ga0466961_0007661_922_1641 239
101 3300044693 Ga0466961_0008566 Ga0466961_0008566_5122_5841 239
102 3300044693 Ga0466961_0067211 Ga0466961_0067211_1369_2088 239
103 3300044693 Ga0466961_0319442 Ga0466961_0319442_112_831 239
104 3300044694 Ga0466963_0005463 Ga0466963_0005463_4019_4741 239
105 3300044694 Ga0466963_0011345 Ga0466963_0011345_3416_4135 239
106 3300044694 Ga0466963_0049667 Ga0466963_0049667_1590_2309 239
107 3300044694 Ga0466963_0057029 Ga0466963_0057029_1572_2291 239
108 3300044694 Ga0466963_0074967 Ga0466963_0074967_919_1638 239
109 3300044694 Ga0466963_0395738 Ga0466963_0395738_139_858 239
110 3300044706 Ga0466964_0015204 Ga0466964_0015204_409_1128 239
111 3300044719 Ga0466971_0012078 Ga0466971_0012078_434_1153 239
112 3300044719 Ga0466971_0020163 Ga0466971_0020163_1510_2229 239
113 3300044735 Ga0466968_0000398 Ga0466968_0000398_6114_6833 239
114 3300044765 Ga0466970_0006379 Ga0466970_0006379_1679_2398 239
115 3300044765 Ga0466970_0061157 Ga0466970_0061157_368_1087 239
116 3300044765 Ga0466970_0113331 Ga0466970_0113331_664_1383 239
117 3300044765 Ga0466970_0300316 Ga0466970_0300316_79_798 239
118 3300044842 Ga0466957_0004436 Ga0466957_0004436_2566_3288 239
119 3300044842 Ga0466957_0005938 Ga0466957_0005938_4297_5016 239
120 3300044842 Ga0466957_0080475 Ga0466957_0080475_738_1457 239
121 3300044901 Ga0466960_0349028 Ga0466960_0349028_52_771 239
122 3300045049 Ga0466959_0063995 Ga0466959_0063995_711_1430 239
123 3300045049 Ga0466959_0106877 Ga0466959_0106877_173_892 239
124 3300045049 Ga0466959_0123542 Ga0466959_0123542_1071_1790 239
125 3300045049 Ga0466959_0257290 Ga0466959_0257290_87_806 239
126 3300045836 Ga0466958_0005480 Ga0466958_0005480_3797_4519 239
127 3300045836 Ga0466958_0022270 Ga0466958_0022270_2314_3033 239
128 3300045836 Ga0466958_0160560 Ga0466958_0160560_556_1275 239
129 3300045836 Ga0466958_0201631 Ga0466958_0201631_52_771 239
130 3300045976 Ga0466967_0014322 Ga0466967_0014322_4182_4904 239
131 3300045976 Ga0466967_0032854 Ga0466967_0032854_3119_3838 239
132 3300045976 Ga0466967_0048639 Ga0466967_0048639_518_1237 239
133 3300045976 Ga0466967_0062811 Ga0466967_0062811_2123_2842 239
134 3300045976 Ga0466967_0069091 Ga0466967_0069091_1125_1844 239
135 3300045976 Ga0466967_0111456 Ga0466967_0111456_1160_1879 239
136 3300045976 Ga0466967_0151000 Ga0466967_0151000_819_1538 239
137 3300045976 Ga0466967_0202533 Ga0466967_0202533_997_1716 239
138 3300045976 Ga0466967_0211453 Ga0466967_0211453_955_1674 239
139 3300045976 Ga0466967_0245791 Ga0466967_0245791_228_947 239
140 3300045976 Ga0466967_0287482 Ga0466967_0287482_563_1282 239
141 3300045976 Ga0466967_0405859 Ga0466967_0405859_82_801 239
142 3300045976 Ga0466967_0615071 Ga0466967_0615071_121_840 239
143 3300046539 Ga0495621_0001505 Ga0495621_0001505_4663_5382 239
144 3300046684 Ga0495669_0002858 Ga0495669_0002858_1129_1848 239
145 3300046684 Ga0495669_0118385 Ga0495669_0118385_201_920 239
146 3300047445 Ga0495677_0001840 Ga0495677_0001840_7447_8166 239
147 3300048913 Ga0496110_0095828 Ga0496110_0095828_387_1106 239
148 3300048914 Ga0496111_0310660 Ga0496111_0310660_84_803 239
149 3300048915 Ga0496112_0009112 Ga0496112_0009112_4582_5301 239
150 3300061719 Ga0466962_0002239 Ga0466962_0002239_6230_6949 239
151 3300061719 Ga0466962_0022886 Ga0466962_0022886_818_1540 239
152 3300061719 Ga0466962_0090009 Ga0466962_0090009_571_1290 239
153 3300061719 Ga0466962_0113941 Ga0466962_0113941_322_1041 239
154 3300061719 Ga0466962_0121424 Ga0466962_0121424_484_1203 239
155 3300005331 Ga0070670_100087034 Ga0070670_1000870345 240
156 3300005457 Ga0070662_100103528 Ga0070662_1001035282 240
157 3300025933 Ga0207706_10150918 Ga0207706_101509182 240
158 3300003323 rootH1_10096314 rootH1_100963142 242
159 3300005563 Ga0068855_100052930 Ga0068855_1000529305 242
160 3300013104 Ga0157370_10001896 Ga0157370_1000189615 242
161 3300025949 Ga0207667_10044122 Ga0207667_100441225 242
162 3300031852 Ga0307410_10125068 Ga0307410_101250681 242
163 3300031995 Ga0307409_100399886 Ga0307409_1003998862 242
164 3300037312 Ga0395899_0125765 Ga0395899_0125765_912_1640 242
165 3300037418 Ga0395900_0049209 Ga0395900_0049209_2513_3241 242
166 3300037418 Ga0395900_0578998 Ga0395900_0578998_260_988 242
167 3300037466 Ga0395898_0130258 Ga0395898_0130258_222_950 242
168 3300038443 Ga0395901_0462248 Ga0395901_0462248_546_1274 242
169 3300044684 Ga0466966_0024859 Ga0466966_0024859_1695_2423 242
170 3300044693 Ga0466961_0043384 Ga0466961_0043384_1642_2370 242
171 3300044694 Ga0466963_0005846 Ga0466963_0005846_3062_3790 242
172 3300044694 Ga0466963_0079040 Ga0466963_0079040_590_1351 242
173 3300044694 Ga0466963_0358145 Ga0466963_0358145_85_813 242
174 3300044719 Ga0466971_0182720 Ga0466971_0182720_213_974 242
175 3300044842 Ga0466957_0016979 Ga0466957_0016979_1862_2623 242
176 3300045049 Ga0466959_0016700 Ga0466959_0016700_2722_3450 242
177 3300045976 Ga0466967_0229105 Ga0466967_0229105_806_1567 242
178 3300045976 Ga0466967_0400184 Ga0466967_0400184_174_902 242

