F268433

General Info

Members Datasets Scaffolds Average Seq Length
176 118 352 266

Family's Representative Sequence

Representative Sequence 3300025934|Ga0207686_10295459|Ga0207686_102954592
Length 312
Sequence LNYTRFDRHARHPDGALNGQITQQIQALRRSRGPYTIRGLPACRLPLPVDHYENFPVASWLLPARLRPPIEAIYAFARGADDIADEGSAPDAERLAGLARYEAALGAIERGERPEESFARLAQAVREYRLPVPLLRDLLDAFRQDVTCKRHESYDALREYCRRSANPVGRLLLHLFGMTDPRSLRESDDVCTALQLANFWQDVELDWGKGRVYIPIEDLAHFGVTEEDIAARRAEDRWQRLMAFECQRTRKLFEAGAPLGRRLPGRIGLEIRATVAGGRRILDRIDAARGDVFRHRPVLGPLDWLVIIAKAV

Samples

Sample ID Description Type Environment
1 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
70 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
71 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
72 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
73 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
76 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
77 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
78 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
79 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
80 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
83 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
84 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
85 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
86 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
97 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
98 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
99 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
100 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
101 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
102 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
103 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
106 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
107 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
108 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
111 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
112 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
113 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
114 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
115 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
116 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
117 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
118 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.14
Nodule 0
Rhizoplane 0
Rhizosphere 98.86
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207686_10295459 3300025934 Bacteria 1201
2 JGI25406J46586_10038429 3300003203 Bacteria 1716
3 Ga0070680_100080795 3300005336 Bacteria 2681
4 Ga0070692_10034372 3300005345 Bacteria 2561
5 Ga0070700_100130432 3300005441 Bacteria 1696
6 Ga0070694_100064280 3300005444 Bacteria 2511
7 Ga0070681_10001964 3300005458 Bacteria 18586
8 Ga0070681_10489191 3300005458 Bacteria 1143
9 Ga0068867_100070052 3300005459 Bacteria 2621
10 Ga0070706_100131447 3300005467 Bacteria 2336
11 Ga0070698_100252531 3300005471 Bacteria 1696
12 Ga0070698_100642124 3300005471 Bacteria 1002
13 Ga0070699_100206308 3300005518 Bacteria 1749
14 Ga0070699_100230654 3300005518 Bacteria 1651
15 Ga0070697_100009368 3300005536 Bacteria 7652
16 Ga0070697_100014288 3300005536 Bacteria 6240
17 Ga0070695_100019319 3300005545 Bacteria 4148
18 Ga0070695_100034536 3300005545 Bacteria 3171
19 Ga0070695_100130605 3300005545 Bacteria 1731
20 Ga0070695_100155394 3300005545 Bacteria 1600
21 Ga0070696_100016901 3300005546 Bacteria 4921
22 Ga0070696_100033395 3300005546 Bacteria 3535
23 Ga0070696_100182951 3300005546 Bacteria 1556
24 Ga0070693_100319439 3300005547 Bacteria 1053
25 Ga0070665_100084864 3300005548 Bacteria 3172
26 Ga0070704_100041197 3300005549 Bacteria 3186
