F267481

General Info

Members Datasets Scaffolds Average Seq Length
176 135 140 467

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10034735|rootH1_100347352
Length 560
Sequence MVRIDANCFVLVQFLRPHGAPIPPMQNTSSSSFSPFFTTSRSVPDLRRLEDLEPHESPGGNCSGCRAGLPGLSPRSRRKSQDAEFRLPPRGRLVVVSNRMVDPAQPAAGGLAAALGGLMKETPGLWLGWSGKVNDGPGVGRPPLQSYGRTTLVPIDLSQAEHDHYYAGFANKVLWPVFHGQVQHAESDAQANARYFESYEQVNRKFASTLAGLLQEDDAIWVHDYHLIPLATELRRLGCRQRMGFFNHIPFPTLEALRQIPQHGRLVRSLFDYDLVGMQAQRDLDRFHEYVEIRGQGRRSDEGHVQAFGRMVRSQSFPIGIDVAQFTSQHGVADGGHVLSRLRRERRKRVLMVAVDRLDYTKGLPERLEAFRLLLERHPECRRHVTLAQVVSPSRESVAAYAAVRDRVRGMVDALNKDYGSRGWTPVLHFEDVVDRRALPEYFRLGRVGVVTPVADGMNLVAKEFVAAQDPELPGALVLSEAAGASAQLTQALMVDPKNPADMAETFHQALHMPLQQRVERHAALLQTVQDEDLQRWSDSYLEVLEGGDPPPLPADQPAA

