F269236

General Info

Members Datasets Scaffolds Average Seq Length
176 132 136 1021

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2929206907|2929207523
Length 1169
Sequence HLQRRDWENLDVLERDRLPARASFIPYGEEKMALTYAEERSDRTLLLNGTWAFRYTNSPEEAPAGFYEPEFDAAAWDRLPVPSCWQLHGYGAPHYTDLYYPFPVDPPRVPAANPTGSYRREFTLPAGWTDKDVVIRFHGVDSACNVWLNGEYVGYSEGSRLTAEFDLSPFIRSGRNVLAVQVYQWSAGSYLEDQDMWWLSGIFRDVVLVARPKLHLQNVRVHAALDEACRHGHLSVKVTVAKAAERAAHSGGQDGVETGEPTGTLTGSQHGGQGSPQTGALSAADTASRPFTLAWKLQDHEGSLIVSGEESGIANNGESDGTVENGLERSLTIEAEINEPRKWSAETPYLYDLIVTLLDEEGKVLETTALKTGFRRIEVKGGLMLVNGKAIRLRGVNRHDHHPDTGRTVTPETMEKDIRMMKQHNINAVRTAHYPNDPRFYDLCDRYGLYVMDETDLETHGFELIGDANRLSGDPAWEHAYVDRMRRMVMRDENHPSIIMWSLGNESGFGCNHEAMYKWCRSYDSTRLVHYEGDREGKACDVFSTMYSSPEKMRGFGEMKELDKPHILCEYAHAMGNGPGGLQHYEELFRTYPRLQGGFVWEWIDHGLRRKKADGREYFAYGGDYGDQPNNGNFCIDGLVTPDRTPSPGLLEYKKTIEPISVEILGGEPGKNQGSADLIIRNHYDFISLQNFRCTWKLEADGRLVGGGPAELPDLAAGEEGTLRIALPVLPADEEGSAEYWLTVRIVLASPAVWAEEGHEIAWAQFPLHAVSEEKAGNAKAPGEPERDASGAVLNSAVVSSAGASANHAAAKGGPARTSAGARETAGEAEPAALSEAGASGMAAASPQETPAQQDAARTADADAIRVEEADRELTLTGADFTLVFDRGRGRIASWRHAGNPVIAEGGGPRLALWRAPIDNDMYVVADWRKACVHMAADDVRGSGWERLADGSVRVTVSIRTAPPVYAWGFACTWVYIVRPAGTVDLSVQGDPDGTPPDMLPRIGLRMELPGSMDRVTWYGLGPGESYPDSREAARMGLYDAAVDDLRFPYVKPQESGNRSDVRWAYLRGVQGSGLMAAGQPVFDFGASRYTPEDLEEASYECDLIPRDFVTLHLDYKQNGLGSNSCGPKQLPPHVLEPKAFQFAVRLKPLSGDAHPEQTAAALRSGRIS

