F271903
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 178 | 152 | 162 | 305 |
Family's Representative Sequence
| Representative Sequence | 3300009094|Ga0111539_10021486|Ga0111539_100214865 |
| Length | 334 |
| Sequence | VTDPAARIAPERSNPAALDGVFSSHSIGTTKEMGMSTTRLRGIWLPLVTPFREGVLDETSVERMVRHYLAEPIDGLVLAATTGEGLTLDDDEVNRLVQITAAECDRRIPLYLGLSGSDTRRLLKALDRAARWPVDGYLIACPYYTRPSQDGLFRHFSTLAGHTERPILVYNIPYRTGVNMTNETMLRLAQIPNIVGVKECCADQTQSFDLLRARPADFSVLTGEDTLFYAALTQGADGGILAAAHAETAKFAEIRRLVLAGDGRGLDVWRTLVDLPRLLFAEPNPAPIKHWLWRAGLIDSPEVRLPMTGVSAGLAARLDAERVRRDRGSIVRPA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2511231027 | Phyllobacterium sp. YR531 | Isolate | Rhizosphere |
| 2 | 2599185352 | Sinorhizobium sp. NFACC03 | Isolate | Rhizoplane |
| 3 | 2643221557 | Ensifer sp. Root558 | Isolate | Unclassified |
| 4 | 2643221580 | Devosia sp. Root635 | Isolate | Unclassified |
| 5 | 2643221610 | Ensifer sp. Root74 | Isolate | Unclassified |
| 6 | 2643221668 | Ensifer sp. Root423 | Isolate | Unclassified |
| 7 | 2643221674 | Devosia sp. Root436 | Isolate | Unclassified |
| 8 | 2643221675 | Ensifer sp. Root1298 | Isolate | Unclassified |
| 9 | 2643221680 | Ensifer sp. Root1312 | Isolate | Unclassified |
| 10 | 2643221723 | Ensifer sp. Root278 | Isolate | Unclassified |
| 11 | 2643221726 | Ensifer sp. Root954 | Isolate | Unclassified |
| 12 | 2821443989 | Inquilinus ginsengisoli 584 | Isolate | Unclassified |
| 13 | 2842871566 | Phyllobacterium sp. R-73111 | Isolate | Unclassified |
| 14 | 2844533157 | Inquilinus sp. R-72501 v. 2 | Isolate | Unclassified |
| 15 | 2883577096 | Roseococcus sp. SYP-B2431 | Isolate | Rhizosphere |
| 16 | 2894772417 | Roseomonas oryzicola KCTC 22478 | Isolate | Rhizosphere |
| 17 | 3300002987 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB | Metagenome | Endosphere |
| 18 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 19 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 20 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 21 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 27 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 28 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 29 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 30 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 31 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 32 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 33 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 34 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 35 | 3300006042 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 | Metagenome | Endosphere |
| 36 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 37 | 3300006186 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 | Metagenome | Endosphere |
| 38 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 39 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 40 | 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Metagenome | Rhizosphere |
| 41 | 3300007788 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 | Metagenome | Rhizosphere |
| 42 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 47 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 48 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300013249 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 | Metagenome | Rhizosphere |
| 50 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 52 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 53 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 72 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 73 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 74 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 75 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 76 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 77 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 78 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 79 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 80 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 81 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 82 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 83 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 84 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 85 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 86 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 87 | 3300035111 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 88 | 3300035117 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 | Metagenome | Rhizosphere |
