F270169

General Info

Members Datasets Scaffolds Average Seq Length
177 117 162 400

Family's Representative Sequence

Representative Sequence 3300009545|Ga0105237_10105389|Ga0105237_101053894
Length 415
Sequence MPLTDIAIRKIKPEAKPRKVSDGRGLYLLVSPTGSRLWRWKYRYGGKEKLLALGPYPDVSLSEARNACDEARRKLRNGIDPSAERQAAKQSKIEAEIAVDVAEQSTFGAIAREWMATQEVAEVTAMKTRWIIESFLLSDLGNRPIAEITPRDLLTVLRKIEATGKVETAKRARVKAGQVFRYAILEERGGIEIDPTASLRGALKTPKTKHHAAITDPVRMGELLRAIDGFVGQPATMFALKLAPLVFVRPGELRHAQWPEIDLEGAIWRIPAEKMKMKAAHLVPLSTQAVAILRELKPYTDHGTGNGYLFPSARTPFRPMSENTITAALRRLGYSGDEMTGHGFRSMAATRLNEMGWRADAIERQLAHAESNKVREAYTSAAQYLDERAKMMQAWADYLDKLKNQNSVVPMKRHA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
3 2643221571 Pseudomonas sp. Root569 Isolate Unclassified
4 2643221713 Pseudomonas sp. Root9 Isolate Unclassified
5 2721755607 Pseudomonas fluorescens Pt14 Isolate Rhizosphere
6 2738543009 Luteibacter sp. OK325 Isolate Unclassified
7 2738543020 Pseudomonas sp. GV054 Isolate Unclassified
8 2738543021 Pseudomonas sp. GV071 Isolate Unclassified
9 2806310737 Pseudomonas mosselii BS011 Isolate Unclassified
10 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
11 2834028612 Pseudomonas fluorescens 513 Isolate Unclassified
12 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
13 2919404418 Luteibacter sp. 3190 Isolate Unclassified
14 2939611941 Rhodanobacter soli 1757 Isolate Rhizosphere
15 2941471342 Luteibacter sp. 621 Isolate Unclassified
16 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
17 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
18 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
19 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
20 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
31 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
46 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
47 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
48 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
49 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
50 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
52 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
74 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
75 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
76 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
77 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
78 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
79 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
80 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
81 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
82 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
83 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
84 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
85 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
86 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
87 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
88 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
89 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
90 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
91 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
92 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
93 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
94 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
95 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
96 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
97 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
98 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
101 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
106 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
107 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
108 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
109 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
110 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
115 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
116 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