27 Ga0070704_100449572 3300005549 Bacteria 1109
28 Ga0068857_100263711 3300005577 Bacteria 1582
29 Ga0068852_100161352 3300005616 Bacteria 2093
30 Ga0068859_100149824 3300005617 Bacteria 2409
31 Ga0068861_100576107 3300005719 Bacteria 1029
32 Ga0068858_100009798 3300005842 Bacteria 9119
33 Ga0081539_10000496 3300005985 Bacteria 82338
34 Ga0070716_100038187 3300006173 Bacteria 2658
35 Ga0075366_10000188 3300006195 Bacteria 27344
36 Ga0075428_100016967 3300006844 Bacteria 8043
37 Ga0075428_100040220 3300006844 Bacteria 5145
38 Ga0075428_100139025 3300006844 Bacteria 2640
39 Ga0075431_100044240 3300006847 Bacteria 4592
40 Ga0075431_100177030 3300006847 Bacteria 2190
41 Ga0075433_10086970 3300006852 Bacteria 2760
42 Ga0075434_100000220 3300006871 Bacteria 39286
43 Ga0075429_100000758 3300006880 Bacteria 25393
44 Ga0075429_100040354 3300006880 Bacteria 4063
45 Ga0075436_100010498 3300006914 Bacteria 6351
46 Ga0075436_100120063 3300006914 Bacteria 1838
47 Ga0097620_100149829 3300006931 Bacteria 2409
48 Ga0075435_100010347 3300007076 Bacteria 6820
49 Ga0111539_10033846 3300009094 Bacteria 6201
50 Ga0111539_10499515 3300009094 Bacteria 1417
51 Ga0105245_10142005 3300009098 Bacteria 2263
52 Ga0114129_10022973 3300009147 Bacteria 8847
53 Ga0114129_10433468 3300009147 Bacteria 1727
54 Ga0114129_11004574 3300009147 Bacteria 1050
55 Ga0105242_10008821 3300009176 Bacteria 7737
56 Ga0105242_10184751 3300009176 Bacteria 1842
57 Ga0105242_10294109 3300009176 Bacteria 1480
58 Ga0105248_10177182 3300009177 Bacteria 2403
59 Ga0105238_10425012 3300009551 Bacteria 1324
60 Ga0157378_10200695 3300013297 Bacteria 1886
61 Ga0163162_10056841 3300013306 Bacteria 3940
62 Ga0157372_10284924 3300013307 Bacteria 1921
63 Ga0207692_10113375 3300025898 Bacteria 1507
64 Ga0207692_10165767 3300025898 Bacteria 1277
65 Ga0207645_10048245 3300025907 Bacteria 2719
66 Ga0207643_10077371 3300025908 Bacteria 1923
67 Ga0207684_10129055 3300025910 Bacteria 2170
68 Ga0207684_10221927 3300025910 Bacteria 1631
69 Ga0207707_10286083 3300025912 Bacteria 1427
70 Ga0207662_10060974 3300025918 Bacteria 2264
71 Ga0207694_10466676 3300025924 Bacteria 1055
72 Ga0207659_10064184 3300025926 Bacteria 2657
73 Ga0207664_10494976 3300025929 Bacteria 1094
74 Ga0207686_10036385 3300025934 Bacteria 2963
75 Ga0207670_10269670 3300025936 Bacteria 1322
76 Ga0207711_10090218 3300025941 Bacteria 2694
77 Ga0207667_10017708 3300025949 Bacteria 8014
78 Ga0207651_10029456 3300025960 Bacteria 3479
79 Ga0207703_10060501 3300026035 Bacteria 3097
80 Ga0207639_10313633 3300026041 Bacteria 1390
81 Ga0207708_10164121 3300026075 Bacteria 1756
82 Ga0207648_10022298 3300026089 Bacteria 5690
83 Ga0207674_10311055 3300026116 Bacteria 1524
84 Ga0207675_100196341 3300026118 Bacteria 1937
85 Ga0207698_10188021 3300026142 Bacteria 1836
86 Ga0209981_1000952 3300027378 Bacteria 3639
87 Ga0210000_1003210 3300027462 Bacteria 2349
88 Ga0209995_1000737 3300027471 Bacteria 5013
89 Ga0209999_1003062 3300027543 Bacteria 2976
90 Ga0209966_1002243 3300027695 Bacteria 3230
91 Ga0268266_10095069 3300028379 Bacteria 2617
92 Ga0307410_10138340 3300031852 Bacteria 1798
93 Ga0307411_10215394 3300032005 Bacteria 1486
94 Ga0373955_0220140 3300035172 Bacteria 1134
95 Ga0373931_0008399 3300035691 Bacteria 4897
96 Ga0373931_0037916 3300035691 Bacteria 2519
97 Ga0373927_0027051 3300035695 Bacteria 3748
98 Ga0373925_0101924 3300037068 Bacteria 2208
99 Ga0439443_005613 3300042003 Bacteria 1685
100 Ga0439434_0011464 3300042435 Bacteria 2621
101 Ga0439435_0000073 3300042436 Bacteria 11906
102 Ga0439435_0000390 3300042436 Bacteria 6786
103 Ga0439444_0001971 3300042437 Bacteria 2742
104 Ga0450893_0006189 3300042532 Bacteria 1932
105 Ga0466964_0019400 3300044706 Bacteria 2613