Samples

Sample ID Description Type Environment
1 2510917022 Rhizobium sp. AP16 Isolate Rhizosphere
2 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
3 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
4 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
5 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
6 2585427608 Agrobacterium rhizogenes OV677 Isolate Rhizosphere
7 2585427609 Agrobacterium rhizogenes CF263 Isolate Rhizosphere
8 2585428125 Agrobacterium rhizogenes CF262 Isolate Rhizosphere
9 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
10 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
11 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
12 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
13 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
14 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
15 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
16 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
17 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
18 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
19 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
20 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
21 2842694124 Methylopila sp. R-72369 Isolate Unclassified
22 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
23 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
24 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
25 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
26 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
27 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
28 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
29 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
30 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
31 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
32 2937843397 Mesorhizobium xinjiangense lm94 Isolate Rhizosphere
33 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
34 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
35 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
36 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
37 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
38 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
39 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
40 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
41 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
42 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
43 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
44 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
45 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
46 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
47 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
48 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
49 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
50 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
51 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
52 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
53 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
54 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
55 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
56 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
58 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
59 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
62 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
64 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
67 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
73 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
74 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
75 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
78 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
82 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
83 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
84 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
85 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
86 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
87 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
94 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
95 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
96 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
97 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
98 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
105 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
118 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
119 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
120 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
124 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
127 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
130 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
131 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
132 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
133 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
134 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
135 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 79.55
Metatranscriptomes 0
Isolates 20.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.43
Nodule 3.98
Rhizoplane 2.27
Rhizosphere 53.98
Stem 0
Stem Tuber 0
Unclassified 15.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1006774 3300002773 Bacteria 3048
2 JGI25159J45721_1000244 3300002987 Bacteria 25671
3 JGI25159J45721_1000431 3300002987 Bacteria 19338
4 JGI25159J45721_1007033 3300002987 Bacteria 3282
5 JGI25151J46595_10004850 3300003187 Bacteria 7029
6 JGI25151J46595_10027643 3300003187 Bacteria 2270
7 rootH1_10034735 3300003316 Bacteria 3396
8 rootL2_10135729 3300003322 Bacteria 7308
9 JGI25160J50197_1000012 3300003354 Bacteria 267582
10 JGI25161J50226_1000002 3300003374 Bacteria 420324
11 Ga0055526_1000006 3300003771 Bacteria 330857
12 Ga0055526_1011074 3300003771 Bacteria 4115
13 Ga0055526_1016348 3300003771 Bacteria 2911
14 Ga0055537_1000003 3300003773 Bacteria 220933