117 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.53
Metatranscriptomes 0
Isolates 8.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.34
Nodule 0
Rhizoplane 1.13
Rhizosphere 75.14
Stem 0
Stem Tuber 0
Unclassified 16.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2044832 2162886007 Bacteria 32315
2 JGI25162J39368_1000533 3300002737 Bacteria 28355
3 Ga0055542_1000107 3300003762 Bacteria 111897
4 Ga0065714_10082205 3300005288 Bacteria 2323
5 Ga0065704_10070290 3300005289 Bacteria 38533
6 Ga0070661_100000185 3300005344 Bacteria 51364
7 Ga0070659_100036042 3300005366 Bacteria 3855
8 Ga0070659_100080697 3300005366 Bacteria 2597
9 Ga0070667_100001921 3300005367 Bacteria 18440
10 Ga0070667_100200598 3300005367 Bacteria 1770
11 Ga0068853_100001581 3300005539 Bacteria 16604
12 Ga0070665_100000249 3300005548 Bacteria 89011
13 Ga0070665_100000385 3300005548 Bacteria 65243
14 Ga0068855_100003712 3300005563 Bacteria 18664
15 Ga0068855_100107622 3300005563 Bacteria 3203
16 Ga0068857_100161178 3300005577 Bacteria 2035
17 Ga0068856_100061183 3300005614 Bacteria 3719
18 Ga0068856_100290299 3300005614 Bacteria 1652
19 Ga0068851_10073511 3300005834 Bacteria 1773
20 Ga0081455_10000463 3300005937 Bacteria 52989
21 Ga0075370_10005726 3300006353 Bacteria 6206
22 Ga0105251_10042249 3300009011 Bacteria 2214
23 Ga0105240_10001237 3300009093 Bacteria 44349
24 Ga0105240_10003816 3300009093 Bacteria 23288
25 Ga0105240_10157041 3300009093 Bacteria 2704
26 Ga0105240_10242231 3300009093 Bacteria 2090
27 Ga0105240_10293275 3300009093 Bacteria 1864
28 Ga0105241_10001518 3300009174 Bacteria 17788
29 Ga0105241_10007242 3300009174 Bacteria 8166
30 Ga0105248_10012440 3300009177 Bacteria 9387
31 Ga0105248_10012801 3300009177 Bacteria 9253
32 Ga0105237_10000761 3300009545 Bacteria 44225
33 Ga0105237_10003150 3300009545 Bacteria 19851
34 Ga0105237_10012343 3300009545 Bacteria 9000
35 Ga0105237_10012813 3300009545 Bacteria 8819
36 Ga0105237_10016672 3300009545 Bacteria 7630
37 Ga0105237_10105389 3300009545 Bacteria 2811
38 Ga0105237_10177579 3300009545 Bacteria 2130
39 Ga0105238_10008476 3300009551 Bacteria 10291
40 Ga0105238_10035815 3300009551 Bacteria 5045
41 Ga0157373_10003796 3300013100 Bacteria 11423
42 Ga0157371_10021419 3300013102 Bacteria 4746
43 Ga0157370_10051578 3300013104 Bacteria 3930
44 Ga0157369_10002494 3300013105 Bacteria 22062
45 Ga0157369_10005721 3300013105 Bacteria 14441
46 Ga0157369_10062617 3300013105 Bacteria 4008
47 Ga0157374_10058303 3300013296 Bacteria 3608
48 Ga0163162_10035415 3300013306 Bacteria 4973
49 Ga0157375_10000345 3300013308 Bacteria 41921
50 Ga0182008_10015699 3300014497 Bacteria 3948
51 Ga0182008_10035277 3300014497 Bacteria 2506
52 Ga0182007_10002362 3300015262 Bacteria 9453
53 Ga0182007_10007000 3300015262 Bacteria 4784
54 Ga0182005_1000935 3300015265 Bacteria 12733
55 Ga0163161_10033335 3300017792 Bacteria 3680
56 Ga0163161_10157833 3300017792 Bacteria 1728
57 Ga0207427_104016 3300025231 Bacteria 2687
58 Ga0209437_100355 3300025233 Bacteria 52353
59 Ga0209437_109224 3300025233 Bacteria 1547
60 Ga0209258_103652 3300025242 Bacteria 3226
61 Ga0209026_1005300 3300025250 Bacteria 3506
62 Ga0209148_1000055 3300025254 Bacteria 367500
63 Ga0209051_1004116 3300025303 Bacteria 9115
64 Ga0207713_1000919 3300025735 Bacteria 26429
65 Ga0207647_10001574 3300025904 Bacteria 17506
66 Ga0207695_10000007 3300025913 Bacteria 1092551
67 Ga0207695_10000182 3300025913 Bacteria 184125
68 Ga0207695_10161571 3300025913 Bacteria 2171
69 Ga0207695_10174645 3300025913 Bacteria 2072
70 Ga0207671_10000563 3300025914 Bacteria 49819
71 Ga0207671_10010505 3300025914 Bacteria 7631
72 Ga0207671_10157556 3300025914 Bacteria 1757
73 Ga0207649_10000173 3300025920 Bacteria 52840
74 Ga0207694_10005522 3300025924 Bacteria 9700
75 Ga0207690_10064707 3300025932 Bacteria 2498
76 Ga0207711_10001088 3300025941 Bacteria 25937
77 Ga0207711_10035819 3300025941 Bacteria 4209
78 Ga0207667_10001289 3300025949 Bacteria 31377
