F270223

General Info

Members Datasets Scaffolds Average Seq Length
177 147 354 298

Family's Representative Sequence

Representative Sequence 3300013296|Ga0157374_10025242|Ga0157374_100252421
Length 340
Sequence MAWYKFRLTASYLSRYIKRMTSQPSIVIIGSANVDMVARAGHLPRPGETVMGESFATVPGGKGANQAVACARLGARVTFVGRVGDDAFGRSTNDGLRAEGIDTTYLTVDEEASTGVALIGVSSTTGENSIIVVPGANGRVSTADVDSAAEVIRSADMVICQLEIPIEAVQRAFEIARAAGVRTVLNPAPARELPAGLLELTSVVTPNEDEARALVSIPERKPHPNPLLGKEMEPEARIAAAELRRQGASMVVVTMGAAGVLVDDGGVVEVVEGRRVDRVVDTTAAGDCFTGALAVSLSEGFTIVEAARFANGAAALSVTREGAQPSLPTRTEVDAIMRAF

Samples

Sample ID Description Type Environment
1 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
35 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
36 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
44 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
67 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
70 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
71 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
72 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
73 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
74 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
77 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
78 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
79 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
83 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
84 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
85 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
86 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
87 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
88 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
89 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
90 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
91 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
94 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
95 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
96 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
97 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
98 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
99 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
102 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
103 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
104 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
120 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
121 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
122 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
123 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
124 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
125 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
129 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
130 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
131 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
132 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
133 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
134 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
135 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
136 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
137 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
138 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
139 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
140 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
141 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 2643221566 Microbacterium sp. Root166 Isolate Unclassified
144 2831864461 Roseateles noduli HZ7 Isolate Nodule
145 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
146 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
147 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.05
Metatranscriptomes 1.13
Isolates 2.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.21
Nodule 1.69
Rhizoplane 3.39
Rhizosphere 70.06
Stem 0
Stem Tuber 0
Unclassified 5.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157374_10025242 3300013296 Bacteria 5332
2 rootH2_10109906 3300003320 Bacteria 1842
3 rootL2_10004836 3300003322 Bacteria 21607