| 89 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 90 | 3300035119 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 | Metagenome | Rhizosphere |
| 91 | 3300035120 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 | Metagenome | Rhizosphere |
| 92 | 3300035172 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 | Metagenome | Rhizosphere |
| 93 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 94 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 95 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 96 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 97 | 3300041408 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 | Metagenome | Rhizosphere |
| 98 | 3300042003 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 | Metagenome | Rhizosphere |
| 99 | 3300042436 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 | Metagenome | Rhizosphere |
| 100 | 3300042461 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 | Metagenome | Rhizosphere |
| 101 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300046463 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300046511 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300046514 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300046533 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere | Metagenome | Rhizosphere |
| 114 | 3300046642 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046680 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300047444 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300047471 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300047673 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 129 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 130 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 131 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 132 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 133 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 134 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 135 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 136 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 137 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 138 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 139 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 140 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 141 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 142 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 143 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 144 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 145 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 146 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 147 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 148 | 3300050516 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation | Metagenome | Endosphere |
| 149 | 3300053078 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere | Metagenome | Rhizosphere |
| 150 | 3300053084 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere | Metagenome | Rhizosphere |
| 151 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 152 | 3300053150 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere | Metagenome | Endosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 91.01 |
| Metatranscriptomes | 0 |
| Isolates | 8.99 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 6.74 |
| Nodule | 0 |
| Rhizoplane | 1.69 |
| Rhizosphere | 81.46 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 10.11 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25159J45721_1000028 | 3300002987 | Bacteria | 111628 |
| 2 | JGI25406J46586_10000198 | 3300003203 | Bacteria | 26635 |