79 Ga0207667_10168250 3300025949 Bacteria 2253
80 Ga0207658_10001248 3300025986 Bacteria 20111
81 Ga0207658_10074502 3300025986 Bacteria 2579
82 Ga0207639_10000197 3300026041 Bacteria 45460
83 Ga0207702_10045300 3300026078 Bacteria 3700
84 Ga0207702_10059183 3300026078 Bacteria 3263
85 Ga0207702_10167532 3300026078 Bacteria 2011
86 Ga0268266_10000006 3300028379 Bacteria 1410021
87 Ga0268266_10000338 3300028379 Bacteria 73458
88 Ga0307406_10000788 3300031901 Bacteria 17740
89 Ga0307412_10000210 3300031911 Bacteria 39741
90 Ga0395899_0001217 3300037312 Bacteria 22538
91 Ga0395899_0005195 3300037312 Bacteria 10127
92 Ga0395899_0028663 3300037312 Bacteria 4191
93 Ga0395900_0009319 3300037418 Bacteria 10065
94 Ga0395900_0093839 3300037418 Bacteria 3082
95 Ga0395900_0363474 3300037418 Bacteria 1418
96 Ga0395898_0007178 3300037466 Bacteria 11829
97 Ga0395901_0002284 3300038443 Bacteria 19543
98 Ga0395901_0007728 3300038443 Bacteria 10846
99 Ga0395901_0056477 3300038443 Bacteria 4084
100 Ga0400490_37188 3300038726 Bacteria 37985
101 Ga0439436_0000020 3300041404 Bacteria 66117
102 Ga0439445_0006589 3300042004 Bacteria 2672
103 Ga0466969_0005388 3300044656 Bacteria 6807
104 Ga0466966_0000227 3300044684 Bacteria 37516
105 Ga0466961_0010292 3300044693 Bacteria 5960
106 Ga0466964_0001159 3300044706 Bacteria 8912
107 Ga0466971_0000395 3300044719 Bacteria 16906
108 Ga0466970_0009091 3300044765 Bacteria 5014
109 Ga0466959_0078515 3300045049 Bacteria 2380
110 Ga0495617_000374 3300046452 Bacteria 24806
111 Ga0495617_000623 3300046452 Bacteria 17765
112 Ga0495617_004990 3300046452 Bacteria 4768
113 Ga0495617_008529 3300046452 Bacteria 3529
114 Ga0495627_000256 3300046453 Bacteria 54510
115 Ga0495638_0026601 3300046460 Bacteria 3749
116 Ga0495650_0020152 3300046471 Bacteria 3259
117 Ga0495585_0000623 3300046492 Bacteria 32946
118 Ga0495606_0000385 3300046507 Bacteria 74818
119 Ga0495606_0021106 3300046507 Bacteria 4776
120 Ga0495610_0000220 3300046512 Bacteria 61190
121 Ga0495610_0003630 3300046512 Bacteria 11885
122 Ga0495620_0000258 3300046515 Bacteria 39294
123 Ga0495643_0010021 3300046522 Bacteria 5849
124 Ga0495668_0019872 3300046616 Bacteria 3866
125 Ga0495670_0003899 3300046691 Bacteria 7328
126 Ga0495589_0000327 3300046794 Bacteria 37317
127 Ga0495589_0000959 3300046794 Bacteria 17602
128 Ga0495660_0000097 3300046810 Bacteria 94152
129 Ga0495660_0000395 3300046810 Bacteria 37740
130 Ga0495683_0007739 3300047323 Bacteria 5770
131 Ga0495673_0000001 3300047469 Bacteria 1630730
132 Ga0495681_0000065 3300047470 Bacteria 97979
133 Ga0495686_0000019 3300047472 Bacteria 434054
134 Ga0495686_0000175 3300047472 Bacteria 122163
135 Ga0495686_0152415 3300047472 Bacteria 1356
136 Ga0495626_0004272 3300048091 Bacteria 8815
137 Ga0496104_0281056 3300048907 Bacteria 1578
138 Ga0496115_0200155 3300048918 Bacteria 1650
139 Ga0496117_0003821 3300048920 Bacteria 17129
140 Ga0496117_0016585 3300048920 Bacteria 6206
141 Ga0496118_0001239 3300048921 Bacteria 39191
142 Ga0496118_0002442 3300048921 Bacteria 25011
143 Ga0496121_0000129 3300048924 Bacteria 168148
144 Ga0496121_0002130 3300048924 Bacteria 31106
145 Ga0496121_0005923 3300048924 Bacteria 15463
146 Ga0496121_0006314 3300048924 Bacteria 14804
147 Ga0496121_0008944 3300048924 Bacteria 11623
148 Ga0496123_0046615 3300048926 Bacteria 2938
149 Ga0496124_0015378 3300048927 Bacteria 7337
150 Ga0496124_0148837 3300048927 Bacteria 1839
151 Ga0496125_0001253 3300048928 Bacteria 37864
152 Ga0496125_0034698 3300048928 Bacteria 4440
153 Ga0496126_0098388 3300048929 Bacteria 2563
154 Ga0496126_0140182 3300048929 Bacteria 2082
155 Ga0501032_0070978 3300049569 Bacteria 2322
156 Ga0501070_0133843 3300049586 Bacteria 2047
157 Ga0501080_0003708 3300049742 Bacteria 13476
158 nmdc:mga0k408_132652_c1 3300050493 Bacteria 1479
159 nmdc:mga07m45_5958_c1 3300050496 Bacteria 6122
160 Ga0500643_000002 3300053087 Bacteria 1277657
161 Ga0500594_0041033 3300053118 Bacteria 1266
162 Ga0466962_0008890 3300061719 Bacteria 4815