4 rootH1_10001528 3300003323 Bacteria 15441
5 rootH1_10060663 3300003323 Bacteria 1780
6 Ga0055524_1001321 3300003775 Bacteria 14468
7 Ga0055531_10002503 3300003794 Bacteria 12244
8 Ga0055531_10007291 3300003794 Bacteria 6066
9 Ga0065165_1000239 3300005262 Bacteria 94061
10 Ga0065165_1004139 3300005262 Bacteria 9319
11 Ga0070658_10006189 3300005327 Bacteria 9702
12 Ga0070670_100038173 3300005331 Bacteria 4130
13 Ga0070661_100139196 3300005344 Bacteria 1828
14 Ga0070692_10051226 3300005345 Bacteria 2146
15 Ga0070671_100305466 3300005355 Bacteria 1355
16 Ga0070714_100000032 3300005435 Bacteria 133378
17 Ga0070714_100076983 3300005435 Bacteria 2897
18 Ga0070714_100372594 3300005435 Bacteria 1344
19 Ga0070713_100006536 3300005436 Bacteria 8093
20 Ga0070713_100034248 3300005436 Bacteria 4078
21 Ga0068853_100040750 3300005539 Bacteria 3964
22 Ga0070696_100157292 3300005546 Bacteria 1672
23 Ga0068855_100093884 3300005563 Unclassified 3460
24 Ga0068855_100180827 3300005563 Unclassified 2384
25 Ga0068856_100023953 3300005614 Bacteria 5937
26 Ga0068864_100182577 3300005618 Bacteria 1919
27 Ga0068860_100028243 3300005843 Bacteria 5400
28 Ga0081455_10000157 3300005937 Bacteria 82320
29 Ga0070717_10000085 3300006028 Bacteria 74645
30 Ga0070717_10000554 3300006028 Bacteria 23714
31 Ga0075365_10005667 3300006038 Bacteria 6767
32 Ga0075365_10011998 3300006038 Bacteria 5122
33 Ga0075364_10004092 3300006051 Bacteria 8367
34 Ga0070712_100335444 3300006175 Unclassified 1233
35 Ga0075366_10060357 3300006195 Bacteria 2253
36 Ga0075366_10153015 3300006195 Bacteria 1397
37 Ga0097621_100237986 3300006237 Bacteria 1591
38 Ga0068871_100227160 3300006358 Bacteria 1619
39 Ga0075428_100255578 3300006844 Unclassified 1887
40 Ga0075431_100002588 3300006847 Bacteria 17469
41 Ga0075431_100210838 3300006847 Bacteria 1984
42 Ga0075431_100345125 3300006847 Bacteria 1498
43 Ga0068865_100178650 3300006881 Bacteria 1633
44 Ga0099823_1014292 3300006944 Bacteria 7938
45 Ga0105248_10072307 3300009177 Bacteria 3876
46 Ga0157319_1000031 3300012497 Bacteria 48442
47 Ga0157373_10206214 3300013100 Unclassified 1386
48 Ga0157371_10003784 3300013102 Bacteria 13544
49 Ga0157369_10001357 3300013105 Bacteria 30238
50 Ga0157378_10132077 3300013297 Bacteria 2312
51 Ga0157372_10183446 3300013307 Bacteria 2423
52 Ga0157372_10674307 3300013307 Bacteria 1203
53 Ga0163163_10734607 3300014325 Bacteria 1051
54 Ga0157379_10031450 3300014968 Bacteria 4728
55 Ga0157376_10017348 3300014969 Bacteria 5489
56 Ga0157376_10072472 3300014969 Bacteria 2930
57 Ga0163161_10050824 3300017792 Bacteria 3001
58 Ga0206353_11940513 3300020082 Bacteria 2728
59 Ga0209673_1019481 3300025273 Bacteria 2434
60 Ga0209673_1020628 3300025273 Bacteria 2329
61 Ga0209564_1000003 3300025295 Bacteria 1585848
62 Ga0209256_1000637 3300025299 Bacteria 47908
63 Ga0209256_1008604 3300025299 Bacteria 4687
64 Ga0209051_1001568 3300025303 Bacteria 18889
65 Ga0209257_1003314 3300025304 Bacteria 13970
66 Ga0209257_1004846 3300025304 Bacteria 9957
67 Ga0207705_10005745 3300025909 Bacteria 9258
68 Ga0207693_10304062 3300025915 Unclassified 1249
69 Ga0207657_10087742 3300025919 Bacteria 2602
70 Ga0207649_10074932 3300025920 Bacteria 2173
71 Ga0207700_10046569 3300025928 Bacteria 3208
72 Ga0207664_10000059 3300025929 Bacteria 119580
73 Ga0207664_10031462 3300025929 Unclassified 4060
74 Ga0207709_10076683 3300025935 Bacteria 2140
75 Ga0207704_10179950 3300025938 Bacteria 1527
76 Ga0207665_10024239 3300025939 Bacteria 4000
77 Ga0207711_10042436 3300025941 Bacteria 3876
78 Ga0207661_10045013 3300025944 Bacteria 3491
79 Ga0207667_10025448 3300025949 Bacteria 6475
80 Ga0207639_10023897 3300026041 Bacteria 4417
81 Ga0207678_10350867 3300026067 Bacteria 1272
82 Ga0207641_10302355 3300026088 Bacteria 1512
83 Ga0207676_10552133 3300026095 Bacteria 1101
84 Ga0209389_1038439 3300027296 Bacteria 3768
85 Ga0207428_10003086 3300027907 Bacteria 16392
86 Ga0268264_10011984 3300028381 Bacteria 7140
87 Ga0265762_1006211 3300030760 Bacteria 2141
88 Ga0265330_10007804 3300031235 Bacteria 5194
89 Ga0265330_10014926 3300031235 Bacteria 3597