| 3 | Ga0055526_1000726 | 3300003771 | Bacteria | 24905 |
| 4 | Ga0055524_1000676 | 3300003775 | Bacteria | 23909 |
| 5 | Ga0070660_100107716 | 3300005339 | Bacteria | 2214 |
| 6 | Ga0070669_100270917 | 3300005353 | Bacteria | 1357 |
| 7 | Ga0070669_100334013 | 3300005353 | Bacteria | 1227 |
| 8 | Ga0070675_100406353 | 3300005354 | Bacteria | 1216 |
| 9 | Ga0070674_100217142 | 3300005356 | Bacteria | 1486 |
| 10 | Ga0070714_100648138 | 3300005435 | Bacteria | 1016 |
| 11 | Ga0070681_10010832 | 3300005458 | Bacteria | 9010 |
| 12 | Ga0070679_100026667 | 3300005530 | Bacteria | 5681 |
| 13 | Ga0068853_100011982 | 3300005539 | Bacteria | 7052 |
| 14 | Ga0068855_100029441 | 3300005563 | Bacteria | 6564 |
| 15 | Ga0068852_100052835 | 3300005616 | Bacteria | 3495 |
| 16 | Ga0068862_100228000 | 3300005844 | Bacteria | 1689 |
| 17 | Ga0081455_10001482 | 3300005937 | Bacteria | 29031 |
| 18 | Ga0081539_10000425 | 3300005985 | Bacteria | 89942 |
| 19 | Ga0081539_10020660 | 3300005985 | Bacteria | 4437 |
| 20 | Ga0075365_10003192 | 3300006038 | Bacteria | 8372 |
| 21 | Ga0075368_10018489 | 3300006042 | Bacteria | 2620 |
| 22 | Ga0075364_10002133 | 3300006051 | Bacteria | 11070 |
| 23 | Ga0075369_10077158 | 3300006186 | Bacteria | 1473 |
| 24 | Ga0075428_100124939 | 3300006844 | Bacteria | 2800 |
| 25 | Ga0075429_100011516 | 3300006880 | Bacteria | 7669 |
| 26 | Ga0099794_10028484 | 3300007265 | Bacteria | 2599 |
| 27 | Ga0099795_10012186 | 3300007788 | Bacteria | 2598 |
| 28 | Ga0105240_10078533 | 3300009093 | Bacteria | 4064 |
| 29 | Ga0111539_10021486 | 3300009094 | Bacteria | 7942 |
| 30 | Ga0111539_10101230 | 3300009094 | Bacteria | 3383 |
| 31 | Ga0105243_10496900 | 3300009148 | Bacteria | 1155 |
| 32 | Ga0105237_10010881 | 3300009545 | Bacteria | 9654 |
| 33 | Ga0105237_10595465 | 3300009545 | Bacteria | 1113 |
| 34 | Ga0105238_10006102 | 3300009551 | Bacteria | 11952 |
| 35 | Ga0105238_10029393 | 3300009551 | Bacteria | 5599 |
| 36 | Ga0105249_10272812 | 3300009553 | Bacteria | 1686 |
| 37 | Ga0157370_10009539 | 3300013104 | Bacteria | 10353 |
| 38 | Ga0157370_10131366 | 3300013104 | Bacteria | 2336 |
| 39 | Ga0171463_1003 | 3300013249 | Bacteria | 695693 |
| 40 | Ga0157380_10484487 | 3300014326 | Bacteria | 1197 |
| 41 | Ga0213875_10000046 | 3300021388 | Bacteria | 149850 |
| 42 | Ga0209256_1000042 | 3300025299 | Bacteria | 341821 |
| 43 | Ga0207707_10002483 | 3300025912 | Bacteria | 16597 |
| 44 | Ga0207707_10009652 | 3300025912 | Bacteria | 8371 |
| 45 | Ga0207695_10181814 | 3300025913 | Bacteria | 2024 |
| 46 | Ga0207671_10072172 | 3300025914 | Bacteria | 2576 |
| 47 | Ga0207660_10015693 | 3300025917 | Bacteria | 5002 |
| 48 | Ga0207660_10016197 | 3300025917 | Bacteria | 4932 |
| 49 | Ga0207657_10007404 | 3300025919 | Bacteria | 11253 |
| 50 | Ga0207649_10075893 | 3300025920 | Bacteria | 2161 |
| 51 | Ga0207652_10007209 | 3300025921 | Bacteria | 8969 |
| 52 | Ga0207681_10031493 | 3300025923 | Bacteria | 3465 |
| 53 | Ga0207694_10133905 | 3300025924 | Bacteria | 1988 |
| 54 | Ga0207664_10509118 | 3300025929 | Bacteria | 1078 |
| 55 | Ga0207706_10025288 | 3300025933 | Bacteria | 5321 |
| 56 | Ga0207669_10099139 | 3300025937 | Bacteria | 1921 |
| 57 | Ga0207667_10023182 | 3300025949 | Bacteria | 6836 |
| 58 | Ga0207668_10428717 | 3300025972 | Bacteria | 1124 |
| 59 | Ga0207677_10136858 | 3300026023 | Bacteria | 1869 |
| 60 | Ga0207639_10039419 | 3300026041 | Bacteria | 3520 |
| 61 | Ga0207639_10183622 | 3300026041 | Bacteria | 1781 |
| 62 | Ga0207708_10082182 | 3300026075 | Bacteria | 2476 |
| 63 | Ga0207674_10051539 | 3300026116 | Bacteria | 4200 |
| 64 | Ga0207428_10015917 | 3300027907 | Bacteria | 6486 |
| 65 | Ga0265334_10034550 | 3300028573 | Bacteria | 2006 |
| 66 | Ga0265318_10020688 | 3300028577 | Bacteria | 2652 |
| 67 | Ga0265338_10253355 | 3300028800 | Bacteria | 1298 |
| 68 | Ga0265330_10032468 | 3300031235 | Bacteria | 2339 |
| 69 | Ga0265332_10030380 | 3300031238 | Bacteria | 2360 |
| 70 | Ga0265325_10025496 | 3300031241 | Bacteria | 3210 |
| 71 | Ga0265329_10023734 | 3300031242 | Bacteria | 2040 |
