F271108

General Info

Members Datasets Scaffolds Average Seq Length
177 145 103 615

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2896384573|2896391796
Length 671
Sequence GGVGKVNFATAFLAMSLLLVPTAEAQEQPVWHHGLSLVDDLKYPPDFAHFDYVNPEAPKGGDLRLSQTGTFDTFNPLLVKGETAVGLGFVFDTLMKPSEDEISTAYGLLAEGVSFPDDISSATFRLRQEAKWADGKPVTPEDVVFSFDKAKELNPLYQSYYRHVAKAEKTGDRDVTFHFDEKNNHELPHILGQILIVPKHWWEGTGPDGKPRDISRTTLEPVMGSGPYRIASFAPGGTIRYERRTDYWGAALNVNVGQNNFHSITYSFFGEGDVEFEAFRSGNTDYWRENQAMRWATGFDFPAAKDGRVKREEIPNPFRATGVMQAMVPNMRRKPFDDERVRQALNYALDFEELNRTIFFNQYQRVDSFFFGTELASSGLPEGKELEILNEVKDLVPPEVFTTPYTNPVGGTPKKARENQHKAIELLKEAGFELEGNRMVDKETGKPFSFEILLSSPSFERVALPYAQNLKRIGIEASVRTVDPSQYTNRKRDFDYDVTWEVWGQSLSPGNEQVDYWGSEAATREGSRNYAGISDSGADALIQRVIFAKNREALVAATRALDRVLLAHNYVIPLYYKLAAQIAYWDKLARPQELPKYGLGFPDVWWSKSAACNLPPRVRCSCICGSSGQAGRLQFTPDRRLIRNAQLLDQICAASAFQGSPVFDDFASAGR