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2508501071 Serratia proteamaculans S4 Isolate Rhizosphere
3 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
4 2602042047 Enterobacter sp. NFIX59 Isolate Rhizoplane
5 2602042109 Klebsiella aerogenes NFIX39 Isolate Rhizoplane
6 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
7 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
8 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
9 2667528173 Rahnella sp. NFIX50 Isolate Rhizoplane
10 2671180694 Paenibacillus sp. A3 Isolate Unclassified
11 2738543010 Bacillus sp. YR335 Isolate Unclassified
12 2772190666 Serratia surfactantfaciens YD25 Isolate Unclassified
13 2775506706 Enterobacter asburiae 1216 Isolate Unclassified
14 2806310673 Serratia quinivorans NCTC 13189 Isolate Rhizosphere
15 2818991459 Paenibacillus sp. 597 Isolate Unclassified
16 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
17 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
18 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
19 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
20 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
21 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
22 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
23 2904474040 Rahnella aquatilis 4485 Isolate Rhizosphere
24 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
25 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
26 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
27 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
28 2919108558 Klebsiella sp. 1400 Isolate Rhizosphere
29 2919150387 Rahnella aceris 1817 Isolate Unclassified
30 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
31 2927143783 Rahnella sp. 2050 Isolate Unclassified
32 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
33 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
34 2937967321 Serratia sp. YC16 Isolate Unclassified
35 2939573065 Citrobacter sp. 506 Isolate Rhizosphere
36 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
37 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
38 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
39 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
40 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
41 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
42 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
43 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
44 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
45 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
46 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
47 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
48 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
49 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
50 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
51 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
52 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
53 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
54 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
55 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
56 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
57 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
58 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
59 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
60 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
61 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
62 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
63 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
64 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
65 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
66 3300015679 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.4_F08 Metagenome Unclassified
67 3300015680 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.2_H03 Metagenome Rhizosphere
68 3300015685 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Metagenome Unclassified
69 3300015687 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 002.1_G08 Metagenome Rhizosphere
70 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
71 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
72 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
77 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
78 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
79 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
80 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
82 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