15 Ga0055524_1000009 3300003775 Bacteria 295254
16 Ga0055524_1005987 3300003775 Bacteria 5347
17 Ga0055534_1000004 3300003784 Bacteria 295251
18 Ga0055528_1000003 3300003790 Bacteria 330875
19 Ga0055540_1007867 3300003792 Bacteria 3939
20 Ga0055531_10000974 3300003794 Bacteria 22817
21 Ga0055543_1000011 3300004625 Bacteria 196089
22 Ga0065165_1000062 3300005262 Bacteria 178885
23 Ga0065165_1000082 3300005262 Bacteria 158536
24 Ga0070671_100020374 3300005355 Bacteria 5407
25 Ga0070679_100004520 3300005530 Bacteria 12855
26 Ga0075368_10030429 3300006042 Bacteria 2091
27 Ga0075370_10002972 3300006353 Bacteria 7967
28 Ga0075430_100000011 3300006846 Bacteria 99671
29 Ga0105240_10021952 3300009093 Bacteria 8478
30 Ga0111539_10012397 3300009094 Bacteria 10688
31 Ga0105248_10000981 3300009177 Bacteria 31678
32 Ga0209129_1000066 3300025258 Bacteria 226820
33 Ga0209565_1000001 3300025263 Bacteria 2950419
34 Ga0209673_1000001 3300025273 Bacteria 3176258
35 Ga0209673_1000024 3300025273 Bacteria 409632
36 Ga0209130_1000028 3300025284 Bacteria 325668
37 Ga0209130_1000564 3300025284 Bacteria 36607
38 Ga0209675_1000001 3300025291 Bacteria 2950293
39 Ga0209025_1000557 3300025294 Bacteria 69226
40 Ga0209025_1002793 3300025294 Bacteria 17605
41 Ga0209025_1011699 3300025294 Bacteria 5736
42 Ga0209564_1000001 3300025295 Bacteria 3176258
43 Ga0209256_1000002 3300025299 Bacteria 1906740
44 Ga0209256_1000667 3300025299 Bacteria 46381
45 Ga0207426_1000012 3300025302 Bacteria 730942
46 Ga0209051_1000306 3300025303 Bacteria 77135
47 Ga0209257_1000015 3300025304 Bacteria 908141
48 Ga0207711_10024623 3300025941 Bacteria 5046
49 Ga0207689_10051923 3300025942 Bacteria 3379
50 Ga0209968_1000116 3300027526 Bacteria 14650
51 Ga0307515_10000067 3300028794 Bacteria 242978
52 Ga0307514_10003019 3300031649 Bacteria 16628
53 Ga0316576_10009967 3300031727 Bacteria 6152
54 Ga0316578_10074190 3300031728 Bacteria 2017
55 Ga0307416_100036663 3300032002 Bacteria 3764
56 Ga0316574_0007848 3300035398 Bacteria 5883
57 Ga0316574_0012844 3300035398 Bacteria 4801
58 Ga0373931_0041204 3300035691 Bacteria 2426
59 Ga0395900_0058070 3300037418 Bacteria 3983
60 Ga0395900_0228528 3300037418 Bacteria 1872
61 Ga0395898_0004206 3300037466 Bacteria 15775
62 Ga0395898_0012687 3300037466 Bacteria 8704
63 Ga0395905_0305217 3300037471 Bacteria 1479
64 Ga0439453_0009757 3300041408 Bacteria 1569
65 Ga0439449_0001166 3300042007 Bacteria 10307
66 Ga0450911_000073 3300042115 Bacteria 41447
67 Ga0466972_0008750 3300044658 Bacteria 5078
68 Ga0453683_0007645 3300044673 Bacteria 7319
69 Ga0466965_0014999 3300044683 Bacteria 3675
70 Ga0466965_0018585 3300044683 Bacteria 3334
71 Ga0453684_0161240 3300044712 Bacteria 2653
72 Ga0466959_0013485 3300045049 Bacteria 5923
73 Ga0451576_0005682 3300045051 Bacteria 15565
74 Ga0495629_0010115 3300046459 Bacteria 6881
75 Ga0495638_0094784 3300046460 Bacteria 1794
76 Ga0495639_0072265 3300046475 Bacteria 1595
77 Ga0495662_0026784 3300046476 Bacteria 2784
78 Ga0495606_0063924 3300046507 Bacteria 2344
79 Ga0495622_0003965 3300046557 Bacteria 6910
80 Ga0495635_0061838 3300046663 Bacteria 2571
81 Ga0495657_0020197 3300046675 Bacteria 4792
82 Ga0496102_0169121 3300048905 Bacteria 2058
83 Ga0496113_0010726 3300048916 Bacteria 6072
84 Ga0496116_0046404 3300048919 Bacteria 2932
85 Ga0496121_0002600 3300048924 Bacteria 27263
86 Ga0496121_0012014 3300048924 Bacteria 9517
87 Ga0496123_0077805 3300048926 Bacteria 2035
88 Ga0496124_0000622 3300048927 Bacteria 59383
89 Ga0496125_0002992 3300048928 Bacteria 21179
90 Ga0496125_0004956 3300048928 Bacteria 15062
91 Ga0496125_0009479 3300048928 Bacteria 9993
92 Ga0496126_0038878 3300048929 Bacteria 4422
93 Ga0496126_0071751 3300048929 Bacteria 3082
94 Ga0501031_0097409 3300049568 Bacteria 1920
95 Ga0501032_0003313 3300049569 Bacteria 12388
96 Ga0501033_0003150 3300049570 Bacteria 13707
97 Ga0501033_0034632 3300049570 Bacteria 3787
98 Ga0501033_0037015 3300049570 Bacteria 3654
99 Ga0501034_0002441 3300049571 Bacteria 22430
100 Ga0501036_0065049 3300049572 Bacteria 3086
101 Ga0501037_0000253 3300049573 Bacteria 45817
102 Ga0501038_0101624 3300049574 Bacteria 2393
103 Ga0501043_0000100 3300049579 Bacteria 79167
104 Ga0501047_0003070 3300049581 Bacteria 15837
105 Ga0501047_0032207 3300049581 Bacteria 5060
106 Ga0501048_0076107 3300049582 Bacteria 2369
107 Ga0501068_0035289 3300049584 Bacteria 2984
108 Ga0501068_0063153 3300049584 Bacteria 2253
109 Ga0501069_0000020 3300049585 Bacteria 122595
110 Ga0501069_0008202 3300049585 Bacteria 5484
111 Ga0501070_0000193 3300049586 Bacteria 57357
112 Ga0501070_0000595 3300049586 Bacteria 32980
113 Ga0501070_0000836 3300049586 Bacteria 27961
114 Ga0501070_0060277 3300049586 Bacteria 3145
115 Ga0501071_0022544 3300049587 Bacteria 4390
116 Ga0501071_0085466 3300049587 Bacteria 2313
117 Ga0501073_0007382 3300049589 Bacteria 8172
118 Ga0501073_0067489 3300049589 Bacteria 2493
119 Ga0501074_0000063 3300049590 Bacteria 51162
120 Ga0501074_0023858 3300049590 Bacteria 4446
121 Ga0501074_0027632 3300049590 Bacteria 4114
122 Ga0501080_0004199 3300049742 Bacteria 12780
123 Ga0501080_0010754 3300049742 Bacteria 8371
124 Ga0501083_0000205 3300049744 Bacteria 38186
125 Ga0501035_0000070 3300049822 Bacteria 127442
126 Ga0501035_0001992 3300049822 Bacteria 20414
127 Ga0501035_0002240 3300049822 Bacteria 19152
128 Ga0501035_0063244 3300049822 Bacteria 3292
129 Ga0501035_0064433 3300049822 Bacteria 3257
130 Ga0501035_0219854 3300049822 Bacteria 1622
131 Ga0501044_0000037 3300049823 Bacteria 161924
132 Ga0501044_0010011 3300049823 Bacteria 10299
133 Ga0501044_0124921 3300049823 Bacteria 2571
134 nmdc:mga0qj67_20_c1 3300050509 Bacteria 109238
135 nmdc:mga06r32_184891_c1 3300050510 Bacteria 2070
136 nmdc:mga08y16_10645_c1 3300050511 Bacteria 9652
137 Ga0500651_0006738 3300053093 Bacteria 6652
138 Ga0500590_002185 3300053148 Bacteria 8531
139 Ga0500616_0001546 3300053153 Bacteria 21658
140 Ga0500627_0034591 3300053158 Bacteria 2143