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
3 2509276019 Ensifer aridi TW10 Isolate Nodule
4 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
5 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
6 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
7 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
8 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
9 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
10 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
11 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
12 2585427593 Rhizobium tropici CF286 Isolate Rhizosphere
13 2643221629 Devosia sp. Root105 Isolate Unclassified
14 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
15 2643221651 Afipia sp. Root123D2 Isolate Unclassified
16 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
17 2643221662 Devosia sp. Root413D1 Isolate Unclassified
18 2643221688 Rhizobium sp. Root482 Isolate Unclassified
19 2643221718 Rhizobium sp. Root268 Isolate Unclassified
20 2643221719 Rhizobium sp. Root274 Isolate Unclassified
21 2643221723 Ensifer sp. Root278 Isolate Unclassified
22 2657244999 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
23 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
24 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
25 2738541317 Rhizobium halophytocola DSM 21600 Isolate Unclassified
26 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
27 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
28 2773857925 Microvirga vignae BR3299 Isolate Unclassified
29 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
30 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
31 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
32 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
33 2802429268 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
34 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
35 2837651117 Pseudohoeflea suaedae YC6898 Isolate Unclassified
36 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
37 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
38 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
39 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
40 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
41 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
42 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
43 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
44 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
45 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
46 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
47 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
48 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
49 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
50 2909042592 Labrys sp. LIt4 Isolate Nodule
51 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
52 2913308742 Rhizobium halophytocola DSM 21600 Isolate Unclassified
53 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
54 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
55 2936996657 Sinorhizobium meliloti USDA1025 Isolate Nodule
56 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
57 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
58 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
59 3003930520 Sinorhizobium sp. BG8 Isolate Unclassified
60 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
61 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
62 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
63 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
64 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
65 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
66 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
67 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
68 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
69 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
70 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
71 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
72 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
73 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
74 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
75 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
76 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
77 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
78 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
79 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
80 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
81 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
82 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
83 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
84 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
85 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
86 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
87 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
88 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
89 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
90 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
91 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
92 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
93 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
94 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
96 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
97 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
99 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
100 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
101 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
102 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
103 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
104 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
105 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
106 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
107 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
108 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
109 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
110 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
111 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
112 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
113 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
114 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
115 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
116 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