83 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
84 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
85 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
86 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
87 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
88 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
89 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
97 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
98 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
99 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
100 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
101 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
102 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
103 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
104 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
105 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
106 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
107 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
108 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
109 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
110 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
111 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
112 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
113 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
114 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
115 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
116 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
117 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
118 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
121 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
122 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
123 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
124 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
125 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
127 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
128 640753048 Serratia proteamaculans 568 Isolate Endosphere
129 8004592986 Serratia sp. S119 Isolate Unclassified
130 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
131 8057582654 Bacillus arachidis YX15 Isolate Rhizosphere
132 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.27
Metatranscriptomes 0
Isolates 22.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 26.7
Nodule 2.84
Rhizoplane 3.41
Rhizosphere 42.05
Stem 0
Stem Tuber 0
Unclassified 25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_636082 2162886007 Bacteria 6658
2 JGI25162J39368_1000007 3300002737 Bacteria 403947
3 JGI25163J39215_1000018 3300002771 Bacteria 77024
4 JGI25164J39214_1000010 3300002772 Bacteria 288863
5 JGI25164J39214_1000013 3300002772 Bacteria 253470
6 JGI25164J39214_1000016 3300002772 Bacteria 202035
7 JGI25152J39213_1000392 3300002773 Bacteria 26675
8 JGI25150J39212_1000258 3300002774 Bacteria 28088
9 JGI25151J46595_10005723 3300003187 Bacteria 6373
10 rootH2_10077236 3300003320 Bacteria 4565
11 Ga0055538_1000006 3300003751 Bacteria 403947
12 Ga0055539_1000010 3300003752 Bacteria 403947
13 Ga0055533_1000013 3300003756 Bacteria 403947
14 Ga0055525_1000015 3300003759 Bacteria 403947
15 Ga0055526_1000149 3300003771 Bacteria 61682
16 Ga0055526_1000678 3300003771 Bacteria 26100
17 Ga0055526_1001062 3300003771 Bacteria 20079
18 Ga0055537_1000100 3300003773 Bacteria 64929
19 Ga0055524_1001307 3300003775 Bacteria 14568
20 Ga0055534_1000085 3300003784 Bacteria 72934
21 Ga0055528_1000318 3300003790 Bacteria 40528
22 Ga0055541_1000007 3300003841 Bacteria 403947
23 Ga0058692_1000392 3300003856 Bacteria 20979
24 Ga0065704_10000029 3300005289 Bacteria 10858
25 Ga0068855_100012980 3300005563 Bacteria 10052
26 Ga0075364_10002199 3300006051 Bacteria 10935
27 Ga0079104_1000278 3300006946 Bacteria 66051
28 Ga0079104_1001799 3300006946 Bacteria 13283
29 Ga0105251_10000369 3300009011 Bacteria 44159
30 Ga0105251_10000738 3300009011 Bacteria 29954
31 Ga0105251_10005447 3300009011 Bacteria 8311
32 Ga0105251_10010774 3300009011 Bacteria 5272
33 Ga0105244_10000107 3300009036 Bacteria 86376
34 Ga0105244_10000153 3300009036 Bacteria 72636
35 Ga0105244_10003382 3300009036 Bacteria 11418
36 Ga0105244_10011605 3300009036 Bacteria 5268
37 Ga0105250_10000198 3300009092 Bacteria 51267
38 Ga0105250_10000293 3300009092 Bacteria 39647
39 Ga0105250_10001788 3300009092 Bacteria 11264
40 Ga0105250_10003891 3300009092 Bacteria 6993
41 Ga0105243_10003041 3300009148 Bacteria 13824