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042004 Ga0439445_0006589 Ga0439445_0006589_1071_2081 330
2 3300025913 Ga0207695_10000182 Ga0207695_1000018280 344
3 iso_pu_bacteria 2834028612 2834033311 350
4 3300009545 Ga0105237_10003150 Ga0105237_100031503 352
5 3300041404 Ga0439436_0000020 Ga0439436_0000020_45826_47052 356
6 3300046452 Ga0495617_000374 Ga0495617_000374_9630_10856 358
7 3300046515 Ga0495620_0000258 Ga0495620_0000258_7865_9091 358
8 3300048920 Ga0496117_0003821 Ga0496117_0003821_8793_9899 363
9 3300048921 Ga0496118_0002442 Ga0496118_0002442_5936_7042 363
10 3300048926 Ga0496123_0046615 Ga0496123_0046615_1825_2928 367
11 3300037418 Ga0395900_0363474 Ga0395900_0363474_25_1182 370
12 3300046810 Ga0495660_0000395 Ga0495660_0000395_26857_28098 370
13 3300047469 Ga0495673_0000001 Ga0495673_0000001_1619847_1621088 370
14 3300046452 Ga0495617_004990 Ga0495617_004990_3232_4458 371
15 3300046452 Ga0495617_008529 Ga0495617_008529_311_1537 371
16 3300046492 Ga0495585_0000623 Ga0495585_0000623_21098_22324 371
17 3300046512 Ga0495610_0003630 Ga0495610_0003630_7648_8874 371
18 3300046691 Ga0495670_0003899 Ga0495670_0003899_3346_4572 371
19 3300046794 Ga0495589_0000327 Ga0495589_0000327_914_2140 371
20 3300046810 Ga0495660_0000097 Ga0495660_0000097_84957_86183 371
21 3300047472 Ga0495686_0000175 Ga0495686_0000175_99156_100382 371
22 3300048924 Ga0496121_0006314 Ga0496121_0006314_5996_7222 371
23 3300048929 Ga0496126_0140182 Ga0496126_0140182_426_1625 371
24 3300053087 Ga0500643_000002 Ga0500643_000002_975359_976585 371
25 3300015265 Ga0182005_1000935 Ga0182005_100093516 372
26 3300017792 Ga0163161_10157833 Ga0163161_101578332 372
27 3300046507 Ga0495606_0000385 Ga0495606_0000385_440_1666 372
28 3300046616 Ga0495668_0019872 Ga0495668_0019872_1595_2821 372
29 3300047323 Ga0495683_0007739 Ga0495683_0007739_484_1710 372
30 3300048928 Ga0496125_0001253 Ga0496125_0001253_2654_3775 372
31 3300048924 Ga0496121_0008944 Ga0496121_0008944_737_1978 373
32 3300014497 Ga0182008_10015699 Ga0182008_100156992 377
33 3300015262 Ga0182007_10002362 Ga0182007_100023622 378
34 3300037312 Ga0395899_0028663 Ga0395899_0028663_2699_3922 378
35 3300037418 Ga0395900_0093839 Ga0395900_0093839_274_1497 378
36 3300038443 Ga0395901_0056477 Ga0395901_0056477_302_1525 378
37 3300009093 Ga0105240_10293275 Ga0105240_102932753 383
38 3300025233 Ga0209437_109224 Ga0209437_1092241 383
39 3300025250 Ga0209026_1005300 Ga0209026_10053005 383
40 3300025913 Ga0207695_10174645 Ga0207695_101746452 383
41 3300026078 Ga0207702_10059183 Ga0207702_100591834 383
42 3300037312 Ga0395899_0005195 Ga0395899_0005195_8585_9817 383
43 3300037418 Ga0395900_0009319 Ga0395900_0009319_311_1543 383
44 3300037466 Ga0395898_0007178 Ga0395898_0007178_10287_11519 383
45 3300038443 Ga0395901_0007728 Ga0395901_0007728_9304_10536 383
46 3300037312 Ga0395899_0001217 Ga0395899_0001217_2915_4078 385
47 3300006353 Ga0075370_10005726 Ga0075370_100057262 386
48 3300009551 Ga0105238_10008476 Ga0105238_1000847615 386
49 3300025924 Ga0207694_10005522 Ga0207694_1000552215 386
50 3300038443 Ga0395901_0002284 Ga0395901_0002284_883_2100 386
51 3300050493 nmdc:mga0k408_132652_c1 nmdc:mga0k408_132652_c1_98_1297 386
52 3300050496 nmdc:mga07m45_5958_c1 nmdc:mga07m45_5958_c1_3710_4909 386
53 3300038726 Ga0400490_37188 Ga0400490_37188_13224_14450 388
54 3300053118 Ga0500594_0041033 Ga0500594_0041033_81_1247 388
55 iso_pu_bacteria 2643221571 2643869622 388
56 iso_pu_bacteria 2643221713 2644623607 388
57 iso_pu_bacteria 2721755607 2723250773 388