| 72 | Ga0265340_10005045 | 3300031247 | Bacteria | 7345 |
| 73 | Ga0265340_10009051 | 3300031247 | Bacteria | 5358 |
| 74 | Ga0265339_10056610 | 3300031249 | Bacteria | 2123 |
| 75 | Ga0265339_10154542 | 3300031249 | Bacteria | 1158 |
| 76 | Ga0265331_10041816 | 3300031250 | Bacteria | 2225 |
| 77 | Ga0265327_10000180 | 3300031251 | Bacteria | 134665 |
| 78 | Ga0265327_10068032 | 3300031251 | Bacteria | 1792 |
| 79 | Ga0307408_100053697 | 3300031548 | Bacteria | 2911 |
| 80 | Ga0265313_10021861 | 3300031595 | Bacteria | 3487 |
| 81 | Ga0265313_10111410 | 3300031595 | Bacteria | 1203 |
| 82 | Ga0265314_10017130 | 3300031711 | Bacteria | 5696 |
| 83 | Ga0265342_10006418 | 3300031712 | Bacteria | 8762 |
| 84 | Ga0265342_10087430 | 3300031712 | Bacteria | 1791 |
| 85 | Ga0373923_0005517 | 3300035111 | Bacteria | 4299 |
| 86 | Ga0373953_0009663 | 3300035117 | Bacteria | 3328 |
| 87 | Ga0373954_0001097 | 3300035118 | Bacteria | 10808 |
| 88 | Ga0373954_0148652 | 3300035118 | Bacteria | 1144 |
| 89 | Ga0373956_0013751 | 3300035119 | Bacteria | 3370 |
| 90 | Ga0373957_0000767 | 3300035120 | Bacteria | 8332 |
| 91 | Ga0373955_0000654 | 3300035172 | Bacteria | 14784 |
| 92 | Ga0373933_0122225 | 3300035724 | Bacteria | 1631 |
| 93 | Ga0373937_0020994 | 3300036401 | Bacteria | 5857 |
| 94 | Ga0373937_0082869 | 3300036401 | Bacteria | 2967 |
| 95 | Ga0373937_0563899 | 3300036401 | Bacteria | 1082 |
| 96 | Ga0436364_0402761 | 3300037853 | Bacteria | 14147 |
| 97 | Ga0436364_0544972 | 3300037853 | Bacteria | 2060 |
| 98 | Ga0436365_0609136 | 3300039437 | Bacteria | 1591 |
| 99 | Ga0439453_0000069 | 3300041408 | Bacteria | 7537 |
| 100 | Ga0439443_004607 | 3300042003 | Bacteria | 1806 |
| 101 | Ga0439435_0009662 | 3300042436 | Bacteria | 2268 |
| 102 | Ga0439460_0023588 | 3300042461 | Bacteria | 1698 |
| 103 | Ga0495603_0040456 | 3300046455 | Bacteria | 2790 |
| 104 | Ga0495629_0002829 | 3300046459 | Bacteria | 13259 |
| 105 | Ga0495651_0014626 | 3300046462 | Bacteria | 6067 |
| 106 | Ga0495653_0006515 | 3300046463 | Bacteria | 9581 |
| 107 | Ga0495664_0042336 | 3300046477 | Bacteria | 2697 |
| 108 | Ga0495606_0002692 | 3300046507 | Bacteria | 20068 |
| 109 | Ga0495608_0051724 | 3300046511 | Bacteria | 2721 |
| 110 | Ga0495610_0025070 | 3300046512 | Bacteria | 3208 |
| 111 | Ga0495618_0217175 | 3300046514 | Bacteria | 1207 |
| 112 | Ga0495628_0017390 | 3300046516 | Bacteria | 5988 |
| 113 | Ga0495666_0098425 | 3300046526 | Bacteria | 1379 |
| 114 | Ga0495652_0240431 | 3300046529 | Bacteria | 1347 |
| 115 | Ga0495640_0040771 | 3300046533 | Bacteria | 3249 |
| 116 | Ga0495640_0192872 | 3300046533 | Bacteria | 1294 |
| 117 | Ga0495634_0010906 | 3300046642 | Bacteria | 6635 |
| 118 | Ga0495635_0007986 | 3300046663 | Bacteria | 7397 |
| 119 | Ga0495657_0016227 | 3300046675 | Bacteria | 5429 |
| 120 | Ga0495599_0150643 | 3300046678 | Bacteria | 1441 |
| 121 | Ga0495623_0014466 | 3300046679 | Bacteria | 5106 |
| 122 | Ga0495646_0002355 | 3300046680 | Bacteria | 11571 |
| 123 | Ga0495600_0005919 | 3300046809 | Bacteria | 7398 |
| 124 | Ga0495581_0249593 | 3300047315 | Bacteria | 1038 |
| 125 | Ga0495674_0069332 | 3300047319 | Bacteria | 3049 |
| 126 | Ga0495672_0147306 | 3300047320 | Bacteria | 1224 |
| 127 | Ga0495675_0021807 | 3300047444 | Bacteria | 4080 |
| 128 | Ga0495684_0002455 | 3300047471 | Bacteria | 14793 |
| 129 | Ga0495684_0197364 | 3300047471 | Bacteria | 1485 |
| 130 | Ga0495593_0003882 | 3300047673 | Bacteria | 8933 |
| 131 | Ga0495602_0046581 | 3300048088 | Bacteria | 3915 |
| 132 | Ga0496112_0000022 | 3300048915 | Bacteria | 156255 |
| 133 | Ga0496115_0096748 | 3300048918 | Bacteria | 2417 |
| 134 | Ga0496118_0244364 | 3300048921 | Bacteria | 1025 |
| 135 | Ga0496121_0149250 | 3300048924 | Bacteria | 1723 |
| 136 | Ga0501032_0088289 | 3300049569 | Bacteria | 2058 |
| 137 | Ga0501033_0015624 | 3300049570 | Bacteria | 5757 |
| 138 | Ga0501033_0165101 | 3300049570 | Bacteria | 1592 |
| 139 | Ga0501034_0000640 | 3300049571 | Bacteria | 54307 |
| 140 | Ga0501034_0340342 | 3300049571 | Bacteria | 1430 |
| 141 | Ga0501036_0145201 | 3300049572 | Bacteria | 2001 |