42 Ga0105241_10000002 3300009174 Bacteria 869480
43 Ga0105241_10000490 3300009174 Bacteria 29892
44 Ga0157371_10002879 3300013102 Bacteria 16087
45 Ga0182008_10001293 3300014497 Bacteria 17100
46 Ga0183366_1001 3300015679 Bacteria 2743932
47 Ga0183370_1001 3300015680 Bacteria 2743932
48 Ga0183369_1001 3300015685 Bacteria 2743932
49 Ga0183368_1001 3300015687 Bacteria 2743932
50 Ga0183367_1011 3300015688 Bacteria 397353
51 Ga0209760_100024 3300025207 Bacteria 158664
52 Ga0209784_100022 3300025224 Bacteria 403999
53 Ga0209566_100021 3300025225 Bacteria 403999
54 Ga0209566_100069 3300025225 Bacteria 177387
55 Ga0209674_100038 3300025226 Bacteria 403999
56 Ga0209563_100042 3300025230 Bacteria 403999
57 Ga0207427_100027 3300025231 Bacteria 403999
58 Ga0209437_100049 3300025233 Bacteria 403999
59 Ga0207425_1000013 3300025245 Bacteria 497384
60 Ga0209646_1000303 3300025246 Bacteria 39841
61 Ga0209677_100025 3300025253 Bacteria 403999
62 Ga0209129_1000152 3300025258 Bacteria 112977
63 Ga0209565_1000082 3300025263 Bacteria 154452
64 Ga0209565_1001977 3300025263 Bacteria 8013
65 Ga0209673_1000422 3300025273 Bacteria 73685
66 Ga0209675_1000176 3300025291 Bacteria 73644
67 Ga0209025_1000913 3300025294 Bacteria 45495
68 Ga0209025_1001967 3300025294 Bacteria 23649
69 Ga0209025_1013300 3300025294 Bacteria 5187
70 Ga0209564_1000010 3300025295 Bacteria 885399
71 Ga0209564_1000438 3300025295 Bacteria 71794
72 Ga0209758_1000031 3300025297 Bacteria 497252
73 Ga0209256_1000323 3300025299 Bacteria 82313
74 Ga0209256_1001135 3300025299 Bacteria 30354
75 Ga0207696_1000102 3300025711 Bacteria 167962
76 Ga0207696_1000726 3300025711 Bacteria 22118
77 Ga0207655_1000065 3300025728 Bacteria 252767
78 Ga0207655_1000124 3300025728 Bacteria 153097
79 Ga0207655_1000831 3300025728 Bacteria 33294
80 Ga0207713_1000069 3300025735 Bacteria 191229
81 Ga0207713_1000433 3300025735 Bacteria 44170
82 Ga0207713_1003447 3300025735 Bacteria 10767
83 Ga0207713_1005879 3300025735 Bacteria 7578
84 Ga0207654_10000005 3300025911 Bacteria 869492
85 Ga0207695_10010930 3300025913 Bacteria 11042
86 Ga0207671_10000594 3300025914 Bacteria 48267
87 Ga0207709_10001887 3300025935 Bacteria 13849
88 Ga0209281_1000027 3300027111 Bacteria 463409
89 Ga0209281_1000385 3300027111 Bacteria 69916
90 Ga0209371_1000001 3300027312 Bacteria 2771503
91 Ga0268256_1000001 3300030500 Bacteria 2771065
92 Ga0265316_10024335 3300031344 Bacteria 5077
93 Ga0373927_0008615 3300035695 Bacteria 6855
94 Ga0373925_0000523 3300037068 Bacteria 38298
95 Ga0373925_0001790 3300037068 Bacteria 17906
96 Ga0439452_000235 3300042010 Bacteria 38565
97 Ga0495650_0000039 3300046471 Bacteria 375501
98 Ga0495654_0001923 3300046530 Bacteria 13788
99 Ga0495597_0003810 3300046542 Bacteria 8576
100 Ga0495625_0001931 3300046660 Bacteria 23429
101 Ga0495589_0000004 3300046794 Bacteria 439891
102 Ga0495660_0000023 3300046810 Bacteria 272605
103 Ga0495672_0000076 3300047320 Bacteria 174487
104 Ga0495679_000005 3300047446 Bacteria 455007
105 Ga0495673_0000055 3300047469 Bacteria 247894
106 Ga0496104_0000207 3300048907 Bacteria 52463
107 Ga0496104_0000219 3300048907 Bacteria 50064
108 Ga0496105_0001430 3300048908 Bacteria 16795
109 Ga0496116_0000112 3300048919 Bacteria 181946
110 Ga0496116_0004814 3300048919 Bacteria 12735
111 Ga0496117_0008452 3300048920 Bacteria 9773
112 Ga0496118_0005071 3300048921 Bacteria 15163
113 Ga0496119_0004433 3300048922 Bacteria 13980
114 Ga0496120_0000444 3300048923 Bacteria 65596
115 Ga0496120_0001023 3300048923 Bacteria 37372
116 Ga0496120_0001743 3300048923 Bacteria 24718
117 Ga0496120_0008666 3300048923 Bacteria 7337
118 Ga0496121_0001163 3300048924 Bacteria 46170
119 Ga0496121_0013309 3300048924 Bacteria 8856
120 Ga0496122_0000067 3300048925 Bacteria 231365
121 Ga0496123_0000056 3300048926 Bacteria 231365
122 Ga0496124_0000021 3300048927 Bacteria 432123
123 Ga0496124_0000618 3300048927 Bacteria 59667
124 Ga0496124_0000660 3300048927 Bacteria 56952
125 Ga0496125_0000183 3300048928 Bacteria 137652
126 Ga0496125_0000257 3300048928 Bacteria 109544
127 Ga0496125_0001970 3300048928 Bacteria 27921
128 Ga0496125_0008483 3300048928 Bacteria 10752
129 Ga0496125_0010994 3300048928 Bacteria 9084
130 Ga0496126_0003520 3300048929 Bacteria 19701
131 Ga0496126_0005700 3300048929 Bacteria 14110
132 Ga0496126_0006818 3300048929 Bacteria 12671
133 Ga0501042_0000963 3300049578 Bacteria 16249
134 Ga0501083_0000004 3300049744 Bacteria 207886
135 Ga0500635_0000073 3300053080 Bacteria 65023
136 Ga0500635_0002580 3300053080 Bacteria 4506