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049570 Ga0501033_0037015 Ga0501033_0037015_282_1667 430
2 3300049582 Ga0501048_0076107 Ga0501048_0076107_463_1848 430
3 3300003771 Ga0055526_1000006 Ga0055526_1000006176 433
4 3300003773 Ga0055537_1000003 Ga0055537_100000349 433
5 3300003775 Ga0055524_1000009 Ga0055524_100000949 433
6 3300003784 Ga0055534_1000004 Ga0055534_100000449 433
7 3300003790 Ga0055528_1000003 Ga0055528_100000382 433
8 3300025263 Ga0209565_1000001 Ga0209565_10000012341 433
9 3300025273 Ga0209673_1000001 Ga0209673_10000012341 433
10 3300025291 Ga0209675_1000001 Ga0209675_1000001190 433
11 3300025295 Ga0209564_1000001 Ga0209564_1000001352 433
12 3300025299 Ga0209256_1000002 Ga0209256_10000021199 433
13 3300049822 Ga0501035_0063244 Ga0501035_0063244_1820_3205 444
14 3300002987 JGI25159J45721_1007033 JGI25159J45721_10070331 445
15 3300005262 Ga0065165_1000062 Ga0065165_100006280 445
16 3300025284 Ga0209130_1000564 Ga0209130_100056429 445
17 3300025294 Ga0209025_1002793 Ga0209025_100279317 445
18 iso_pu_bacteria 2511231027 2511391496 449
19 iso_pu_bacteria 2842871566 2842871622 449
20 iso_pu_bacteria 2928521798 2928523582 449
21 iso_pu_bacteria 2954011201 2954015864 449
22 3300048929 Ga0496126_0071751 Ga0496126_0071751_1409_2821 450
23 iso_pu_bacteria 2858688981 2858689253 450
24 iso_pu_bacteria 2937843397 2937844370 450
25 3300031649 Ga0307514_10003019 Ga0307514_100030197 451
26 iso_pu_bacteria 2765235802 2765468327 451
27 iso_pu_bacteria 2767802442 2770197211 451
28 iso_pu_bacteria 2775506902 2776269192 451
29 iso_pu_bacteria 2775506904 2776283669 451
30 iso_pu_bacteria 2839993093 2839997646 451
31 iso_pu_bacteria 2840764183 2840769745 451
32 iso_pu_bacteria 2889790730 2889794770 451
33 iso_pu_bacteria 2889914905 2889916712 451
34 iso_pu_bacteria 2894652903 2894654454 451
35 iso_pu_bacteria 2904578770 2904581876 451
36 iso_pu_bacteria 2919119836 2919123544 451
37 3300028794 Ga0307515_10000067 Ga0307515_1000006756 452
38 3300049584 Ga0501068_0063153 Ga0501068_0063153_829_2211 452
39 3300053093 Ga0500651_0006738 Ga0500651_0006738_4510_5892 452
40 iso_pu_bacteria 2510917022 2511137111 452
41 iso_pu_bacteria 2582581307 2585273636 452
42 iso_pu_bacteria 2585427531 2585559810 452
43 iso_pu_bacteria 2585427608 2585900490 452
44 iso_pu_bacteria 2585427609 2585906012 452
45 iso_pu_bacteria 2585428125 2587978873 452
46 iso_pu_bacteria 2842694124 2842694148 452
47 3300006042 Ga0075368_10030429 Ga0075368_100304292 453
48 3300025942 Ga0207689_10051923 Ga0207689_100519233 453
49 3300027526 Ga0209968_1000116 Ga0209968_100011615 453
50 3300037418 Ga0395900_0058070 Ga0395900_0058070_1999_3399 453
51 3300037466 Ga0395898_0012687 Ga0395898_0012687_316_1716 453
52 3300049569 Ga0501032_0003313 Ga0501032_0003313_974_2395 453
53 3300049570 Ga0501033_0003150 Ga0501033_0003150_8653_10074 453
54 3300049570 Ga0501033_0034632 Ga0501033_0034632_1851_3263 453
55 3300049572 Ga0501036_0065049 Ga0501036_0065049_97_1518 453
56 3300049573 Ga0501037_0000253 Ga0501037_0000253_28085_29506 453
57 3300049574 Ga0501038_0101624 Ga0501038_0101624_636_2051 453
58 3300049579 Ga0501043_0000100 Ga0501043_0000100_13411_14832 453
59 3300049581 Ga0501047_0003070 Ga0501047_0003070_3410_4822 453
60 3300049581 Ga0501047_0032207 Ga0501047_0032207_3369_4784 453
61 3300049584 Ga0501068_0035289 Ga0501068_0035289_1404_2825 453
62 3300049585 Ga0501069_0000020 Ga0501069_0000020_93231_94652 453
63 3300049585 Ga0501069_0008202 Ga0501069_0008202_3908_5323 453