58 iso_pu_bacteria 2806310737 2807406512 388
59 3300005548 Ga0070665_100000249 Ga0070665_10000024939 391
60 3300009093 Ga0105240_10157041 Ga0105240_101570412 391
61 3300013102 Ga0157371_10021419 Ga0157371_100214192 391
62 3300013104 Ga0157370_10051578 Ga0157370_100515782 391
63 3300028379 Ga0268266_10000006 Ga0268266_10000006197 391
64 3300044656 Ga0466969_0005388 Ga0466969_0005388_5347_6543 391
65 3300044684 Ga0466966_0000227 Ga0466966_0000227_29344_30540 391
66 3300044693 Ga0466961_0010292 Ga0466961_0010292_1763_2959 391
67 3300044706 Ga0466964_0001159 Ga0466964_0001159_4437_5633 391
68 3300044719 Ga0466971_0000395 Ga0466971_0000395_13305_14501 391
69 3300044765 Ga0466970_0009091 Ga0466970_0009091_2895_4091 391
70 3300045049 Ga0466959_0078515 Ga0466959_0078515_822_2018 391
71 3300047472 Ga0495686_0000019 Ga0495686_0000019_264737_265963 391
72 3300048920 Ga0496117_0016585 Ga0496117_0016585_4298_5524 391
73 3300048921 Ga0496118_0001239 Ga0496118_0001239_36933_38159 391
74 3300061719 Ga0466962_0008890 Ga0466962_0008890_1344_2540 391
75 iso_pu_bacteria 2738543020 2739289038 391
76 iso_pu_bacteria 2738543021 2739294350 391
77 3300005288 Ga0065714_10082205 Ga0065714_100822053 392
78 3300005344 Ga0070661_100000185 Ga0070661_10000018512 392
79 3300005563 Ga0068855_100003712 Ga0068855_10000371215 392
80 3300005614 Ga0068856_100061183 Ga0068856_1000611831 392
81 3300009093 Ga0105240_10001237 Ga0105240_1000123739 392
82 3300009174 Ga0105241_10007242 Ga0105241_100072427 392
83 3300009545 Ga0105237_10000761 Ga0105237_100007612 392
84 3300013100 Ga0157373_10003796 Ga0157373_100037968 392
85 3300013105 Ga0157369_10005721 Ga0157369_100057218 392
86 3300025914 Ga0207671_10000563 Ga0207671_100005632 392
87 3300025920 Ga0207649_10000173 Ga0207649_1000017343 392
88 3300025949 Ga0207667_10001289 Ga0207667_1000128912 392
89 3300026078 Ga0207702_10045300 Ga0207702_100453001 392
90 3300031901 Ga0307406_10000788 Ga0307406_1000078815 392
91 3300048091 Ga0495626_0004272 Ga0495626_0004272_7594_8799 392
92 3300005937 Ga0081455_10000463 Ga0081455_1000046314 393
93 3300005563 Ga0068855_100107622 Ga0068855_1001076223 394
94 3300013296 Ga0157374_10058303 Ga0157374_100583034 394
95 3300048907 Ga0496104_0281056 Ga0496104_0281056_68_1285 394
96 3300005539 Ga0068853_100001581 Ga0068853_1000015812 395
97 3300015262 Ga0182007_10007000 Ga0182007_100070002 395
98 3300026041 Ga0207639_10000197 Ga0207639_1000019757 395
99 3300046507 Ga0495606_0021106 Ga0495606_0021106_1580_2797 395
100 3300048918 Ga0496115_0200155 Ga0496115_0200155_214_1431 395
101 3300049586 Ga0501070_0133843 Ga0501070_0133843_509_1720 396
102 iso_pu_bacteria 2643221562 2643830136 397
103 iso_pu_bacteria 2738543009 2739227647 397
104 3300009093 Ga0105240_10242231 Ga0105240_102422312 398
105 3300009545 Ga0105237_10016672 Ga0105237_100166722 398
106 3300025913 Ga0207695_10161571 Ga0207695_101615712 398
107 3300025914 Ga0207671_10010505 Ga0207671_100105052 398
108 iso_pu_bacteria 2919404418 2919405214 398
109 iso_pu_bacteria 2941471342 2941473470 398
110 3300013308 Ga0157375_10000345 Ga0157375_1000034537 399
111 3300005367 Ga0070667_100001921 Ga0070667_10000192127 400
112 3300005614 Ga0068856_100290299 Ga0068856_1002902992 400
113 3300025986 Ga0207658_10001248 Ga0207658_1000124827 400
114 3300026078 Ga0207702_10167532 Ga0207702_101675323 400
115 3300046512 Ga0495610_0000220 Ga0495610_0000220_1668_2870 400
116 3300046522 Ga0495643_0010021 Ga0495643_0010021_4285_5487 400
117 iso_pu_bacteria 2939611941 2939614492 400
118 3300009545 Ga0105237_10105389 Ga0105237_101053894 401