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300015688 Ga0183367_1011 Ga0183367_101158 887
2 3300037068 Ga0373925_0001790 Ga0373925_0001790_4273_7239 898
3 3300049578 Ga0501042_0000963 Ga0501042_0000963_10494_13364 911
4 3300049744 Ga0501083_0000004 Ga0501083_0000004_174811_177681 911
5 3300048921 Ga0496118_0005071 Ga0496118_0005071_10506_13388 913
6 3300053080 Ga0500635_0000073 Ga0500635_0000073_26056_28980 914
7 3300005563 Ga0068855_100012980 Ga0068855_1000129803 923
8 3300009174 Ga0105241_10000490 Ga0105241_100004905 923
9 3300025913 Ga0207695_10010930 Ga0207695_100109303 923
10 3300025914 Ga0207671_10000594 Ga0207671_1000059410 923
11 3300003320 rootH2_10077236 rootH2_100772362 949
12 3300053080 Ga0500635_0002580 Ga0500635_0002580_1312_4389 958
13 3300031344 Ga0265316_10024335 Ga0265316_100243352 966
14 3300025246 Ga0209646_1000303 Ga0209646_100030327 970
15 3300025263 Ga0209565_1001977 Ga0209565_10019773 972
16 3300003771 Ga0055526_1000149 Ga0055526_100014934 975
17 3300025295 Ga0209564_1000010 Ga0209564_1000010756 975
18 3300047320 Ga0495672_0000076 Ga0495672_0000076_4613_7642 983
19 3300035695 Ga0373927_0008615 Ga0373927_0008615_1562_4717 984
20 3300037068 Ga0373925_0000523 Ga0373925_0000523_17560_20715 984
21 iso_pu_bacteria 3006984091 3006987428 985
22 3300002773 JGI25152J39213_1000392 JGI25152J39213_100039214 987
23 3300002774 JGI25150J39212_1000258 JGI25150J39212_100025816 987
24 3300003771 Ga0055526_1000678 Ga0055526_10006784 987
25 3300003771 Ga0055526_1001062 Ga0055526_100106215 987
26 3300003773 Ga0055537_1000100 Ga0055537_100010034 987
27 3300003775 Ga0055524_1001307 Ga0055524_10013077 987
28 3300003784 Ga0055534_1000085 Ga0055534_100008534 987
29 3300003790 Ga0055528_1000318 Ga0055528_100031829 987
30 3300025245 Ga0207425_1000013 Ga0207425_10000138 987
31 3300025258 Ga0209129_1000152 Ga0209129_10001529 987
32 3300025263 Ga0209565_1000082 Ga0209565_100008234 987
33 3300025273 Ga0209673_1000422 Ga0209673_100042230 987
34 3300025291 Ga0209675_1000176 Ga0209675_100017629 987
35 3300025295 Ga0209564_1000438 Ga0209564_100043829 987
36 3300025297 Ga0209758_1000031 Ga0209758_1000031456 987
37 3300025299 Ga0209256_1000323 Ga0209256_100032334 987
38 3300025299 Ga0209256_1001135 Ga0209256_100113518 987
39 3300006051 Ga0075364_10002199 Ga0075364_100021993 989
40 iso_pu_bacteria 2887443736 2887444245 997
41 iso_pu_bacteria 2738543010 2739232623 998
42 3300003187 JGI25151J46595_10005723 JGI25151J46595_100057233 999
43 3300009092 Ga0105250_10001788 Ga0105250_100017884 999
44 3300025294 Ga0209025_1000913 Ga0209025_100091336 999
45 3300025294 Ga0209025_1001967 Ga0209025_100196720 999
46 iso_pu_bacteria 8057582654 8057586918 999
47 iso_pu_bacteria 2885526491 2885532270 1002
48 iso_pu_bacteria 2904162308 2904167789 1003
49 iso_pu_bacteria 2907202186 2907208001 1003
50 iso_pu_bacteria 8057733483 8057734099 1003
51 iso_pu_bacteria 2671180694 2673816912 1004
52 iso_pu_bacteria 2888578766 2888583918 1004
53 iso_pu_bacteria 2512564013 2512637401 1005
54 iso_pu_bacteria 2915606848 2915612639 1005
55 iso_pu_bacteria 2929183550 2929189732 1005
56 iso_pu_bacteria 2643221676 2644421996 1006
57 iso_pu_bacteria 2865002811 2865007748 1006
58 iso_pu_bacteria 2904755435 2904757465 1006
59 iso_pu_bacteria 2915597211 2915598189 1006
60 3300009036 Ga0105244_10000153 Ga0105244_1000015321 1008
61 3300025728 Ga0207655_1000065 Ga0207655_1000065198 1008