90 Ga0265330_10032581 3300031235 Bacteria 2335
91 Ga0265316_10000756 3300031344 Bacteria 35734
92 Ga0265316_10017891 3300031344 Bacteria 6109
93 Ga0265314_10060678 3300031711 Bacteria 2580
94 Ga0265342_10002773 3300031712 Bacteria 14840
95 Ga0265342_10003308 3300031712 Bacteria 13311
96 Ga0316578_10001185 3300031728 Bacteria 10326
97 Ga0307416_100088595 3300032002 Bacteria 2647
98 Ga0316574_0079420 3300035398 Bacteria 2081
99 Ga0373935_0158563 3300035692 Bacteria 1541
100 Ga0373937_0475100 3300036401 Bacteria 1187
101 Ga0316584_0028722 3300036712 Bacteria 4104
102 Ga0395898_0104128 3300037466 Bacteria 2722
103 Ga0395901_0235366 3300038443 Bacteria 1911
104 Ga0436365_1544003 3300039437 Unclassified 1072
105 Ga0439465_0017133 3300041413 Bacteria 2261
106 Ga0451837_0103136 3300041494 Bacteria 1948
107 Ga0451853_0768032 3300041512 Bacteria 1338
108 Ga0439454_002778 3300042011 Bacteria 1885
109 Ga0450890_002090 3300042127 Bacteria 2801
110 Ga0450896_000717 3300042133 Bacteria 3689
111 Ga0439446_0027652 3300042156 Bacteria 1629
112 Ga0439459_0000441 3300042438 Bacteria 5329
113 Ga0450916_002574 3300042530 Bacteria 1938
114 Ga0466959_0010178 3300045049 Bacteria 6714
115 Ga0495629_0010325 3300046459 Bacteria 6801
116 Ga0495609_0108313 3300046538 Bacteria 1200
117 Ga0495597_0002203 3300046542 Bacteria 12785
118 Ga0495622_0002843 3300046557 Bacteria 8257
119 Ga0495634_0182510 3300046642 Bacteria 1313
120 Ga0495611_0036796 3300046648 Bacteria 2174
121 Ga0495593_0107350 3300047673 Bacteria 1427
122 Ga0496104_0304249 3300048907 Bacteria 1507
123 Ga0496106_0149484 3300048909 Bacteria 1842
124 Ga0496110_0077031 3300048913 Bacteria 2966
125 Ga0496113_0110849 3300048916 Bacteria 2136
126 Ga0496114_0347196 3300048917 Bacteria 1312
127 Ga0496115_0037066 3300048918 Bacteria 3863
128 Ga0496124_0023701 3300048927 Bacteria 5597
129 Ga0496126_0069418 3300048929 Bacteria 3143
130 Ga0501032_0012613 3300049569 Bacteria 6032
131 Ga0501032_0078914 3300049569 Bacteria 2192
132 Ga0501033_0041541 3300049570 Bacteria 3431
133 Ga0501034_0079527 3300049571 Bacteria 3282
134 Ga0501036_0305888 3300049572 Bacteria 1329
135 Ga0501037_0031965 3300049573 Bacteria 3886
136 Ga0501038_0003604 3300049574 Bacteria 14415
137 Ga0501040_0001226 3300049576 Bacteria 16303
138 Ga0501042_0003583 3300049578 Bacteria 9785
139 Ga0501042_0003911 3300049578 Bacteria 9425
140 Ga0501042_0224411 3300049578 Bacteria 1355
141 Ga0501043_0014263 3300049579 Bacteria 6219
142 Ga0501047_0005730 3300049581 Bacteria 11691
143 Ga0501048_0000702 3300049582 Bacteria 24393
144 Ga0501079_0164073 3300049741 Unclassified 1733
145 Ga0501035_0012818 3300049822 Bacteria 7742
146 Ga0501035_0139640 3300049822 Bacteria 2107
147 nmdc:mga00v17_41437_c1 3300050491 Bacteria 2766
148 nmdc:mga0yw44_2225_c1 3300050492 Bacteria 8175
149 nmdc:mga05p37_70771_c1 3300050507 Bacteria 4291
150 nmdc:mga06r32_131825_c1 3300050510 Bacteria 2472
151 nmdc:mga06r32_159343_c1 3300050510 Bacteria 2239
152 nmdc:mga06r32_19235_c1 3300050510 Bacteria 6267
153 nmdc:mga06r32_246059_c1 3300050510 Bacteria 1776
154 nmdc:mga06r32_30629_c1 3300050510 Bacteria 5049
155 nmdc:mga08y16_17120_c1 3300050511 Bacteria 7631
156 nmdc:mga0n895_243551_c1 3300050512 Unclassified 1825
157 nmdc:mga0rr50_53_c1 3300050513 Bacteria 63727
158 nmdc:mga0sz30_7772_c1 3300050516 Bacteria 4029
159 Ga0500651_0004902 3300053093 Bacteria 7567
160 Ga0500566_0135222 3300053094 Bacteria 1314
161 Ga0500569_002051 3300053109 Bacteria 3918
162 Ga0500595_004535 3300053119 Bacteria 6211
163 Ga0500608_004893 3300053122 Bacteria 5244
164 Ga0500614_027261 3300053123 Bacteria 1371
165 Ga0500642_0031348 3300053130 Bacteria 2221
166 Ga0500559_0001460 3300053136 Bacteria 13407
167 Ga0500590_003612 3300053148 Bacteria 7173
168 Ga0500622_0001231 3300053156 Bacteria 21000
169 Ga0500637_0036429 3300053178 Bacteria 2762
170 Ga0500625_007866 3300053729 Bacteria 4662
171 Ga0500596_000025 3300053735 Bacteria 20147
172 Ga0501084_0013859 3300054114 Bacteria 6673
173 2643847228 2643221566 Bacteria 3460379
174 2831865650 2831864461 Bacteria 6502356
175 2898911215 2898907183 Bacteria 4067722