117 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
118 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
121 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
122 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
123 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
124 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
125 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
126 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
127 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
128 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
129 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
130 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
134 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
135 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
136 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
137 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
138 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
139 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
140 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
141 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
142 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
143 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified
144 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified
145 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 58.19
Metatranscriptomes 0
Isolates 41.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.6
Nodule 19.77
Rhizoplane 7.34
Rhizosphere 14.12
Stem 0
Stem Tuber 0
Unclassified 36.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000075 3300002704 Bacteria 62215
2 JGI25156J39149_1000103 3300002705 Bacteria 62289
3 JGI25162J39368_1000353 3300002737 Bacteria 39445
4 JGI25154J39366_1000018 3300002738 Bacteria 251612
5 JGI25157J39369_1000074 3300002741 Bacteria 88240
6 JGI25159J45721_1000023 3300002987 Bacteria 116643
7 JGI25159J45721_1000394 3300002987 Bacteria 20294
8 JGI25165J46597_1000390 3300003214 Bacteria 46779
9 JGI25165J46597_1000431 3300003214 Bacteria 42779
10 rootH1_10080111 3300003323 Bacteria 3981
11 JGI25160J50197_1000044 3300003354 Bacteria 145379
12 JGI25160J50197_1000061 3300003354 Bacteria 116643
13 JGI25160J50197_1009287 3300003354 Bacteria 3664
14 JGI25161J50226_1000028 3300003374 Bacteria 145379
15 JGI25161J50226_1000200 3300003374 Bacteria 39159
16 Ga0055526_1001787 3300003771 Bacteria 14899
17 Ga0055536_1008531 3300003781 Bacteria 4392
18 Ga0055531_10013717 3300003794 Bacteria 3714
19 Ga0055543_1000054 3300004625 Bacteria 104176
20 Ga0055543_1000504 3300004625 Bacteria 22457
21 Ga0065165_1000047 3300005262 Bacteria 197811
22 Ga0065165_1000318 3300005262 Bacteria 78352
23 Ga0065165_1023596 3300005262 Bacteria 2081
24 Ga0075370_10015423 3300006353 Bacteria 4092
25 Ga0099826_10075318 3300006948 Bacteria 2124
26 Ga0105240_10209303 3300009093 Bacteria 2280
27 Ga0171463_1001 3300013249 Bacteria 1406070
28 Ga0163163_10016605 3300014325 Bacteria 6844
29 Ga0183363_1203 3300015690 Bacteria 12211
30 Ga0214544_1000652 3300021320 Bacteria 65892
31 Ga0214544_1014627 3300021320 Bacteria 8663
32 Ga0214544_1018784 3300021320 Bacteria 5571
33 Ga0214542_1000146 3300021321 Bacteria 103035
34 Ga0214542_1003749 3300021321 Bacteria 30610
35 Ga0214542_1013940 3300021321 Bacteria 9304
36 Ga0214543_1000054 3300021327 Bacteria 140288
37 Ga0214543_1000091 3300021327 Bacteria 113539
38 Ga0214543_1004508 3300021327 Bacteria 26342
39 Ga0214543_1005580 3300021327 Bacteria 22983
40 Ga0213875_10020904 3300021388 Bacteria 3139
41 Ga0228710_1019044 3300022740 Bacteria 6290
42 Ga0209435_100044 3300025206 Bacteria 99051
43 Ga0209436_100222 3300025208 Bacteria 26108
44 Ga0209437_100050 3300025233 Bacteria 394010
45 Ga0209646_1000151 3300025246 Bacteria 99050
46 Ga0209026_1000170 3300025250 Bacteria 99050
47 Ga0209759_1000186 3300025256 Bacteria 100413
48 Ga0209233_1000037 3300025261 Bacteria 554620
49 Ga0209130_1000005 3300025284 Bacteria 599620
50 Ga0209130_1000093 3300025284 Bacteria 145707
51 Ga0209676_1004592 3300025292 Bacteria 7625
52 Ga0209564_1000590 3300025295 Bacteria 57280
53 Ga0209758_1000699 3300025297 Bacteria 49788
54 Ga0209050_1011561 3300025298 Bacteria 4165
55 Ga0209256_1000741 3300025299 Bacteria 42804
56 Ga0207426_1000012 3300025302 Bacteria 730942
57 Ga0207426_1000015 3300025302 Bacteria 599316
58 Ga0207426_1000142 3300025302 Bacteria 194023
59 Ga0209051_1005252 3300025303 Bacteria 7640
60 Ga0209257_1002111 3300025304 Bacteria 20790
61 Ga0209282_1034143 3300027666 Bacteria 3093
62 Ga0307408_100033796 3300031548 Bacteria 3576
63 Ga0315914_1034968 3300031967 Bacteria 2124
64 Ga0315913_1044608 3300033430 Bacteria 2124
65 Ga0373927_0000103 3300035695 Bacteria 64324
66 Ga0373925_0004265 3300037068 Bacteria 10831
67 Ga0373925_0042734 3300037068 Bacteria 3363
68 Ga0436364_1481012 3300037853 Bacteria 3206
69 Ga0400489_14710 3300039093 Unclassified 3828
70 Ga0436365_1378860 3300039437 Bacteria 5476
71 Ga0439436_0008691 3300041404 Bacteria 3122
72 Ga0439432_013428 3300042006 Bacteria 2787
73 Ga0466970_0022734 3300044765 Bacteria 3271
74 Ga0495606_0048510 3300046507 Bacteria 2792
75 Ga0495686_0001105 3300047472 Bacteria 32027
76 Ga0496104_0000396 3300048907 Bacteria 38158
77 Ga0496104_0005445 3300048907 Bacteria 11143
78 Ga0496104_0028302 3300048907 Bacteria 5195
79 Ga0496105_0000025 3300048908 Bacteria 150594
80 Ga0496105_0015568 3300048908 Bacteria 6064
81 Ga0496108_0008880 3300048911 Bacteria 8147
82 Ga0496110_0018220 3300048913 Bacteria 5884
83 Ga0496112_0005200 3300048915 Bacteria 11193
84 Ga0496113_0002448 3300048916 Bacteria 10804
85 Ga0496114_0062870 3300048917 Bacteria 3108
86 Ga0496115_0020115 3300048918 Bacteria 5145
87 Ga0496115_0040106 3300048918 Bacteria 3721
88 Ga0496119_0007179 3300048922 Bacteria 10095
89 Ga0496121_0011777 3300048924 Bacteria 9646
90 Ga0496122_0079638 3300048925 Bacteria 2288
91 Ga0496123_0064561 3300048926 Bacteria 2332
92 Ga0496125_0055641 3300048928 Bacteria 3221
93 Ga0496126_0004033 3300048929 Bacteria 17863
94 Ga0501031_0002176 3300049568 Bacteria 12377
95 Ga0501032_0018270 3300049569 Bacteria 4914
96 Ga0501038_0024372 3300049574 Bacteria 5399
97 Ga0501044_0034169 3300049823 Bacteria 5336
98 Ga0500568_0005230 3300053139 Bacteria 6750
99 Ga0500573_0002070 3300053140 Bacteria 9861
100 Ga0500573_0042853 3300053140 Bacteria 2613
101 Ga0500616_0008613 3300053153 Bacteria 6311
102 Ga0500633_0005504 3300053160 Bacteria 3017
103 Ga0500634_0000023 3300053161 Bacteria 90425