62 3300047469 Ga0495673_0000055 Ga0495673_0000055_56063_59125 1008
63 3300048927 Ga0496124_0000618 Ga0496124_0000618_22288_25374 1008
64 iso_pu_bacteria 2929206907 2929207523 1008
65 iso_pu_bacteria 8056533031 8056534340 1008
66 iso_pu_bacteria 2818991459 2819673084 1009
67 iso_pu_bacteria 2891670763 2891671064 1009
68 3300025225 Ga0209566_100069 Ga0209566_10006978 1011
69 3300025294 Ga0209025_1013300 Ga0209025_10133001 1011
70 iso_pu_bacteria 2508501071 2508851958 1011
71 iso_pu_bacteria 2602042047 2603645515 1011
72 iso_pu_bacteria 2648501241 2649121529 1011
73 iso_pu_bacteria 2651869818 2652977039 1011
74 iso_pu_bacteria 2775506706 2775541194 1011
75 iso_pu_bacteria 2806310673 2807178227 1011
76 iso_pu_bacteria 640753048 640937511 1011
77 3300046660 Ga0495625_0001931 Ga0495625_0001931_11304_14375 1012
78 3300047446 Ga0495679_000005 Ga0495679_000005_262423_265494 1012
79 iso_pu_bacteria 2602042109 2603865614 1012
80 iso_pu_bacteria 2919108558 2919110675 1012
81 iso_pu_bacteria 2923525760 2923526538 1012
82 iso_pu_bacteria 2939573065 2939576482 1012
83 3300009036 Ga0105244_10011605 Ga0105244_100116053 1013
84 3300009092 Ga0105250_10000198 Ga0105250_100001983 1013
85 3300046542 Ga0495597_0003810 Ga0495597_0003810_4380_7490 1013
86 iso_pu_bacteria 2772190666 2772438531 1013
87 iso_pu_bacteria 2888366609 2888368593 1013
88 iso_pu_bacteria 2937967321 2937970326 1013
89 iso_pu_bacteria 8004592986 8004595498 1013
90 iso_pu_bacteria 2667528173 2671109168 1014
91 iso_pu_bacteria 2904474040 2904477555 1014
92 iso_pu_bacteria 2919150387 2919153738 1014
93 iso_pu_bacteria 2927143783 2927147246 1014
94 3300003856 Ga0058692_1000392 Ga0058692_100039210 1015
95 3300006946 Ga0079104_1001799 Ga0079104_10017996 1015
96 3300009011 Ga0105251_10000369 Ga0105251_1000036913 1015
97 3300009011 Ga0105251_10000738 Ga0105251_100007385 1015
98 3300009036 Ga0105244_10003382 Ga0105244_100033825 1015
99 3300009174 Ga0105241_10000002 Ga0105241_10000002744 1015
100 3300013102 Ga0157371_10002879 Ga0157371_100028799 1015
101 3300014497 Ga0182008_10001293 Ga0182008_100012933 1015
102 3300015679 Ga0183366_1001 Ga0183366_10012538 1015
103 3300015680 Ga0183370_1001 Ga0183370_10012538 1015
104 3300015685 Ga0183369_1001 Ga0183369_10012539 1015
105 3300015687 Ga0183368_1001 Ga0183368_10012538 1015
106 3300025728 Ga0207655_1000831 Ga0207655_100083117 1015
107 3300025735 Ga0207713_1000069 Ga0207713_100006956 1015
108 3300025735 Ga0207713_1000433 Ga0207713_100043332 1015
109 3300025735 Ga0207713_1003447 Ga0207713_10034476 1015
110 3300025911 Ga0207654_10000005 Ga0207654_10000005742 1015
111 3300027111 Ga0209281_1000027 Ga0209281_100002757 1015
112 3300027312 Ga0209371_1000001 Ga0209371_10000012489 1015
113 3300030500 Ga0268256_1000001 Ga0268256_1000001151 1015
114 3300042010 Ga0439452_000235 Ga0439452_000235_5919_9002 1015
115 3300046530 Ga0495654_0001923 Ga0495654_0001923_1210_4305 1015
116 3300046794 Ga0495589_0000004 Ga0495589_0000004_252738_255830 1015
117 3300048907 Ga0496104_0000207 Ga0496104_0000207_32320_35403 1015
118 3300048908 Ga0496105_0001430 Ga0496105_0001430_8438_11521 1015
119 3300048919 Ga0496116_0004814 Ga0496116_0004814_5761_8844 1015
120 3300048920 Ga0496117_0008452 Ga0496117_0008452_5224_8307 1015
121 3300048922 Ga0496119_0004433 Ga0496119_0004433_7377_10460 1015
122 3300048923 Ga0496120_0001743 Ga0496120_0001743_19851_22934 1015
