F267148

General Info

Members Datasets Scaffolds Average Seq Length
175 134 350 832

Family's Representative Sequence

Representative Sequence 3300049587|Ga0501071_0042932|Ga0501071_0042932_228_2858
Length 876
Sequence MPPVNVASRATRRAPVTPDGRVSSSPWVWSRLEEGSIGMSAVPARANVVIIGAGIVGNSMAWHLARLGWRDIVLLDKGPLPNPGGSTGHASNFIFLTDHSKEMTALTLDSVVQYQEMGVFTRSGGIEVARTPERMEELKRRMASSRSWGIESELLTPAQVKALVPYLDDSVILGGFSTPEIGVVDSLRAGTIMRERAQELGALTIAASTEVTGIDVVEGHARRVHSDKGSIDADVVVVACGIWSPRIAAMAGASIPLTPAVHQMISVGPVPILAETVGEISFPIVRDMDTNMYERQHGSDLEVGSYAHRTIIVQPDDIPSIAASALSPTELPFTQEDFELQMEQALELVPDVLGDERVGIRHAINGLLSLTPDGMPILGETPEVKGLWSVAAIWIKEAPGIARAVAEWMTHGTPEIDLHASDVARFYDHQRTRQHIEARTTEGFNKTYGIVHPMEQWASNRDIRLSPVNIRQRELGAVFFEAAGWERPFWYGANESLLAEYGDRVMPREAEWESRWWSPIVNAEHLAMRDRVAIVDLAAFAIFDVEGPGALASLQALVVGQVDVPVGRVVYTPLLAETGGIIADLTIIRLAHDRFRVVTGGGLGMRDRKWFTDHLPADGSAQLHDQTSAVYTLGVWGPRARDVLAAATRDDVSNEGFPFGTARTIEIDGVRALASRISYVGELGWEIYVPMEQGLRLWDTLWATGEPHGMRAAGIGVYATTGRLEKGYRAHGAELELEFDLVEAGMARPKVKEAAFVGKAAYLRQRSTPPAAILCTLTLDDPRSSSGVARYMLGREPILAPDGSSLVDAKGRRSYVTSAGSGPSVGRHLLMSYLPPAHAVVGKKLLVEYFGERYPVSVAVAGSTPLFDPDNARIRG