| 142 | Ga0501046_0102128 | 3300049580 | Bacteria | 2199 |
| 143 | Ga0501047_0086047 | 3300049581 | Bacteria | 3020 |
| 144 | Ga0501047_0256233 | 3300049581 | Bacteria | 1598 |
| 145 | Ga0501070_0311956 | 3300049586 | Bacteria | 1280 |
| 146 | Ga0501072_0110333 | 3300049588 | Bacteria | 2190 |
| 147 | Ga0501074_0093960 | 3300049590 | Bacteria | 2148 |
| 148 | Ga0501080_0320763 | 3300049742 | Bacteria | 1403 |
| 149 | Ga0501083_0027866 | 3300049744 | Bacteria | 3896 |
| 150 | Ga0501083_0150819 | 3300049744 | Bacteria | 1522 |
| 151 | Ga0501044_0094144 | 3300049823 | Bacteria | 3021 |
| 152 | Ga0501044_0463683 | 3300049823 | Bacteria | 1172 |
| 153 | nmdc:mga00v17_7396_c1 | 3300050491 | Bacteria | 5858 |
| 154 | nmdc:mga0yw44_6755_c1 | 3300050492 | Bacteria | 5573 |
| 155 | nmdc:mga09592_27636_c1 | 3300050508 | Bacteria | 4709 |
| 156 | nmdc:mga08y16_16597_c1 | 3300050511 | Bacteria | 7745 |
| 157 | nmdc:mga08y16_48860_c1 | 3300050511 | Bacteria | 4427 |
| 158 | nmdc:mga0sz30_140731_c1 | 3300050516 | Bacteria | 1065 |
| 159 | Ga0495612_0082041 | 3300053078 | Bacteria | 1356 |
| 160 | Ga0495595_0021405 | 3300053084 | Bacteria | 2825 |
| 161 | Ga0495619_0001733 | 3300053085 | Bacteria | 14473 |
| 162 | Ga0500603_011162 | 3300053150 | Bacteria | 2038 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300039437 | Ga0436365_0609136 | Ga0436365_0609136_19_822 | 262 |
| 2 | 3300048918 | Ga0496115_0096748 | Ga0496115_0096748_932_1843 | 272 |
| 3 | 3300009545 | Ga0105237_10595465 | Ga0105237_105954652 | 275 |
| 4 | 3300031595 | Ga0265313_10111410 | Ga0265313_101114101 | 278 |
| 5 | 3300047320 | Ga0495672_0147306 | Ga0495672_0147306_18_887 | 289 |
| 6 | iso_pu_bacteria | 2821443989 | 2821445216 | 290 |
| 7 | iso_pu_bacteria | 2844533157 | 2844540179 | 290 |
| 8 | 3300049742 | Ga0501080_0320763 | Ga0501080_0320763_464_1345 | 291 |
| 9 | iso_pu_bacteria | 2643221674 | 2644413637 | 291 |
| 10 | 3300005356 | Ga0070674_100217142 | Ga0070674_1002171422 | 292 |
| 11 | 3300025933 | Ga0207706_10025288 | Ga0207706_100252885 | 292 |
| 12 | 3300025937 | Ga0207669_10099139 | Ga0207669_100991392 | 292 |
| 13 | 3300047315 | Ga0495581_0249593 | Ga0495581_0249593_129_1007 | 292 |
| 14 | 3300005353 | Ga0070669_100270917 | Ga0070669_1002709172 | 293 |
| 15 | 3300005354 | Ga0070675_100406353 | Ga0070675_1004063532 | 293 |
| 16 | 3300005844 | Ga0068862_100228000 | Ga0068862_1002280003 | 293 |
| 17 | 3300009094 | Ga0111539_10101230 | Ga0111539_101012302 | 293 |
| 18 | 3300025923 | Ga0207681_10031493 | Ga0207681_100314934 | 293 |
| 19 | 3300026075 | Ga0207708_10082182 | Ga0207708_100821822 | 293 |
| 20 | 3300041408 | Ga0439453_0000069 | Ga0439453_0000069_5722_6606 | 293 |
| 21 | 3300042003 | Ga0439443_004607 | Ga0439443_004607_807_1691 | 293 |
| 22 | 3300042436 | Ga0439435_0009662 | Ga0439435_0009662_859_1743 | 293 |
| 23 | 3300042461 | Ga0439460_0023588 | Ga0439460_0023588_490_1374 | 293 |
| 24 | 3300046512 | Ga0495610_0025070 | Ga0495610_0025070_422_1306 | 293 |
| 25 | 3300050511 | nmdc:mga08y16_48860_c1 | nmdc:mga08y16_48860_c1_1255_2181 | 293 |
| 26 | 3300005937 | Ga0081455_10001482 | Ga0081455_1000148228 | 294 |
| 27 | 3300026116 | Ga0207674_10051539 | Ga0207674_100515395 | 294 |
| 28 | 3300049744 | Ga0501083_0150819 | Ga0501083_0150819_304_1191 | 294 |
| 29 | 3300005985 | Ga0081539_10020660 | Ga0081539_100206603 | 295 |
| 30 | 3300006844 | Ga0075428_100124939 | Ga0075428_1001249394 | 295 |
| 31 | 3300006880 | Ga0075429_100011516 | Ga0075429_1000115164 | 295 |
| 32 | 3300009094 | Ga0111539_10021486 | Ga0111539_100214865 | 295 |
| 33 | 3300027907 | Ga0207428_10015917 | Ga0207428_100159174 | 295 |
| 34 | 3300028577 | Ga0265318_10020688 | Ga0265318_100206883 | 295 |
| 35 | 3300031235 | Ga0265330_10032468 | Ga0265330_100324682 | 295 |
| 36 | 3300031242 | Ga0265329_10023734 | Ga0265329_100237343 | 295 |
| 37 | 3300031247 | Ga0265340_10005045 | Ga0265340_100050453 | 295 |
| 38 | 3300031247 | Ga0265340_10009051 | Ga0265340_100090514 | 295 |
| 39 | 3300031250 | Ga0265331_10041816 | Ga0265331_100418161 | 295 |