119 3300013105 Ga0157369_10002494 Ga0157369_1000249418 401
120 3300025914 Ga0207671_10157556 Ga0207671_101575561 401
121 3300047472 Ga0495686_0152415 Ga0495686_0152415_83_1303 401
122 3300014497 Ga0182008_10035277 Ga0182008_100352772 402
123 3300025303 Ga0209051_1004116 Ga0209051_10041168 402
124 3300046452 Ga0495617_000623 Ga0495617_000623_604_1830 402
125 3300046794 Ga0495589_0000959 Ga0495589_0000959_15936_17162 402
126 3300048924 Ga0496121_0000129 Ga0496121_0000129_96504_97730 402
127 3300049742 Ga0501080_0003708 Ga0501080_0003708_6758_8053 402
128 3300002737 JGI25162J39368_1000533 JGI25162J39368_100053322 403
129 3300003762 Ga0055542_1000107 Ga0055542_1000107103 403
130 3300005548 Ga0070665_100000385 Ga0070665_1000003853 403
131 3300009093 Ga0105240_10003816 Ga0105240_100038162 403
132 3300025231 Ga0207427_104016 Ga0207427_1040162 403
133 3300025233 Ga0209437_100355 Ga0209437_1003552 403
134 3300025242 Ga0209258_103652 Ga0209258_1036522 403
135 3300025254 Ga0209148_1000055 Ga0209148_10000552 403
136 3300025913 Ga0207695_10000007 Ga0207695_10000007959 403
137 3300028379 Ga0268266_10000338 Ga0268266_1000033866 403
138 3300048924 Ga0496121_0005923 Ga0496121_0005923_13726_14958 403
139 3300005366 Ga0070659_100036042 Ga0070659_1000360427 405
140 3300009551 Ga0105238_10035815 Ga0105238_100358159 405
141 3300025932 Ga0207690_10064707 Ga0207690_100647072 405
142 3300049569 Ga0501032_0070978 Ga0501032_0070978_114_1346 405
143 iso_pu_bacteria 2818991466 2819713739 406
144 iso_pu_bacteria 2879163058 2879165741 406
145 2162886007 SwRhRL2b_contig_2044832 SwRhRL2b_0566.00003680 410
146 3300005289 Ga0065704_10070290 Ga0065704_1007029032 410
147 3300005366 Ga0070659_100080697 Ga0070659_1000806971 410
148 3300005367 Ga0070667_100200598 Ga0070667_1002005981 410
149 3300005577 Ga0068857_100161178 Ga0068857_1001611782 410
150 3300005834 Ga0068851_10073511 Ga0068851_100735111 410
151 3300009011 Ga0105251_10042249 Ga0105251_100422492 410
152 3300009174 Ga0105241_10001518 Ga0105241_100015181 410
153 3300009177 Ga0105248_10012440 Ga0105248_100124406 410
154 3300009177 Ga0105248_10012801 Ga0105248_100128013 410
155 3300009545 Ga0105237_10012343 Ga0105237_100123435 410
156 3300009545 Ga0105237_10012813 Ga0105237_100128137 410
157 3300009545 Ga0105237_10177579 Ga0105237_101775792 410
158 3300013105 Ga0157369_10062617 Ga0157369_100626173 410
159 3300013306 Ga0163162_10035415 Ga0163162_100354153 410
160 3300017792 Ga0163161_10033335 Ga0163161_100333354 410
161 3300025735 Ga0207713_1000919 Ga0207713_100091927 410
162 3300025904 Ga0207647_10001574 Ga0207647_1000157411 410
163 3300025941 Ga0207711_10001088 Ga0207711_100010883 410
164 3300025941 Ga0207711_10035819 Ga0207711_100358194 410
165 3300025949 Ga0207667_10168250 Ga0207667_101682502 410
166 3300025986 Ga0207658_10074502 Ga0207658_100745022 410
167 3300031911 Ga0307412_10000210 Ga0307412_1000021035 410
168 3300046453 Ga0495627_000256 Ga0495627_000256_184_1416 410
169 3300046460 Ga0495638_0026601 Ga0495638_0026601_1213_2445 410
170 3300046471 Ga0495650_0020152 Ga0495650_0020152_766_1998 410
171 3300047470 Ga0495681_0000065 Ga0495681_0000065_689_1921 410
172 3300048924 Ga0496121_0002130 Ga0496121_0002130_21027_22259 410
173 3300048927 Ga0496124_0015378 Ga0496124_0015378_5764_6996 410
174 3300048927 Ga0496124_0148837 Ga0496124_0148837_323_1555 410
175 3300048928 Ga0496125_0034698 Ga0496125_0034698_1289_2521 410
176 3300048929 Ga0496126_0098388 Ga0496126_0098388_763_1995 410
177 iso_pu_bacteria 2879163058 2879164926 410