123 3300048924 Ga0496121_0001163 Ga0496121_0001163_23769_26852 1015
124 3300048924 Ga0496121_0013309 Ga0496121_0013309_1596_4679 1015
125 3300048928 Ga0496125_0001970 Ga0496125_0001970_4515_7598 1015
126 3300048928 Ga0496125_0008483 Ga0496125_0008483_4234_7317 1015
127 3300048928 Ga0496125_0010994 Ga0496125_0010994_3305_6388 1015
128 3300048929 Ga0496126_0003520 Ga0496126_0003520_1938_5021 1015
129 3300006946 Ga0079104_1000278 Ga0079104_100027858 1016
130 3300009011 Ga0105251_10005447 Ga0105251_100054472 1016
131 3300009011 Ga0105251_10010774 Ga0105251_100107744 1016
132 3300009092 Ga0105250_10000293 Ga0105250_1000029336 1016
133 3300009148 Ga0105243_10003041 Ga0105243_100030413 1016
134 3300025711 Ga0207696_1000102 Ga0207696_100010284 1016
135 3300025735 Ga0207713_1005879 Ga0207713_10058795 1016
136 3300025935 Ga0207709_10001887 Ga0207709_100018879 1016
137 3300027111 Ga0209281_1000385 Ga0209281_10003856 1016
138 3300048928 Ga0496125_0000257 Ga0496125_0000257_6586_9678 1016
139 3300048929 Ga0496126_0006818 Ga0496126_0006818_7306_10398 1016
140 3300048923 Ga0496120_0000444 Ga0496120_0000444_39173_42262 1017
141 3300048923 Ga0496120_0001023 Ga0496120_0001023_15708_18797 1017
142 3300048927 Ga0496124_0000021 Ga0496124_0000021_268297_271386 1017
143 2162886007 SwRhRL2b_contig_636082 SwRhRL2b_0918.00000390 1018
144 3300002737 JGI25162J39368_1000007 JGI25162J39368_1000007185 1018
145 3300002771 JGI25163J39215_1000018 JGI25163J39215_100001825 1018
146 3300002772 JGI25164J39214_1000010 JGI25164J39214_1000010192 1018
147 3300002772 JGI25164J39214_1000013 JGI25164J39214_100001339 1018
148 3300002772 JGI25164J39214_1000016 JGI25164J39214_10000166 1018
149 3300003751 Ga0055538_1000006 Ga0055538_1000006185 1018
150 3300003752 Ga0055539_1000010 Ga0055539_1000010185 1018
151 3300003756 Ga0055533_1000013 Ga0055533_1000013185 1018
152 3300003759 Ga0055525_1000015 Ga0055525_1000015185 1018
153 3300003841 Ga0055541_1000007 Ga0055541_1000007191 1018
154 3300005289 Ga0065704_10000029 Ga0065704_100000296 1018
155 3300009036 Ga0105244_10000107 Ga0105244_1000010732 1018
156 3300009092 Ga0105250_10003891 Ga0105250_100038913 1018
157 3300025207 Ga0209760_100024 Ga0209760_10002436 1018
158 3300025224 Ga0209784_100022 Ga0209784_100022188 1018
159 3300025225 Ga0209566_100021 Ga0209566_100021188 1018
160 3300025226 Ga0209674_100038 Ga0209674_100038188 1018
161 3300025230 Ga0209563_100042 Ga0209563_100042188 1018
162 3300025231 Ga0207427_100027 Ga0207427_100027188 1018
163 3300025233 Ga0209437_100049 Ga0209437_100049188 1018
164 3300025253 Ga0209677_100025 Ga0209677_100025188 1018
165 3300025711 Ga0207696_1000726 Ga0207696_10007267 1018
166 3300025728 Ga0207655_1000124 Ga0207655_100012455 1018
167 3300046471 Ga0495650_0000039 Ga0495650_0000039_211954_215010 1018
168 3300046810 Ga0495660_0000023 Ga0495660_0000023_71596_74652 1018
169 3300048907 Ga0496104_0000219 Ga0496104_0000219_35726_38782 1018
170 3300048919 Ga0496116_0000112 Ga0496116_0000112_173466_176522 1018
171 3300048923 Ga0496120_0008666 Ga0496120_0008666_2102_5158 1018
172 3300048925 Ga0496122_0000067 Ga0496122_0000067_37268_40324 1018
173 3300048926 Ga0496123_0000056 Ga0496123_0000056_191042_194098 1018
174 3300048927 Ga0496124_0000660 Ga0496124_0000660_9944_13000 1018
175 3300048928 Ga0496125_0000183 Ga0496125_0000183_15691_18747 1018
176 3300048929 Ga0496126_0005700 Ga0496126_0005700_4202_7258 1018