| 40 | 3300031595 | Ga0265313_10021861 | Ga0265313_100218614 | 295 |
| 41 | 3300031711 | Ga0265314_10017130 | Ga0265314_100171306 | 295 |
| 42 | 3300031712 | Ga0265342_10006418 | Ga0265342_100064187 | 295 |
| 43 | 3300050508 | nmdc:mga09592_27636_c1 | nmdc:mga09592_27636_c1_2521_3423 | 295 |
| 44 | 3300050511 | nmdc:mga08y16_16597_c1 | nmdc:mga08y16_16597_c1_3042_3944 | 295 |
| 45 | iso_pu_bacteria | 2894772417 | 2894773214 | 295 |
| 46 | 3300007265 | Ga0099794_10028484 | Ga0099794_100284842 | 296 |
| 47 | 3300031251 | Ga0265327_10000180 | Ga0265327_1000018031 | 296 |
| 48 | 3300049571 | Ga0501034_0340342 | Ga0501034_0340342_514_1404 | 296 |
| 49 | 3300005435 | Ga0070714_100648138 | Ga0070714_1006481381 | 297 |
| 50 | 3300007788 | Ga0099795_10012186 | Ga0099795_100121863 | 297 |
| 51 | 3300021388 | Ga0213875_10000046 | Ga0213875_1000004679 | 297 |
| 52 | 3300025929 | Ga0207664_10509118 | Ga0207664_105091181 | 297 |
| 53 | 3300028800 | Ga0265338_10253355 | Ga0265338_102533551 | 297 |
| 54 | 3300035118 | Ga0373954_0148652 | Ga0373954_0148652_138_1037 | 297 |
| 55 | 3300035724 | Ga0373933_0122225 | Ga0373933_0122225_334_1233 | 297 |
| 56 | 3300036401 | Ga0373937_0082869 | Ga0373937_0082869_424_1323 | 297 |
| 57 | 3300037853 | Ga0436364_0402761 | Ga0436364_0402761_5789_6730 | 297 |
| 58 | 3300037853 | Ga0436364_0544972 | Ga0436364_0544972_33_944 | 297 |
| 59 | 3300046477 | Ga0495664_0042336 | Ga0495664_0042336_127_1026 | 297 |
| 60 | 3300046533 | Ga0495640_0192872 | Ga0495640_0192872_170_1069 | 297 |
| 61 | 3300046678 | Ga0495599_0150643 | Ga0495599_0150643_359_1258 | 297 |
| 62 | 3300047471 | Ga0495684_0197364 | Ga0495684_0197364_397_1296 | 297 |
| 63 | 3300049571 | Ga0501034_0000640 | Ga0501034_0000640_3742_4635 | 297 |
| 64 | 3300049823 | Ga0501044_0094144 | Ga0501044_0094144_291_1187 | 297 |
| 65 | iso_pu_bacteria | 2511231027 | 2511391750 | 297 |
| 66 | iso_pu_bacteria | 2599185352 | 2600195821 | 297 |
| 67 | iso_pu_bacteria | 2643221580 | 2643909679 | 297 |
| 68 | iso_pu_bacteria | 2643221723 | 2644676372 | 297 |
| 69 | iso_pu_bacteria | 2842871566 | 2842876303 | 297 |
| 70 | iso_pu_bacteria | 2883577096 | 2883578327 | 297 |
| 71 | 3300005458 | Ga0070681_10010832 | Ga0070681_100108322 | 298 |
| 72 | 3300005530 | Ga0070679_100026667 | Ga0070679_1000266672 | 298 |
| 73 | 3300009553 | Ga0105249_10272812 | Ga0105249_102728122 | 298 |
| 74 | 3300013104 | Ga0157370_10131366 | Ga0157370_101313662 | 298 |
| 75 | 3300014326 | Ga0157380_10484487 | Ga0157380_104844871 | 298 |
| 76 | 3300025912 | Ga0207707_10009652 | Ga0207707_100096524 | 298 |
| 77 | 3300025917 | Ga0207660_10016197 | Ga0207660_100161975 | 298 |
| 78 | 3300031249 | Ga0265339_10154542 | Ga0265339_101545421 | 298 |
| 79 | 3300031251 | Ga0265327_10068032 | Ga0265327_100680322 | 298 |
| 80 | 3300049586 | Ga0501070_0311956 | Ga0501070_0311956_226_1152 | 298 |
| 81 | 3300049744 | Ga0501083_0027866 | Ga0501083_0027866_697_1623 | 298 |
| 82 | 3300031238 | Ga0265332_10030380 | Ga0265332_100303802 | 299 |
| 83 | 3300046455 | Ga0495603_0040456 | Ga0495603_0040456_445_1383 | 299 |
| 84 | 3300046526 | Ga0495666_0098425 | Ga0495666_0098425_211_1149 | 299 |
| 85 | 3300053150 | Ga0500603_011162 | Ga0500603_011162_550_1488 | 299 |
| 86 | iso_pu_bacteria | 2643221557 | 2643803397 | 299 |
| 87 | iso_pu_bacteria | 2643221610 | 2644063766 | 299 |
| 88 | iso_pu_bacteria | 2643221668 | 2644375041 | 299 |
| 89 | iso_pu_bacteria | 2643221675 | 2644414529 | 299 |
| 90 | iso_pu_bacteria | 2643221680 | 2644448057 | 299 |
| 91 | iso_pu_bacteria | 2643221726 | 2644690530 | 299 |
| 92 | 3300005339 | Ga0070660_100107716 | Ga0070660_1001077162 | 300 |
| 93 | 3300005539 | Ga0068853_100011982 | Ga0068853_1000119828 | 300 |
| 94 | 3300005563 | Ga0068855_100029441 | Ga0068855_1000294411 | 300 |
| 95 | 3300005616 | Ga0068852_100052835 | Ga0068852_1000528352 | 300 |
| 96 | 3300006186 | Ga0075369_10077158 | Ga0075369_100771582 | 300 |
| 97 | 3300009093 | Ga0105240_10078533 | Ga0105240_100785332 | 300 |
| 98 | 3300009545 | Ga0105237_10010881 | Ga0105237_1001088111 | 300 |
| 99 | 3300009551 | Ga0105238_10029393 | Ga0105238_100293933 | 300 |