64 3300049586 Ga0501070_0000193 Ga0501070_0000193_37671_39092 453
65 3300049586 Ga0501070_0000595 Ga0501070_0000595_24522_25937 453
66 3300049586 Ga0501070_0000836 Ga0501070_0000836_14180_15592 453
67 3300049586 Ga0501070_0060277 Ga0501070_0060277_92_1507 453
68 3300049587 Ga0501071_0022544 Ga0501071_0022544_2706_4127 453
69 3300049587 Ga0501071_0085466 Ga0501071_0085466_128_1543 453
70 3300049589 Ga0501073_0007382 Ga0501073_0007382_1419_2840 453
71 3300049590 Ga0501074_0000063 Ga0501074_0000063_34289_35710 453
72 3300049590 Ga0501074_0023858 Ga0501074_0023858_2917_4329 453
73 3300049590 Ga0501074_0027632 Ga0501074_0027632_709_2124 453
74 3300049742 Ga0501080_0004199 Ga0501080_0004199_6032_7444 453
75 3300049742 Ga0501080_0010754 Ga0501080_0010754_4241_5662 453
76 3300049744 Ga0501083_0000205 Ga0501083_0000205_25497_26918 453
77 3300049822 Ga0501035_0000070 Ga0501035_0000070_27944_29365 453
78 3300049822 Ga0501035_0001992 Ga0501035_0001992_6583_7998 453
79 3300049822 Ga0501035_0002240 Ga0501035_0002240_9217_10629 453
80 3300049822 Ga0501035_0064433 Ga0501035_0064433_1105_2520 453
81 3300049822 Ga0501035_0219854 Ga0501035_0219854_162_1547 453
82 3300049823 Ga0501044_0000037 Ga0501044_0000037_20592_22013 453
83 3300049823 Ga0501044_0010011 Ga0501044_0010011_2023_3438 453
84 3300049823 Ga0501044_0124921 Ga0501044_0124921_922_2334 453
85 iso_pu_bacteria 2513237146 2513924433 453
86 iso_pu_bacteria 2599185170 2599419605 453
87 iso_pu_bacteria 2690316117 2692314930 453
88 iso_pu_bacteria 2791355082 2792581061 453
89 iso_pu_bacteria 2838035591 2838039860 453
90 iso_pu_bacteria 2838074704 2838081039 453
91 iso_pu_bacteria 2838661181 2838664144 453
92 iso_pu_bacteria 2847417321 2847420014 453
93 iso_pu_bacteria 2848992105 2848994958 453
94 iso_pu_bacteria 2848992105 2848997168 453
95 iso_pu_bacteria 643692032 643692255 453
96 iso_pu_bacteria 8049293176 8049298449 453
97 3300003187 JGI25151J46595_10004850 JGI25151J46595_100048505 454
98 3300003316 rootH1_10034735 rootH1_100347352 454
99 3300003322 rootL2_10135729 rootL2_101357293 454
100 3300003771 Ga0055526_1011074 Ga0055526_10110743 454
101 3300003792 Ga0055540_1007867 Ga0055540_10078673 454
102 3300003794 Ga0055531_10000974 Ga0055531_100009744 454
103 3300005355 Ga0070671_100020374 Ga0070671_1000203745 454
104 3300005530 Ga0070679_100004520 Ga0070679_10000452012 454
105 3300009093 Ga0105240_10021952 Ga0105240_100219525 454
106 3300009177 Ga0105248_10000981 Ga0105248_1000098119 454
107 3300025303 Ga0209051_1000306 Ga0209051_100030626 454
108 3300025304 Ga0209257_1000015 Ga0209257_1000015427 454
109 3300025941 Ga0207711_10024623 Ga0207711_100246232 454
110 3300032002 Ga0307416_100036663 Ga0307416_1000366633 454
111 3300035398 Ga0316574_0007848 Ga0316574_0007848_2557_3933 454
112 3300035691 Ga0373931_0041204 Ga0373931_0041204_574_1992 454
113 3300037418 Ga0395900_0228528 Ga0395900_0228528_374_1777 454
114 3300037466 Ga0395898_0004206 Ga0395898_0004206_199_1623 454
115 3300037471 Ga0395905_0305217 Ga0395905_0305217_55_1458 454
116 3300041408 Ga0439453_0009757 Ga0439453_0009757_120_1523 454
117 3300042007 Ga0439449_0001166 Ga0439449_0001166_1542_2960 454
118 3300042115 Ga0450911_000073 Ga0450911_000073_10209_11633 454
119 3300044658 Ga0466972_0008750 Ga0466972_0008750_3445_4872 454
120 3300044673 Ga0453683_0007645 Ga0453683_0007645_5261_6664 454
121 3300044683 Ga0466965_0014999 Ga0466965_0014999_1893_3308 454