Samples

Sample ID Description Type Environment
1 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
44 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
45 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
48 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
49 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
50 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
51 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
52 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
55 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
56 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
57 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
58 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
59 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
62 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
63 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
64 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
65 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
66 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
67 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
68 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
69 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
72 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
73 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
76 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
77 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
78 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
79 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
80 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
81 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
82 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
83 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
84 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
85 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
86 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
87 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
88 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
89 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
90 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
91 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
92 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
93 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
94 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
95 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
96 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
105 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
106 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
107 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
108 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
109 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
110 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
111 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
112 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
115 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
116 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
117 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
118 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
120 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
121 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
122 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
123 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
124 2508501039 Frankia saprophytica CN3 Isolate Nodule
125 2582580736 Prauserella sp. Am3 Isolate Unclassified
126 2643221561 Nocardioides sp. Root151 Isolate Unclassified
127 2643221615 Nocardioides sp. Root224 Isolate Unclassified
128 2643221641 Nocardioides sp. Root122 Isolate Unclassified
129 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
130 2643221696 Nocardioides sp. Root140 Isolate Unclassified
131 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
132 2837183177 Egibacter rhizosphaerae EGI 80759 Isolate Unclassified
133 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
134 8002784119 Frankia sp. AgB1.9 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.57
Metatranscriptomes 1.14
Isolates 6.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.71
Nodule 1.14
Rhizoplane 6.29
Rhizosphere 83.43
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501071_0042932 3300049587 Bacteria 3241
2 LJQas_1002098 3300000549 Bacteria 2836
3 JGI24740J21852_10014557 3300001979 Bacteria 2896
4 Ga0070658_10008970 3300005327 Bacteria 8036
5 Ga0070683_100005046 3300005329 Bacteria 10960
6 Ga0070687_100005381 3300005343 Bacteria 5175
7 Ga0070706_100000027 3300005467 Bacteria 156057
8 Ga0070707_100002773 3300005468 Bacteria 16691
9 Ga0070707_100003229 3300005468 Bacteria 15441
10 Ga0070698_100000925 3300005471 Bacteria 32068
11 Ga0070698_100105887 3300005471 Bacteria 2782
12 Ga0070699_100000238 3300005518 Bacteria 53787
13 Ga0070679_100078248 3300005530 Bacteria 3296
14 Ga0070684_100002405 3300005535 Bacteria 13795
15 Ga0070697_100000005 3300005536 Bacteria 259746
16 Ga0070697_100002628 3300005536 Bacteria 13828
17 Ga0070697_100054194 3300005536 Bacteria 3260
18 Ga0070665_100000310 3300005548 Bacteria 75775
19 Ga0068855_100049128 3300005563 Bacteria 4977
20 Ga0068852_100003408 3300005616 Bacteria 11101
21 Ga0068861_100035151 3300005719 Bacteria 3710
22 Ga0068860_100000253 3300005843 Bacteria 79802
23 Ga0081455_10004693 3300005937 Bacteria 15204
24 Ga0081538_10001232 3300005981 Bacteria 26831
25 Ga0075367_10008523 3300006178 Bacteria 5316
26 Ga0075428_100052665 3300006844 Bacteria 4460
27 Ga0075431_100015960 3300006847 Bacteria 7620
28 Ga0075431_100048533 3300006847 Bacteria 4379
29 Ga0075429_100000350 3300006880 Bacteria 33659
30 Ga0105245_10003758 3300009098 Bacteria 13512
31 Ga0105245_10023724 3300009098 Bacteria 5385
32 Ga0114129_10033871 3300009147 Bacteria 7215
33 Ga0105242_10015843 3300009176 Bacteria 5856
34 Ga0105239_10005616 3300010375 Bacteria 14666
35 Ga0105239_10026238 3300010375 Bacteria 6414