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049823 Ga0501044_0034169 Ga0501044_0034169_904_2754 573
2 3300039093 Ga0400489_14710 Ga0400489_14710_225_2051 574
3 3300048907 Ga0496104_0000396 Ga0496104_0000396_10523_12394 583
4 3300048907 Ga0496104_0005445 Ga0496104_0005445_4673_6544 583
5 3300048908 Ga0496105_0000025 Ga0496105_0000025_61648_63519 583
6 3300048908 Ga0496105_0015568 Ga0496105_0015568_928_2799 583
7 3300048915 Ga0496112_0005200 Ga0496112_0005200_1279_3150 583
8 3300048917 Ga0496114_0062870 Ga0496114_0062870_824_2695 583
9 3300048918 Ga0496115_0020115 Ga0496115_0020115_516_2387 583
10 3300048922 Ga0496119_0007179 Ga0496119_0007179_7926_9797 583
11 3300048928 Ga0496125_0055641 Ga0496125_0055641_1313_3184 583
12 iso_pu_bacteria 2920822456 2920828975 583
13 3300013249 Ga0171463_1001 Ga0171463_10011365 586
14 iso_pu_bacteria 2884298095 2884301177 586
15 iso_pu_bacteria 2891048133 2891048320 586
16 3300014325 Ga0163163_10016605 Ga0163163_100166057 587
17 3300037068 Ga0373925_0042734 Ga0373925_0042734_112_1971 587
18 3300048907 Ga0496104_0028302 Ga0496104_0028302_1620_3479 587
19 3300048911 Ga0496108_0008880 Ga0496108_0008880_1387_3246 587
20 3300048913 Ga0496110_0018220 Ga0496110_0018220_276_2135 587
21 3300048916 Ga0496113_0002448 Ga0496113_0002448_1475_3334 587
22 3300048918 Ga0496115_0040106 Ga0496115_0040106_1041_2900 587
23 3300053153 Ga0500616_0008613 Ga0500616_0008613_2192_4120 587
24 iso_pu_bacteria 2508501050 2508727702 587
25 iso_pu_bacteria 2508501114 2509079901 587
26 iso_pu_bacteria 2522572158 2523105458 587
27 iso_pu_bacteria 2523231067 2523468792 587
28 iso_pu_bacteria 2773857925 2774869113 587
29 iso_pu_bacteria 2775506901 2776258431 587
30 iso_pu_bacteria 2835312727 2835319694 587
31 iso_pu_bacteria 2882456835 2882457658 587
32 iso_pu_bacteria 2894232714 2894236122 587
33 3300015690 Ga0183363_1203 Ga0183363_12039 589
34 3300021388 Ga0213875_10020904 Ga0213875_100209042 589
35 3300035695 Ga0373927_0000103 Ga0373927_0000103_46021_47829 589
36 3300037068 Ga0373925_0004265 Ga0373925_0004265_7201_9009 589
37 3300037853 Ga0436364_1481012 Ga0436364_1481012_712_2565 589
38 iso_pu_bacteria 2643221629 2644168980 590
39 iso_pu_bacteria 2643221662 2644347531 590
40 3300002987 JGI25159J45721_1000023 JGI25159J45721_100002385 591
41 3300003354 JGI25160J50197_1000061 JGI25160J50197_100006185 591
42 3300003374 JGI25161J50226_1000200 JGI25161J50226_10002004 591
43 3300003771 Ga0055526_1001787 Ga0055526_10017875 591
44 3300003781 Ga0055536_1008531 Ga0055536_10085313 591
45 3300003794 Ga0055531_10013717 Ga0055531_100137172 591
46 3300004625 Ga0055543_1000504 Ga0055543_100050420 591
47 3300005262 Ga0065165_1000047 Ga0065165_100004736 591
48 3300025208 Ga0209436_100222 Ga0209436_1002222 591
49 3300025284 Ga0209130_1000005 Ga0209130_1000005563 591
50 3300025292 Ga0209676_1004592 Ga0209676_10045924 591
51 3300025295 Ga0209564_1000590 Ga0209564_100059022 591
52 3300025298 Ga0209050_1011561 Ga0209050_10115612 591
53 3300025299 Ga0209256_1000741 Ga0209256_100074136 591
54 3300025302 Ga0207426_1000015 Ga0207426_100001536 591
55 3300025303 Ga0209051_1005252 Ga0209051_10052525 591
56 3300025304 Ga0209257_1002111 Ga0209257_100211118 591
57 iso_pu_bacteria 2995392953 2995394124 591
58 iso_pu_bacteria 8005246636 8005247913 591
59 iso_pu_bacteria 2913295892 2913298481 592
60 iso_pu_bacteria 8054563764 8054565660 592
61 iso_pu_bacteria 8055431914 8055433858 592
62 3300053161 Ga0500634_0000023 Ga0500634_0000023_10249_12096 593
63 iso_pu_bacteria 2643221651 2644290482 593
64 iso_pu_bacteria 2989776772 2989776801 593
65 iso_pu_bacteria 2643221688 2644495832 594
66 iso_pu_bacteria 2775507049 2776915951 594
67 iso_pu_bacteria 2837651117 2837651528 594
68 iso_pu_bacteria 2842521101 2842527219 594
69 iso_pu_bacteria 2920822456 2920822724 594
70 3300048929 Ga0496126_0004033 Ga0496126_0004033_3132_5021 595
71 iso_pu_bacteria 2585427593 2585840670 595
72 iso_pu_bacteria 2909042592 2909044575 595
73 3300009093 Ga0105240_10209303 Ga0105240_102093031 596
74 3300039437 Ga0436365_1378860 Ga0436365_1378860_2095_4029 596
75 3300053140 Ga0500573_0002070 Ga0500573_0002070_6017_7849 597
76 iso_pu_bacteria 2582581307 2585273425 597
77 iso_pu_bacteria 2667528174 2671115872 597
78 iso_pu_bacteria 2738541317 2738946717 597
79 iso_pu_bacteria 2852387548 2852387833 597
80 iso_pu_bacteria 2913308742 2913311925 597
81 iso_pu_bacteria 2989771324 2989774571 597
82 iso_pu_bacteria 8046767195 8046768709 597
83 iso_pu_bacteria 8057575449 8057582496 597
84 3300031548 Ga0307408_100033796 Ga0307408_1000337962 598
85 iso_pu_bacteria 2582581866 2585396441 598
86 iso_pu_bacteria 2738543031 2739349712 598
87 3300003354 JGI25160J50197_1009287 JGI25160J50197_10092872 599
88 3300005262 Ga0065165_1023596 Ga0065165_10235962 599
89 3300025302 Ga0207426_1000142 Ga0207426_1000142130 599