122 3300044683 Ga0466965_0018585 Ga0466965_0018585_647_2050 454
123 3300044712 Ga0453684_0161240 Ga0453684_0161240_1041_2429 454
124 3300045049 Ga0466959_0013485 Ga0466959_0013485_3192_4595 454
125 3300045051 Ga0451576_0005682 Ga0451576_0005682_7972_9375 454
126 3300048905 Ga0496102_0169121 Ga0496102_0169121_395_1807 454
127 3300048916 Ga0496113_0010726 Ga0496113_0010726_3249_4661 454
128 3300048919 Ga0496116_0046404 Ga0496116_0046404_1083_2474 454
129 3300048924 Ga0496121_0002600 Ga0496121_0002600_4455_5879 454
130 3300048927 Ga0496124_0000622 Ga0496124_0000622_10462_11835 454
131 3300048928 Ga0496125_0002992 Ga0496125_0002992_10394_11818 454
132 3300048928 Ga0496125_0004956 Ga0496125_0004956_12698_14071 454
133 3300048928 Ga0496125_0009479 Ga0496125_0009479_1822_3246 454
134 3300049568 Ga0501031_0097409 Ga0501031_0097409_260_1633 454
135 3300049571 Ga0501034_0002441 Ga0501034_0002441_17831_19249 454
136 3300006846 Ga0075430_100000011 Ga0075430_10000001121 455
137 3300009094 Ga0111539_10012397 Ga0111539_100123977 455
138 3300031727 Ga0316576_10009967 Ga0316576_100099675 455
139 3300031728 Ga0316578_10074190 Ga0316578_100741902 455
140 3300035398 Ga0316574_0012844 Ga0316574_0012844_234_1622 455
141 3300046460 Ga0495638_0094784 Ga0495638_0094784_121_1509 455
142 3300049589 Ga0501073_0067489 Ga0501073_0067489_812_2212 455
143 3300050509 nmdc:mga0qj67_20_c1 nmdc:mga0qj67_20_c1_99864_101252 455
144 3300050510 nmdc:mga06r32_184891_c1 nmdc:mga06r32_184891_c1_261_1649 455
145 3300050511 nmdc:mga08y16_10645_c1 nmdc:mga08y16_10645_c1_5369_6757 455
146 3300053158 Ga0500627_0034591 Ga0500627_0034591_594_1982 455
147 3300002987 JGI25159J45721_1000244 JGI25159J45721_100024420 456
148 3300002987 JGI25159J45721_1000431 JGI25159J45721_100043119 456
149 3300003354 JGI25160J50197_1000012 JGI25160J50197_1000012150 456
150 3300003374 JGI25161J50226_1000002 JGI25161J50226_1000002302 456
151 3300004625 Ga0055543_1000011 Ga0055543_100001155 456
152 3300005262 Ga0065165_1000082 Ga0065165_100008219 456
153 3300006353 Ga0075370_10002972 Ga0075370_100029726 456
154 3300025284 Ga0209130_1000028 Ga0209130_1000028148 456
155 3300025302 Ga0207426_1000012 Ga0207426_1000012433 456
156 3300053153 Ga0500616_0001546 Ga0500616_0001546_3457_4905 456
157 3300002773 JGI25152J39213_1006774 JGI25152J39213_10067742 457
158 3300003187 JGI25151J46595_10027643 JGI25151J46595_100276431 457
159 3300003771 Ga0055526_1016348 Ga0055526_10163481 457
160 3300003775 Ga0055524_1005987 Ga0055524_10059874 457
161 3300025258 Ga0209129_1000066 Ga0209129_100006626 457
162 3300025273 Ga0209673_1000024 Ga0209673_1000024232 457
163 3300025294 Ga0209025_1000557 Ga0209025_100055768 457
164 3300025294 Ga0209025_1011699 Ga0209025_10116994 457
165 3300025299 Ga0209256_1000667 Ga0209256_10006677 457
166 3300046459 Ga0495629_0010115 Ga0495629_0010115_278_1651 457
167 3300046475 Ga0495639_0072265 Ga0495639_0072265_166_1539 457
168 3300046476 Ga0495662_0026784 Ga0495662_0026784_491_1864 457
169 3300046507 Ga0495606_0063924 Ga0495606_0063924_123_1544 457
170 3300046557 Ga0495622_0003965 Ga0495622_0003965_1694_3067 457
171 3300046663 Ga0495635_0061838 Ga0495635_0061838_763_2136 457
172 3300046675 Ga0495657_0020197 Ga0495657_0020197_2736_4109 457
173 3300048924 Ga0496121_0012014 Ga0496121_0012014_2742_4115 457
174 3300048926 Ga0496123_0077805 Ga0496123_0077805_335_1708 457
175 3300048929 Ga0496126_0038878 Ga0496126_0038878_1308_2681 457
176 3300053148 Ga0500590_002185 Ga0500590_002185_3053_4426 457