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02837

Glyco_hydro_2_N

Glycosyl hydrolases family 2, sugar binding domain

45

212

0.97

PF02836

Glyco_hydro_2_C

Glycosyl hydrolases family 2, TIM barrel domain

377

662

0.94

PF16353

LacZ_4

Beta-galactosidase, domain 4

678

769

0.92

PF02929

Bgal_small_N

Beta galactosidase small chain

877

1147

0.89

PF00703

Glyco_hydro_2

Glycosyl hydrolases family 2

276

375

0.87

PF22666

Glyco_hydro_2_N2

Glycosyl hydrolase 2 galactose-binding domain-like

51

206

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
7btk-assembly1.cif.gz_A e.coli beta-galactosidase (e537q) in complex with fluorescent probe ksa01 0.9463 3 997
3vdb-assembly1.cif.gz_A e. coli (lacz) beta-galactosidase (n460t) in complex with galactonolactone 0.9454 3 997
3t0a-assembly1.cif.gz_B e. coli (lacz) beta-galactosidase (s796t) 0.9454 3 997
3sep-assembly1.cif.gz_A e. coli (lacz) beta-galactosidase (s796a) 0.9454 3 997
3e1f-assembly1.cif.gz_4 e.coli (lacz) beta-galactosidase (h418e) in complex with galactose 0.9452 1 997
ID Description Score Start End Superfamily
af_P06864_1_206_2.60.120.260 Mainly Beta;Sandwich;Jelly Rolls;Galactose-binding domain-like 0.9964 1 206 2.60.120.260
af_P06864_732_1002_2.70.98.10 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5; 0.9922 730 998 2.70.98.10
af_P06864_1_206_2.60.120.260 Mainly Beta;Sandwich;Jelly Rolls;Galactose-binding domain-like 0.9916 1 206 2.60.120.260
af_P06864_319_599_3.20.20.80 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9901 319 598 3.20.20.80
af_P06864_319_599_3.20.20.80 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9831 319 598 3.20.20.80
ID Description Score Start End GO Terms
AF-A0A2J5NBX8-F1-model_v4 beta-galactosidase (EC 3.2.1.23) 0.9973 372 544 GO:0004565
GO:0005990
GO:0009341
AF-A0A6M1HWK9-F1-model_v4 deleted 0.9923 43 193
AF-A0A8B4PW00-F1-model_v4 deleted 0.9901 322 436
AF-A0A2J5NBX8-F1-model_v4 beta-galactosidase (EC 3.2.1.23) 0.986 372 544 GO:0004565
GO:0005990
GO:0009341
AF-A0A6M1HWK9-F1-model_v4 deleted 0.9858 43 193

Feature Viewer

pLDDT pTM Quality
91.76 0.93 High
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Predicted Structure (AlphaFold2)

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