106 Ga0466967_0015452 3300045976 Bacteria 5984
107 Ga0495580_0152018 3300046472 Bacteria 1604
108 Ga0495580_0197006 3300046472 Bacteria 1388
109 Ga0495621_0033183 3300046539 Bacteria 1779
110 Ga0495669_0005859 3300046684 Bacteria 5124
111 Ga0495636_0006358 3300047318 Bacteria 4641
112 Ga0501033_0096042 3300049570 Bacteria 2166
113 Ga0501036_0047245 3300049572 Bacteria 3646
114 Ga0501036_0110473 3300049572 Bacteria 2323
115 Ga0501036_0321030 3300049572 Bacteria 1294
116 Ga0501036_0333661 3300049572 Bacteria 1267
117 Ga0501038_0379205 3300049574 Bacteria 1097
118 Ga0501039_0002136 3300049575 Bacteria 14634
119 Ga0501039_0031583 3300049575 Bacteria 4083
120 Ga0501039_0158913 3300049575 Bacteria 1776
121 Ga0501040_0091044 3300049576 Bacteria 2120
122 Ga0501041_0029013 3300049577 Bacteria 3338
123 Ga0501041_0055754 3300049577 Bacteria 2413
124 Ga0501041_0191937 3300049577 Bacteria 1279
125 Ga0501041_0328744 3300049577 Bacteria 965
126 Ga0501042_0004589 3300049578 Bacteria 8819
127 Ga0501042_0032060 3300049578 Bacteria 3719
128 Ga0501042_0140887 3300049578 Bacteria 1739
129 Ga0501043_0141773 3300049579 Bacteria 1882
130 Ga0501046_0060740 3300049580 Bacteria 2957
131 Ga0501046_0212881 3300049580 Bacteria 1434
132 Ga0501048_0101059 3300049582 Bacteria 2034
133 Ga0501068_0059652 3300049584 Bacteria 2316
134 Ga0501069_0054299 3300049585 Bacteria 2232
135 Ga0501071_0057446 3300049587 Bacteria 2812
136 Ga0501071_0094699 3300049587 Bacteria 2197
137 Ga0501071_0412356 3300049587 Bacteria 1032
138 Ga0501072_0023173 3300049588 Bacteria 4821
139 Ga0501072_0040780 3300049588 Bacteria 3646
140 Ga0501072_0083833 3300049588 Bacteria 2527
141 Ga0501072_0580375 3300049588 Bacteria 884
142 Ga0501075_0001283 3300049591 Bacteria 16295
143 Ga0501075_0034875 3300049591 Bacteria 3749
144 Ga0501075_0500067 3300049591 Bacteria 927
145 Ga0501076_0001480 3300049592 Bacteria 15737
146 Ga0501077_0094953 3300049593 Bacteria 1890
147 Ga0501079_0013189 3300049741 Bacteria 6301
148 Ga0501079_0053045 3300049741 Bacteria 3129
149 Ga0501080_0004530 3300049742 Bacteria 12385
150 Ga0501080_0049700 3300049742 Bacteria 3903
151 Ga0501080_0280116 3300049742 Bacteria 1516
152 Ga0501081_0000921 3300049743 Bacteria 17468
153 Ga0501081_0001948 3300049743 Bacteria 12829
154 Ga0501083_0013825 3300049744 Bacteria 5644
155 Ga0501045_0035003 3300049824 Bacteria 3646
156 Ga0501045_0039304 3300049824 Bacteria 3443
157 Ga0501045_0509914 3300049824 Bacteria 893
158 nmdc:mga0k408_506_c1 3300050493 Bacteria 21412
159 nmdc:mga05p37_864299_c1 3300050507 Bacteria 980
160 nmdc:mga05p37_9321_c1 3300050507 Bacteria 11611
161 nmdc:mga09592_298_c1 3300050508 Bacteria 36073
162 nmdc:mga09592_311599_c1 3300050508 Bacteria 1364
163 nmdc:mga09592_56437_c1 3300050508 Bacteria 3319
164 nmdc:mga0qj67_11387_c1 3300050509 Bacteria 6665
165 nmdc:mga0qj67_369_c1 3300050509 Bacteria 30904
166 nmdc:mga0qj67_56057_c1 3300050509 Bacteria 3124
167 nmdc:mga06r32_192295_c1 3300050510 Bacteria 2028
168 nmdc:mga0n895_3445_c1 3300050512 Bacteria 12770
169 nmdc:mga0rr50_7500_c1 3300050513 Bacteria 6733
170 nmdc:mga08x19_20243_c1 3300050514 Bacteria 4097
171 nmdc:mga08x19_37434_c1 3300050514 Bacteria 3079
172 nmdc:mga08x19_63828_c1 3300050514 Bacteria 2390
173 nmdc:mga0a205_7908_c1 3300050515 Bacteria 9655
174 Ga0501082_0009229 3300060353 Bacteria 8502
175 Ga0530510_0011809 3300061734 Bacteria 6127
176 Ga0530510_0017225 3300061734 Bacteria 5119
177 Ga0207686_10295459
178 JGI25406J46586_10038429
179 Ga0070680_100080795
180 Ga0070692_10034372
181 Ga0070700_100130432
182 Ga0070694_100064280
183 Ga0070681_10001964
184 Ga0070681_10489191
185 Ga0068867_100070052
186 Ga0070706_100131447
187 Ga0070698_100252531
188 Ga0070698_100642124
189 Ga0070699_100206308
190 Ga0070699_100230654