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00027

cNMP_binding

Cyclic nucleotide-binding domain

30

117

0.96

PF13545

HTH_Crp_2

Crp-like helix-turn-helix domain

149

222

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
5cvr-assembly1.cif.gz_A-2 crystal structure of fnr of a. fischeri in a partially degraded form 0.9333 30 228
8qto-assembly1.cif.gz_A-2 crystal structure of holo-l28h-fnr of a. fischeri 0.9104 24 228
5e44-assembly1.cif.gz_A-2 crystal structure of holo-fnr of a. fischeri 0.9083 8 229
4i2o-assembly1.cif.gz_B the structure of fixk2 from bradyrhizobium japonicum 0.9023 29 227
3i54-assembly2.cif.gz_C crystal structure of mtbcrp in complex with camp 0.8985 32 228
ID Description Score Start End Superfamily
5e44A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9294 149 229 1.10.10.10
4byyB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9158 180 218 1.10.10.10
5cvrA01 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.889 30 148 2.60.120.10
4i2oB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8829 149 227 1.10.10.10
5e44A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.878 149 229 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A653J5C4-F1-model_v4 Crp/Fnr family transcriptional regulator 0.9779 2 242 GO:0003677
GO:0006355
AF-A0A4Q5QDY6-F1-model_v4 Crp/Fnr family transcriptional regulator 0.9745 32 236 GO:0003677
GO:0006355
AF-A0A430FXQ2-F1-model_v4 HTH crp-type domain-containing protein 0.9729 150 232 GO:0003677
GO:0006355
AF-A0A7X3IB60-F1-model_v4 Crp/Fnr family transcriptional regulator 0.9719 3 236 GO:0003677
GO:0006355
AF-X6HF14-F1-model_v4 Crp/Fnr family transcription regulator 0.9711 5 236 GO:0003677
GO:0006355

Feature Viewer

pLDDT pTM Quality
91.22 0.89 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map