90 3300041404 Ga0439436_0008691 Ga0439436_0008691_429_2294 599
91 3300042006 Ga0439432_013428 Ga0439432_013428_277_2112 599
92 3300049568 Ga0501031_0002176 Ga0501031_0002176_3311_5215 599
93 3300049569 Ga0501032_0018270 Ga0501032_0018270_956_2860 599
94 3300049574 Ga0501038_0024372 Ga0501038_0024372_1291_3195 599
95 3300053139 Ga0500568_0005230 Ga0500568_0005230_4332_6167 599
96 3300053160 Ga0500633_0005504 Ga0500633_0005504_242_2077 599
97 iso_pu_bacteria 2513237159 2514001618 599
98 iso_pu_bacteria 2558860100 2558862841 599
99 iso_pu_bacteria 2582581865 2585389881 599
100 iso_pu_bacteria 2643221653 2644298241 599
101 iso_pu_bacteria 2643221719 2644656493 599
102 iso_pu_bacteria 2838074704 2838074785 599
103 iso_pu_bacteria 2896384573 2896386121 599
104 iso_pu_bacteria 2920760137 2920764024 599
105 3300002737 JGI25162J39368_1000353 JGI25162J39368_100035328 600
106 3300003214 JGI25165J46597_1000390 JGI25165J46597_100039044 600
107 3300003214 JGI25165J46597_1000431 JGI25165J46597_10004311 600
108 3300006948 Ga0099826_10075318 Ga0099826_100753182 600
109 3300022740 Ga0228710_1019044 Ga0228710_10190446 600
110 3300025233 Ga0209437_100050 Ga0209437_10005041 600
111 3300025261 Ga0209233_1000037 Ga0209233_100003783 600
112 3300027666 Ga0209282_1034143 Ga0209282_10341433 600
113 3300031967 Ga0315914_1034968 Ga0315914_10349681 600
114 3300033430 Ga0315913_1044608 Ga0315913_10446082 600
115 3300048925 Ga0496122_0079638 Ga0496122_0079638_36_1889 600
116 3300048926 Ga0496123_0064561 Ga0496123_0064561_143_1996 600
117 iso_pu_bacteria 2524023207 2524452556 600
118 iso_pu_bacteria 2643221637 2644207394 600
119 iso_pu_bacteria 2643221718 2644651042 600
120 iso_pu_bacteria 2855839649 2855846200 600
121 iso_pu_bacteria 2855839649 2855846632 600
122 iso_pu_bacteria 2936996657 2936998820 600
123 iso_pu_bacteria 3003930520 3003931315 600
124 3300002704 JGI25155J39150_1000075 JGI25155J39150_100007550 601
125 3300002705 JGI25156J39149_1000103 JGI25156J39149_10001039 601
126 3300002738 JGI25154J39366_1000018 JGI25154J39366_1000018225 601
127 3300002741 JGI25157J39369_1000074 JGI25157J39369_100007451 601
128 3300002987 JGI25159J45721_1000394 JGI25159J45721_100039411 601
129 3300003323 rootH1_10080111 rootH1_100801114 601
130 3300003354 JGI25160J50197_1000044 JGI25160J50197_100004475 601
131 3300003374 JGI25161J50226_1000028 JGI25161J50226_100002864 601
132 3300004625 Ga0055543_1000054 Ga0055543_100005459 601
133 3300005262 Ga0065165_1000318 Ga0065165_100031858 601
134 3300006353 Ga0075370_10015423 Ga0075370_100154234 601
135 3300021320 Ga0214544_1000652 Ga0214544_10006525 601
136 3300021320 Ga0214544_1014627 Ga0214544_10146277 601
137 3300021320 Ga0214544_1018784 Ga0214544_10187844 601
138 3300021321 Ga0214542_1000146 Ga0214542_100014691 601
139 3300021321 Ga0214542_1003749 Ga0214542_10037496 601
140 3300021321 Ga0214542_1013940 Ga0214542_10139404 601
141 3300021327 Ga0214543_1000054 Ga0214543_10000545 601
142 3300021327 Ga0214543_1000091 Ga0214543_1000091107 601
143 3300021327 Ga0214543_1004508 Ga0214543_100450813 601
144 3300021327 Ga0214543_1005580 Ga0214543_10055805 601
145 3300025206 Ga0209435_100044 Ga0209435_10004462 601
146 3300025246 Ga0209646_1000151 Ga0209646_100015162 601
147 3300025250 Ga0209026_1000170 Ga0209026_100017062 601
148 3300025256 Ga0209759_1000186 Ga0209759_100018664 601
149 3300025284 Ga0209130_1000093 Ga0209130_100009375 601
150 3300025297 Ga0209758_1000699 Ga0209758_100069947 601
151 3300025302 Ga0207426_1000012 Ga0207426_1000012642 601
152 3300044765 Ga0466970_0022734 Ga0466970_0022734_563_2401 601
153 3300046507 Ga0495606_0048510 Ga0495606_0048510_247_2085 601
154 3300047472 Ga0495686_0001105 Ga0495686_0001105_22988_24826 601
155 3300048924 Ga0496121_0011777 Ga0496121_0011777_1671_3509 601
156 3300053140 Ga0500573_0042853 Ga0500573_0042853_225_2072 601
157 iso_pu_bacteria 2509276019 2509378836 601
158 iso_pu_bacteria 2558860100 2558864614 601
159 iso_pu_bacteria 2643221723 2644671361 601
160 iso_pu_bacteria 2657244999 2657682755 601
161 iso_pu_bacteria 2690316117 2692319668 601
162 iso_pu_bacteria 2751185821 2753460044 601
163 iso_pu_bacteria 2791355082 2792583448 601
164 iso_pu_bacteria 2791355094 2792643426 601
165 iso_pu_bacteria 2791355094 2792644059 601
166 iso_pu_bacteria 2802429268 2804750237 601
167 iso_pu_bacteria 2802429268 2804753977 601
168 iso_pu_bacteria 2842922631 2842922785 601
169 iso_pu_bacteria 2847417321 2847421108 601
170 iso_pu_bacteria 2847417321 2847421661 601
171 iso_pu_bacteria 2848992105 2848995945 601
172 iso_pu_bacteria 2848992105 2848996435 601
173 iso_pu_bacteria 2850079185 2850083130 601
174 iso_pu_bacteria 2855872281 2855877662 601
175 iso_pu_bacteria 2896384573 2896391796 601
176 iso_pu_bacteria 643692032 643692372 601
177 iso_pu_bacteria 8049293176 8049296574 601