191 Ga0070697_100009368
192 Ga0070697_100014288
193 Ga0070695_100019319
194 Ga0070695_100034536
195 Ga0070695_100130605
196 Ga0070695_100155394
197 Ga0070696_100016901
198 Ga0070696_100033395
199 Ga0070696_100182951
200 Ga0070693_100319439
201 Ga0070665_100084864
202 Ga0070704_100041197
203 Ga0070704_100449572
204 Ga0068857_100263711
205 Ga0068852_100161352
206 Ga0068859_100149824
207 Ga0068861_100576107
208 Ga0068858_100009798
209 Ga0081539_10000496
210 Ga0070716_100038187
211 Ga0075366_10000188
212 Ga0075428_100016967
213 Ga0075428_100040220
214 Ga0075428_100139025
215 Ga0075431_100044240
216 Ga0075431_100177030
217 Ga0075433_10086970
218 Ga0075434_100000220
219 Ga0075429_100000758
220 Ga0075429_100040354
221 Ga0075436_100010498
222 Ga0075436_100120063
223 Ga0097620_100149829
224 Ga0075435_100010347
225 Ga0111539_10033846
226 Ga0111539_10499515
227 Ga0105245_10142005
228 Ga0114129_10022973
229 Ga0114129_10433468
230 Ga0114129_11004574
231 Ga0105242_10008821
232 Ga0105242_10184751
233 Ga0105242_10294109
234 Ga0105248_10177182
235 Ga0105238_10425012
236 Ga0157378_10200695
237 Ga0163162_10056841
238 Ga0157372_10284924
239 Ga0207692_10113375
240 Ga0207692_10165767
241 Ga0207645_10048245
242 Ga0207643_10077371
243 Ga0207684_10129055
244 Ga0207684_10221927
245 Ga0207707_10286083
246 Ga0207662_10060974
247 Ga0207694_10466676
248 Ga0207659_10064184
249 Ga0207664_10494976
250 Ga0207686_10036385
251 Ga0207670_10269670
252 Ga0207711_10090218
253 Ga0207667_10017708
254 Ga0207651_10029456
255 Ga0207703_10060501
256 Ga0207639_10313633
257 Ga0207708_10164121
258 Ga0207648_10022298
259 Ga0207674_10311055
260 Ga0207675_100196341
261 Ga0207698_10188021
262 Ga0209981_1000952
263 Ga0210000_1003210
264 Ga0209995_1000737
265 Ga0209999_1003062
266 Ga0209966_1002243
267 Ga0268266_10095069
268 Ga0307410_10138340
269 Ga0307411_10215394
270 Ga0373955_0220140
271 Ga0373931_0008399
272 Ga0373931_0037916
273 Ga0373927_0027051
274 Ga0373925_0101924
275 Ga0439443_005613
276 Ga0439434_0011464
277 Ga0439435_0000073
278 Ga0439435_0000390
279 Ga0439444_0001971
280 Ga0450893_0006189
281 Ga0466964_0019400
282 Ga0466967_0015452
283 Ga0495580_0152018
284 Ga0495580_0197006
285 Ga0495621_0033183
286 Ga0495669_0005859
287 Ga0495636_0006358
288 Ga0501033_0096042
289 Ga0501036_0047245
290 Ga0501036_0110473
291 Ga0501036_0321030
292 Ga0501036_0333661
293 Ga0501038_0379205
294 Ga0501039_0002136
295 Ga0501039_0031583
296 Ga0501039_0158913
297 Ga0501040_0091044
298 Ga0501041_0029013
299 Ga0501041_0055754
300 Ga0501041_0191937
301 Ga0501041_0328744
302 Ga0501042_0004589
303 Ga0501042_0032060
304 Ga0501042_0140887
305 Ga0501043_0141773
306 Ga0501046_0060740
307 Ga0501046_0212881
308 Ga0501048_0101059
309 Ga0501068_0059652
310 Ga0501069_0054299
311 Ga0501071_0057446
312 Ga0501071_0094699
313 Ga0501071_0412356
314 Ga0501072_0023173
315 Ga0501072_0040780
316 Ga0501072_0083833
317 Ga0501072_0580375
318 Ga0501075_0001283
319 Ga0501075_0034875
320 Ga0501075_0500067
321 Ga0501076_0001480
322 Ga0501077_0094953
323 Ga0501079_0013189
324 Ga0501079_0053045
325 Ga0501080_0004530
326 Ga0501080_0049700
327 Ga0501080_0280116
328 Ga0501081_0000921
329 Ga0501081_0001948
330 Ga0501083_0013825
331 Ga0501045_0035003
332 Ga0501045_0039304
333 Ga0501045_0509914
334 nmdc:mga0k408_506_c1
335 nmdc:mga05p37_864299_c1
336 nmdc:mga05p37_9321_c1
337 nmdc:mga09592_298_c1
338 nmdc:mga09592_311599_c1
339 nmdc:mga09592_56437_c1
340 nmdc:mga0qj67_11387_c1
341 nmdc:mga0qj67_369_c1
342 nmdc:mga0qj67_56057_c1
343 nmdc:mga06r32_192295_c1
344 nmdc:mga0n895_3445_c1
345 nmdc:mga0rr50_7500_c1
346 nmdc:mga08x19_20243_c1
347 nmdc:mga08x19_37434_c1
348 nmdc:mga08x19_63828_c1
349 nmdc:mga0a205_7908_c1
350 Ga0501082_0009229
351 Ga0530510_0011809
352 Ga0530510_0017225