| 100 | 3300013104 | Ga0157370_10009539 | Ga0157370_1000953911 | 300 |
| 101 | 3300013249 | Ga0171463_1003 | Ga0171463_1003435 | 300 |
| 102 | 3300025912 | Ga0207707_10002483 | Ga0207707_100024837 | 300 |
| 103 | 3300025913 | Ga0207695_10181814 | Ga0207695_101818143 | 300 |
| 104 | 3300025914 | Ga0207671_10072172 | Ga0207671_100721723 | 300 |
| 105 | 3300025917 | Ga0207660_10015693 | Ga0207660_100156935 | 300 |
| 106 | 3300025919 | Ga0207657_10007404 | Ga0207657_1000740411 | 300 |
| 107 | 3300025920 | Ga0207649_10075893 | Ga0207649_100758932 | 300 |
| 108 | 3300025921 | Ga0207652_10007209 | Ga0207652_100072096 | 300 |
| 109 | 3300025949 | Ga0207667_10023182 | Ga0207667_100231824 | 300 |
| 110 | 3300026041 | Ga0207639_10039419 | Ga0207639_100394191 | 300 |
| 111 | 3300028573 | Ga0265334_10034550 | Ga0265334_100345502 | 300 |
| 112 | 3300031241 | Ga0265325_10025496 | Ga0265325_100254962 | 300 |
| 113 | 3300031249 | Ga0265339_10056610 | Ga0265339_100566101 | 300 |
| 114 | 3300031712 | Ga0265342_10087430 | Ga0265342_100874302 | 300 |
| 115 | 3300035111 | Ga0373923_0005517 | Ga0373923_0005517_2439_3368 | 300 |
| 116 | 3300035117 | Ga0373953_0009663 | Ga0373953_0009663_219_1148 | 300 |
| 117 | 3300035118 | Ga0373954_0001097 | Ga0373954_0001097_8519_9448 | 300 |
| 118 | 3300035119 | Ga0373956_0013751 | Ga0373956_0013751_1900_2829 | 300 |
| 119 | 3300035120 | Ga0373957_0000767 | Ga0373957_0000767_3306_4235 | 300 |
| 120 | 3300035172 | Ga0373955_0000654 | Ga0373955_0000654_2371_3300 | 300 |
| 121 | 3300036401 | Ga0373937_0020994 | Ga0373937_0020994_2752_3681 | 300 |
| 122 | 3300046459 | Ga0495629_0002829 | Ga0495629_0002829_3329_4258 | 300 |
| 123 | 3300046462 | Ga0495651_0014626 | Ga0495651_0014626_2305_3234 | 300 |
| 124 | 3300046463 | Ga0495653_0006515 | Ga0495653_0006515_1877_2806 | 300 |
| 125 | 3300046511 | Ga0495608_0051724 | Ga0495608_0051724_1010_1939 | 300 |
| 126 | 3300046514 | Ga0495618_0217175 | Ga0495618_0217175_183_1112 | 300 |
| 127 | 3300046516 | Ga0495628_0017390 | Ga0495628_0017390_2004_2933 | 300 |
| 128 | 3300046529 | Ga0495652_0240431 | Ga0495652_0240431_199_1128 | 300 |
| 129 | 3300046533 | Ga0495640_0040771 | Ga0495640_0040771_948_1877 | 300 |
| 130 | 3300046642 | Ga0495634_0010906 | Ga0495634_0010906_313_1242 | 300 |
| 131 | 3300046663 | Ga0495635_0007986 | Ga0495635_0007986_6156_7085 | 300 |
| 132 | 3300046675 | Ga0495657_0016227 | Ga0495657_0016227_1877_2806 | 300 |
| 133 | 3300046679 | Ga0495623_0014466 | Ga0495623_0014466_199_1128 | 300 |
| 134 | 3300046680 | Ga0495646_0002355 | Ga0495646_0002355_9813_10742 | 300 |
| 135 | 3300046809 | Ga0495600_0005919 | Ga0495600_0005919_6156_7085 | 300 |
| 136 | 3300047319 | Ga0495674_0069332 | Ga0495674_0069332_324_1253 | 300 |
| 137 | 3300047444 | Ga0495675_0021807 | Ga0495675_0021807_709_1638 | 300 |
| 138 | 3300047471 | Ga0495684_0002455 | Ga0495684_0002455_10676_11605 | 300 |
| 139 | 3300047673 | Ga0495593_0003882 | Ga0495593_0003882_114_1043 | 300 |
| 140 | 3300048088 | Ga0495602_0046581 | Ga0495602_0046581_682_1611 | 300 |
| 141 | 3300048924 | Ga0496121_0149250 | Ga0496121_0149250_174_1109 | 300 |
| 142 | 3300050516 | nmdc:mga0sz30_140731_c1 | nmdc:mga0sz30_140731_c1_58_996 | 300 |
| 143 | 3300053078 | Ga0495612_0082041 | Ga0495612_0082041_349_1278 | 300 |
| 144 | 3300053084 | Ga0495595_0021405 | Ga0495595_0021405_15_944 | 300 |
| 145 | 3300053085 | Ga0495619_0001733 | Ga0495619_0001733_2677_3606 | 300 |
| 146 | 3300002987 | JGI25159J45721_1000028 | JGI25159J45721_100002849 | 301 |
| 147 | 3300003203 | JGI25406J46586_10000198 | JGI25406J46586_100001987 | 301 |
| 148 | 3300003771 | Ga0055526_1000726 | Ga0055526_100072624 | 301 |
| 149 | 3300003775 | Ga0055524_1000676 | Ga0055524_100067630 | 301 |
| 150 | 3300005353 | Ga0070669_100334013 | Ga0070669_1003340131 | 301 |
| 151 | 3300005985 | Ga0081539_10000425 | Ga0081539_1000042556 | 301 |
| 152 | 3300006038 | Ga0075365_10003192 | Ga0075365_100031925 | 301 |
| 153 | 3300006042 | Ga0075368_10018489 | Ga0075368_100184892 | 301 |
| 154 | 3300006051 | Ga0075364_10002133 | Ga0075364_100021337 | 301 |