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22022

Phage_int_M

Phage integrase central domain

107

202

0.95

PF13356

Arm-DNA-bind_3

Arm DNA-binding domain

3

88

0.94

PF00589

Phage_integrase

Phage integrase family

219

384

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9851 2 76
3ju0-assembly1.cif.gz_A structure of the arm-type binding domain of hai7 integrase 0.9798 2 83
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9774 2 76
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9467 2 76
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9405 2 76
ID Description Score Start End Superfamily
3rmpC00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9851 2 76 3.30.160.390
3ju0A00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9798 2 83 3.30.160.390
af_P37326_1_84_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9725 3 84 3.30.160.390
af_P39347_1_63_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9724 28 87 3.30.160.390
af_P76542_5_101_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9696 3 94 3.30.160.390
ID Description Score Start End GO Terms
AF-A0A3L6M495-F1-model_v4 DUF4102 domain-containing protein 1.001 1 64 GO:0015074
AF-A0A2N2SR13-F1-model_v4 Integrase 0.9982 1 65 GO:0015074
AF-A0A239J020-F1-model_v4 Integrase DNA-binding domain-containing protein 0.9976 1 84 GO:0015074
AF-A0A0B6FL80-F1-model_v4 deleted 0.9962 1 62
AF-A0A398PM93-F1-model_v4 deleted 0.9956 1 82

Feature Viewer

pLDDT pTM Quality
86.3 0.57 Medium
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Predicted Structure (AlphaFold2)

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