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00494

SQS_PSY

Squalene/phytoene synthase

49

303

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hd1-assembly1.cif.gz_A crystal structure of squalene synthase hpnc from alicyclobacillus acidocaldarius 0.9283 5 245
5iys-assembly1.cif.gz_A crystal structure of a dehydrosqualene synthase in complex with ligand 0.9252 15 266
3nri-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from s. aureus complexed with dehydrosqualene (dhs) 0.8867 15 266
3acx-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bph-673 0.8861 15 266
3vje-assembly2.cif.gz_B crystal structure of the y248a mutant of c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus in complex with zaragozic acid a 0.8841 15 266
ID Description Score Start End Superfamily
4hd1A00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9256 5 245 1.10.600.10
af_Q330K2_57_309_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9199 6 248 1.10.600.10
af_Q17477_122_396_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.887 14 247 1.10.600.10
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.884 8 266 1.10.600.10
3w7fA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8803 5 266 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A7W2B828-F1-model_v4 Squalene synthase HpnC (EC 2.5.1.21) 0.9924 1 237 GO:0004311
GO:0008299
GO:0051996
AF-A0A127PPX7-F1-model_v4 Squalene synthase HpnC (EC 2.4.1.21) 0.9866 25 266 GO:0004311
GO:0008299
GO:0009011
GO:0051996
AF-A0A1F3YJV7-F1-model_v4 Squalene synthase HpnC 0.986 54 266 GO:0004311
GO:0008299
AF-A0A349MQV9-F1-model_v4 Squalene synthase HpnC 0.9849 1 266 GO:0004311
GO:0008299
GO:0051996
AF-A0A7W2B828-F1-model_v4 Squalene synthase HpnC (EC 2.5.1.21) 0.9842 1 237 GO:0004311
GO:0008299
GO:0051996

Map