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00496

SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

104

525

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
7z8e-assembly1.cif.gz_A crystal structure of the substrate-binding protein yeja from s. meliloti in complex with peptide fragment 0.9884 27 600
7z8e-assembly1.cif.gz_A crystal structure of the substrate-binding protein yeja from s. meliloti in complex with peptide fragment 0.9602 27 600
7z6f-assembly1.cif.gz_E crystal structure of the substrate-binding protein yeja in complex with peptide fragment 0.9366 30 596
3lvu-assembly2.cif.gz_B crystal structure of abc transporter, periplasmic substrate-binding protein spo2066 from silicibacter pomeroyi 0.926 322 564
3pam-assembly1.cif.gz_A crystal structure of a domain of transmembrane protein of abc-type oligopeptide transport system from bartonella henselae str. houston-1 0.9225 324 567
ID Description Score Start End Superfamily
af_P33913_25_296_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9499 32 306 3.40.190.10
5icqA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9449 32 316 3.40.190.10
af_P33913_25_296_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9303 32 306 3.40.190.10
af_P33913_303_559_3.10.105.10 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.9139 320 566 3.10.105.10
4onyB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9105 33 315 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A7W8XWB4-F1-model_v4 Microcin C transport system substrate-binding protein 0.9724 10 601 GO:0015833
GO:0030288
GO:0042884
GO:0043190
GO:1904680
AF-W7WFL3-F1-model_v4 deleted 0.9694 410 554
AF-A0A3D5HF23-F1-model_v4 Solute-binding protein family 5 domain-containing protein 0.9613 28 598 GO:0015833
GO:0030288
GO:0042884
GO:0043190
GO:1904680
AF-A0A349UWW8-F1-model_v4 Solute-binding protein family 5 domain-containing protein 0.9595 319 524 GO:0015833
GO:0030288
GO:0042884
GO:1904680
AF-A0A3D3UFQ2-F1-model_v4 Solute-binding protein family 5 domain-containing protein 0.9583 154 596 GO:0015833
GO:0030288
GO:0042884
GO:0043190
GO:1904680

Feature Viewer

pLDDT pTM Quality
91.62 0.89 High
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Predicted Structure (AlphaFold2)

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