176 2939663615 2939660829 Bacteria 3784848
177 8055040933 8055037949 Bacteria 3337834
178 Ga0157374_10025242
179 rootH2_10109906
180 rootL2_10004836
181 rootH1_10001528
182 rootH1_10060663
183 Ga0055524_1001321
184 Ga0055531_10002503
185 Ga0055531_10007291
186 Ga0065165_1000239
187 Ga0065165_1004139
188 Ga0070658_10006189
189 Ga0070670_100038173
190 Ga0070661_100139196
191 Ga0070692_10051226
192 Ga0070671_100305466
193 Ga0070714_100000032
194 Ga0070714_100076983
195 Ga0070714_100372594
196 Ga0070713_100006536
197 Ga0070713_100034248
198 Ga0068853_100040750
199 Ga0070696_100157292
200 Ga0068855_100093884
201 Ga0068855_100180827
202 Ga0068856_100023953
203 Ga0068864_100182577
204 Ga0068860_100028243
205 Ga0081455_10000157
206 Ga0070717_10000085
207 Ga0070717_10000554
208 Ga0075365_10005667
209 Ga0075365_10011998
210 Ga0075364_10004092
211 Ga0070712_100335444
212 Ga0075366_10060357
213 Ga0075366_10153015
214 Ga0097621_100237986
215 Ga0068871_100227160
216 Ga0075428_100255578
217 Ga0075431_100002588
218 Ga0075431_100210838
219 Ga0075431_100345125
220 Ga0068865_100178650
221 Ga0099823_1014292
222 Ga0105248_10072307
223 Ga0157319_1000031
224 Ga0157373_10206214
225 Ga0157371_10003784
226 Ga0157369_10001357
227 Ga0157378_10132077
228 Ga0157372_10183446
229 Ga0157372_10674307
230 Ga0163163_10734607
231 Ga0157379_10031450
232 Ga0157376_10017348
233 Ga0157376_10072472
234 Ga0163161_10050824
235 Ga0206353_11940513
236 Ga0209673_1019481
237 Ga0209673_1020628
238 Ga0209564_1000003
239 Ga0209256_1000637
240 Ga0209256_1008604
241 Ga0209051_1001568
242 Ga0209257_1003314
243 Ga0209257_1004846
244 Ga0207705_10005745
245 Ga0207693_10304062
246 Ga0207657_10087742
247 Ga0207649_10074932
248 Ga0207700_10046569
249 Ga0207664_10000059
250 Ga0207664_10031462
251 Ga0207709_10076683
252 Ga0207704_10179950
253 Ga0207665_10024239
254 Ga0207711_10042436
255 Ga0207661_10045013
256 Ga0207667_10025448
257 Ga0207639_10023897
258 Ga0207678_10350867
259 Ga0207641_10302355
260 Ga0207676_10552133
261 Ga0209389_1038439
262 Ga0207428_10003086
263 Ga0268264_10011984
264 Ga0265762_1006211
265 Ga0265330_10007804
266 Ga0265330_10014926
267 Ga0265330_10032581
268 Ga0265316_10000756
269 Ga0265316_10017891
270 Ga0265314_10060678
271 Ga0265342_10002773
272 Ga0265342_10003308
273 Ga0316578_10001185
274 Ga0307416_100088595
275 Ga0316574_0079420
276 Ga0373935_0158563
277 Ga0373937_0475100
278 Ga0316584_0028722
279 Ga0395898_0104128
280 Ga0395901_0235366
281 Ga0436365_1544003
282 Ga0439465_0017133
283 Ga0451837_0103136
284 Ga0451853_0768032
285 Ga0439454_002778
286 Ga0450890_002090
287 Ga0450896_000717
288 Ga0439446_0027652
289 Ga0439459_0000441
290 Ga0450916_002574
291 Ga0466959_0010178
292 Ga0495629_0010325
293 Ga0495609_0108313
294 Ga0495597_0002203
295 Ga0495622_0002843
296 Ga0495634_0182510
297 Ga0495611_0036796
298 Ga0495593_0107350
299 Ga0496104_0304249
300 Ga0496106_0149484
301 Ga0496110_0077031
302 Ga0496113_0110849
303 Ga0496114_0347196
304 Ga0496115_0037066
305 Ga0496124_0023701
306 Ga0496126_0069418
307 Ga0501032_0012613
308 Ga0501032_0078914
309 Ga0501033_0041541
310 Ga0501034_0079527
311 Ga0501036_0305888
312 Ga0501037_0031965
313 Ga0501038_0003604
314 Ga0501040_0001226
315 Ga0501042_0003583
316 Ga0501042_0003911
317 Ga0501042_0224411
318 Ga0501043_0014263
319 Ga0501047_0005730
320 Ga0501048_0000702
321 Ga0501079_0164073
322 Ga0501035_0012818
323 Ga0501035_0139640
324 nmdc:mga00v17_41437_c1
325 nmdc:mga0yw44_2225_c1
326 nmdc:mga05p37_70771_c1
327 nmdc:mga06r32_131825_c1
328 nmdc:mga06r32_159343_c1
329 nmdc:mga06r32_19235_c1
330 nmdc:mga06r32_246059_c1
331 nmdc:mga06r32_30629_c1
332 nmdc:mga08y16_17120_c1
333 nmdc:mga0n895_243551_c1
334 nmdc:mga0rr50_53_c1
335 nmdc:mga0sz30_7772_c1
336 Ga0500651_0004902
337 Ga0500566_0135222
338 Ga0500569_002051
339 Ga0500595_004535
340 Ga0500608_004893
341 Ga0500614_027261
342 Ga0500642_0031348
343 Ga0500559_0001460
344 Ga0500590_003612
345 Ga0500622_0001231
346 Ga0500637_0036429
347 Ga0500625_007866
348 Ga0500596_000025
349 Ga0501084_0013859
350 2643847228
351 2831865650
352 2898911215
353 2939663615
354 8055040933