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00982

Glyco_transf_20

Glycosyltransferase family 20

88

547

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5hxa-assembly1.cif.gz_A-2 crystal structure of an udp-forming alpha, alpha-terhalose-phosphate synthase from burkholderia xenovorans 0.9868 1 455
5tvg-assembly6.cif.gz_H crystal structure of an alpha,alpha-trehalose-phosphate synthase (udp-forming) from burkholderia vietnamiensis 0.9811 2 455
5tvg-assembly4.cif.gz_C crystal structure of an alpha,alpha-trehalose-phosphate synthase (udp-forming) from burkholderia vietnamiensis 0.9786 1 455
5tvg-assembly4.cif.gz_B crystal structure of an alpha,alpha-trehalose-phosphate synthase (udp-forming) from burkholderia vietnamiensis 0.977 1 455
5tvg-assembly5.cif.gz_G crystal structure of an alpha,alpha-trehalose-phosphate synthase (udp-forming) from burkholderia vietnamiensis 0.9767 2 455
ID Description Score Start End Superfamily
5tvgA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9932 234 440 3.40.50.2000
af_Q9Y119_299_464_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9884 259 423 3.40.50.2000
5tvgA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9791 234 440 3.40.50.2000
af_Q9Y119_299_464_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9766 259 423 3.40.50.2000
2wtxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.971 2 232 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A7Z0LB87-F1-model_v4 deleted 0.9987 70 204
AF-A0A526R7V1-F1-model_v4 Trehalose-6-phosphate synthase 0.9985 315 455 GO:0003825
GO:0005992
AF-A0A2J4UZB8-F1-model_v4 deleted 0.9964 323 455
AF-A0A060BQW5-F1-model_v4 Glyco_transf_20 0.9957 262 419 GO:0003825
GO:0005992
AF-A0A0F9B0X3-F1-model_v4 Uncharacterized protein 0.9953 342 457 GO:0003825
GO:0005992

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pLDDT pTM Quality
92.07 0.9 High
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Predicted Structure (AlphaFold2)

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