| 155 | 3300009148 | Ga0105243_10496900 | Ga0105243_104969001 | 301 |
| 156 | 3300009551 | Ga0105238_10006102 | Ga0105238_100061024 | 301 |
| 157 | 3300025299 | Ga0209256_1000042 | Ga0209256_1000042229 | 301 |
| 158 | 3300025924 | Ga0207694_10133905 | Ga0207694_101339051 | 301 |
| 159 | 3300025972 | Ga0207668_10428717 | Ga0207668_104287171 | 301 |
| 160 | 3300026023 | Ga0207677_10136858 | Ga0207677_101368582 | 301 |
| 161 | 3300026041 | Ga0207639_10183622 | Ga0207639_101836222 | 301 |
| 162 | 3300031548 | Ga0307408_100053697 | Ga0307408_1000536973 | 301 |
| 163 | 3300036401 | Ga0373937_0563899 | Ga0373937_0563899_158_1072 | 301 |
| 164 | 3300046507 | Ga0495606_0002692 | Ga0495606_0002692_15385_16323 | 301 |
| 165 | 3300048915 | Ga0496112_0000022 | Ga0496112_0000022_1962_2900 | 301 |
| 166 | 3300048921 | Ga0496118_0244364 | Ga0496118_0244364_13_927 | 301 |
| 167 | 3300049569 | Ga0501032_0088289 | Ga0501032_0088289_1113_2024 | 301 |
| 168 | 3300049570 | Ga0501033_0015624 | Ga0501033_0015624_3677_4588 | 301 |
| 169 | 3300049570 | Ga0501033_0165101 | Ga0501033_0165101_656_1582 | 301 |
| 170 | 3300049572 | Ga0501036_0145201 | Ga0501036_0145201_1023_1949 | 301 |
| 171 | 3300049580 | Ga0501046_0102128 | Ga0501046_0102128_14_940 | 301 |
| 172 | 3300049581 | Ga0501047_0086047 | Ga0501047_0086047_1287_2213 | 301 |
| 173 | 3300049581 | Ga0501047_0256233 | Ga0501047_0256233_322_1257 | 301 |
| 174 | 3300049588 | Ga0501072_0110333 | Ga0501072_0110333_151_1062 | 301 |
| 175 | 3300049590 | Ga0501074_0093960 | Ga0501074_0093960_406_1317 | 301 |
| 176 | 3300049823 | Ga0501044_0463683 | Ga0501044_0463683_132_1043 | 301 |
| 177 | 3300050491 | nmdc:mga00v17_7396_c1 | nmdc:mga00v17_7396_c1_4100_5017 | 301 |
| 178 | 3300050492 | nmdc:mga0yw44_6755_c1 | nmdc:mga0yw44_6755_c1_3928_4845 | 301 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5ktl-assembly1.cif.gz_A | dihydrodipicolinate synthase from the industrial and evolutionarily important cyanobacteria anabaena variabilis. | 0.95 | 9 | 298 |
| 3flu-assembly1.cif.gz_B | crystal structure of dihydrodipicolinate synthase from the pathogen neisseria meningitidis | 0.9447 | 8 | 295 |
| 1o5k-assembly1.cif.gz_A | crystal structure of dihydrodipicolinate synthase (tm1521) from thermotoga maritima at 1.80 a resolution | 0.9443 | 6 | 296 |
| 7jzc-assembly1.cif.gz_B-2 | dihydrodipicolinate synthase s48w mutant with lysine in the allosteric site, and pyruvate in the catalytic site | 0.9442 | 9 | 295 |
| 3pb2-assembly2.cif.gz_D | characterisation of the first monomeric dihydrodipicolinate synthase variant reveals evolutionary insights | 0.9439 | 9 | 296 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3pb2D00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I | 0.9439 | 9 | 296 | 3.20.20.70 |
| 1xl9D00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I | 0.9422 | 9 | 296 | 3.20.20.70 |
| 2rfgB00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I | 0.9374 | 9 | 299 | 3.20.20.70 |
| 2yxgD00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I | 0.9372 | 9 | 298 | 3.20.20.70 |
| 3a5fA00 | Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I | 0.9356 | 9 | 298 | 3.20.20.70 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A1Y6BD26-F1-model_v4 | 4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) (EC 4.3.3.7) | 0.9616 | 1 | 299 |
GO:0005829
GO:0008840 GO:0009089 GO:0019877 |
| AF-A0A0K0SZR0-F1-model_v4 | 4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) (EC 4.3.3.7) | 0.9604 | 8 | 300 |
GO:0005737
GO:0008840 GO:0009089 GO:0019877 |
| AF-A0A158KLR5-F1-model_v4 | 4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) (EC 4.3.3.7) | 0.9573 | 8 | 297 |
GO:0005737
GO:0008840 GO:0009089 GO:0019877 |
| AF-Q6MRM9-F1-model_v4 | 4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) (EC 4.3.3.7) | 0.9566 | 10 | 295 |
GO:0005737
GO:0008840 GO:0009089 GO:0019877 |
| AF-A0A2A9KG15-F1-model_v4 | 4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) (EC 4.3.3.7) | 0.9539 | 1 | 295 |
GO:0005737
GO:0008840 GO:0009089 GO:0019877 |
Predicted Structure (AlphaFold2)
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