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00294

PfkB

pfkB family carbohydrate kinase

23

330

0.93

PF08543

Phos_pyr_kin

Phosphomethylpyrimidine kinase

175

323

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1rk2-assembly2.cif.gz_C e. coli ribokinase complexed with ribose and adp, solved in space group p212121 0.9717 6 306
4xda-assembly1.cif.gz_A vibrio cholerae o395 ribokinase complexed with ribose, adp and sodium ion. 0.9666 6 306
5c41-assembly1.cif.gz_A crystal structure of human ribokinase in complex with amppcp in p21 spacegroup and with 4 protomers 0.9505 6 297
8cqx-assembly1.cif.gz_A ribokinase from t.sp mutant a92g 0.9469 8 302
6znx-assembly1.cif.gz_A ribokinase from thermus species 0.9423 8 304
ID Description Score Start End Superfamily
af_Q19133_1_311_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9398 1 300 3.40.1190.20
af_Q9VK96_1_314_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9378 5 302 3.40.1190.20
af_Q9H477_1_322_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9349 2 297 3.40.1190.20
af_O60116_1_317_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9327 6 305 3.40.1190.20
af_O77425_1_304_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9269 5 294 3.40.1190.20
ID Description Score Start End GO Terms
AF-A0A535KMA4-F1-model_v4 Ribokinase (EC 2.7.1.15) 0.971 6 192 GO:0004747
GO:0005524
GO:0005829
GO:0006014
GO:0046872
AF-A0A7L6EDJ9-F1-model_v4 deleted 0.9707 2 306
AF-A0A6P0WMR4-F1-model_v4 Ribokinase 0.9702 8 94 GO:0006796
GO:0016301
AF-A0A838DKN4-F1-model_v4 Ribokinase (RK) (EC 2.7.1.15) 0.9688 2 305 GO:0004747
GO:0005524
GO:0005829
GO:0019303
GO:0046872
AF-A0A6M4A9H9-F1-model_v4 Ribokinase (RK) (EC 2.7.1.15) 0.968 6 305 GO:0004747
GO:0005524
GO:0005829
GO:0019303
GO:0046872

Map