36 Ga0105246_10001145 3300011119 Bacteria 15376
37 Ga0163162_10009866 3300013306 Bacteria 9287
38 Ga0157375_10006638 3300013308 Bacteria 10070
39 Ga0207647_10031946 3300025904 Bacteria 3386
40 Ga0207684_10000007 3300025910 Bacteria 612969
41 Ga0207684_10000015 3300025910 Bacteria 427232
42 Ga0207684_10000562 3300025910 Bacteria 45293
43 Ga0207684_10014083 3300025910 Bacteria 6906
44 Ga0207646_10000069 3300025922 Bacteria 143056
45 Ga0207646_10002493 3300025922 Bacteria 21743
46 Ga0207646_10002862 3300025922 Bacteria 20036
47 Ga0207665_10022908 3300025939 Bacteria 4112
48 Ga0207691_10004612 3300025940 Bacteria 13342
49 Ga0207661_10004987 3300025944 Bacteria 9308
50 Ga0207648_10006625 3300026089 Bacteria 11506
51 Ga0207675_100003105 3300026118 Bacteria 16284
52 Ga0207428_10015526 3300027907 Bacteria 6585
53 Ga0268266_10000555 3300028379 Bacteria 52036
54 Ga0268264_10000220 3300028381 Bacteria 111692
55 Ga0265319_1001565 3300028563 Bacteria 13429
56 Ga0265334_10006840 3300028573 Bacteria 4898
57 Ga0265318_10006115 3300028577 Bacteria 5580
58 Ga0265338_10030670 3300028800 Bacteria 5289
59 Ga0265324_10003600 3300029957 Bacteria 7290
60 Ga0265320_10010469 3300031240 Bacteria 5523
61 Ga0265313_10015976 3300031595 Bacteria 4340
62 Ga0307508_10003699 3300031616 Bacteria 15327
63 Ga0316575_10002049 3300031665 Bacteria 6707
64 Ga0316579_10003072 3300031691 Bacteria 6435
65 Ga0316579_10010165 3300031691 Bacteria 3971
66 Ga0316576_10026470 3300031727 Bacteria 4071
67 Ga0316578_10011274 3300031728 Bacteria 4668
68 Ga0316578_10024471 3300031728 Bacteria 3388
69 Ga0307516_10024704 3300031730 Bacteria 6135
70 Ga0307412_10037748 3300031911 Bacteria 3106
71 Ga0307409_100066562 3300031995 Bacteria 2842
72 Ga0307415_100001830 3300032126 Bacteria 10426
73 Ga0307415_100020854 3300032126 Bacteria 4012
74 Ga0316588_1003891 3300033528 Bacteria 2775
75 Ga0316596_1001500 3300033541 Bacteria 4735
76 Ga0373926_0000338 3300035083 Bacteria 11831
77 Ga0373953_0014339 3300035117 Bacteria 2848
78 Ga0316574_0015083 3300035398 Bacteria 4478
79 Ga0373927_0008106 3300035695 Bacteria 7088
80 Ga0316582_0007800 3300036647 Bacteria 5719
81 Ga0316582_0011241 3300036647 Bacteria 4941
82 Ga0316584_0002935 3300036712 Bacteria 10957
83 Ga0395900_0036372 3300037418 Bacteria 5076
84 Ga0395898_0003634 3300037466 Bacteria 17152
85 Ga0395898_0018992 3300037466 Bacteria 7001
86 Ga0436364_0956953 3300037853 Bacteria 4421
87 Ga0436365_0526936 3300039437 Bacteria 16630
88 Ga0466966_0024007 3300044684 Bacteria 3990
89 Ga0466963_0015664 3300044694 Bacteria 4702
90 Ga0466963_0016687 3300044694 Bacteria 4568
91 Ga0466960_0000142 3300044901 Bacteria 24451
92 Ga0466960_0005290 3300044901 Bacteria 5101
93 Ga0466959_0001693 3300045049 Bacteria 13681
94 Ga0466959_0019601 3300045049 Bacteria 4975
95 Ga0466958_0009690 3300045836 Bacteria 5375
96 Ga0466967_0003904 3300045976 Bacteria 9893
97 Ga0466967_0014342 3300045976 Bacteria 6169
98 Ga0466967_0040473 3300045976 Bacteria 4012
99 Ga0495603_0034556 3300046455 Bacteria 3039
100 Ga0495629_0020822 3300046459 Bacteria 4681
101 Ga0495594_0010107 3300046499 Bacteria 4890
102 Ga0495657_0006530 3300046675 Bacteria 9119
103 Ga0495623_0034235 3300046679 Bacteria 3258
104 Ga0495613_0001071 3300046689 Bacteria 20866
105 Ga0495600_0003482 3300046809 Bacteria 9254
106 Ga0495581_0000829 3300047315 Bacteria 16482
107 Ga0495604_0012737 3300047317 Bacteria 6693
108 Ga0495675_0011795 3300047444 Bacteria 5491
109 Ga0496102_0007862 3300048905 Bacteria 9110
110 Ga0496103_0019039 3300048906 Bacteria 4122
111 Ga0496105_0045801 3300048908 Bacteria 3609
112 Ga0496108_0009444 3300048911 Bacteria 7900
113 Ga0496109_0006492 3300048912 Bacteria 9850
114 Ga0496109_0010389 3300048912 Bacteria 7949
115 Ga0496110_0006921 3300048913 Bacteria 9018
116 Ga0496110_0066100 3300048913 Bacteria 3197
117 Ga0496111_0006298 3300048914 Bacteria 7696
118 Ga0496112_0000775 3300048915 Bacteria 22490
119 Ga0496114_0005865 3300048917 Bacteria 9649
120 Ga0501036_0051208 3300049572 Bacteria 3496
121 Ga0501037_0009679 3300049573 Bacteria 7074
122 Ga0501038_0007903 3300049574 Bacteria 9806
123 Ga0501039_0006900 3300049575 Bacteria 8638
124 Ga0501040_0006791 3300049576 Bacteria 7420
125 Ga0501041_0001057 3300049577 Bacteria 15059
126 Ga0501046_0024779 3300049580 Bacteria 4917
127 Ga0501048_0006894 3300049582 Bacteria 8635
128 Ga0501048_0014596 3300049582 Bacteria 5815
129 Ga0501067_0002737 3300049583 Bacteria 9692
130 Ga0501067_0006935 3300049583 Bacteria 6286
131 Ga0501068_0022255 3300049584 Bacteria 3705
132 Ga0501069_0016425 3300049585 Bacteria 3977
133 Ga0501070_0003191 3300049586 Bacteria 14261
134 Ga0501070_0005128 3300049586 Bacteria 11167
135 Ga0501071_0002330 3300049587 Bacteria 11464
136 Ga0501072_0001678 3300049588 Bacteria 16491
137 Ga0501072_0041538 3300049588 Bacteria 3612
138 Ga0501072_0045156 3300049588 Bacteria 3464
139 Ga0501074_0001687 3300049590 Bacteria 15040
140 Ga0501074_0004289 3300049590 Bacteria 10181
141 Ga0501074_0005443 3300049590 Bacteria 9157
142 Ga0501076_0010408 3300049592 Bacteria 6902
143 Ga0501076_0024277 3300049592 Bacteria 4684
144 Ga0501076_0032032 3300049592 Bacteria 4102
145 Ga0501077_0031381 3300049593 Bacteria 3381
146 Ga0501077_0050930 3300049593 Bacteria 2632
147 Ga0501079_0006177 3300049741 Bacteria 8986
148 Ga0501080_0004003 3300049742 Bacteria 13046
149 Ga0501081_0004122 3300049743 Bacteria 9312
150 Ga0501045_0012528 3300049824 Bacteria 5973
151 Ga0501045_0017714 3300049824 Bacteria 5058
152 Ga0501045_0018285 3300049824 Bacteria 4984
153 Ga0501045_0055426 3300049824 Bacteria 2899
154 nmdc:mga05p37_105515_c1 3300050507 Bacteria 3466
155 nmdc:mga05p37_3158_c1 3300050507 Bacteria 19174
156 nmdc:mga09592_4125_c1 3300050508 Bacteria 11736
157 nmdc:mga06r32_2321_c1 3300050510 Bacteria 17031
158 nmdc:mga06r32_251_c1 3300050510 Bacteria 44202
159 nmdc:mga08y16_7365_c1 3300050511 Bacteria 11540
160 Ga0500556_0000308 3300053104 Bacteria 37083
161 Ga0500593_000051 3300053117 Bacteria 42102
162 Ga0501082_0023801 3300060353 Bacteria 5281
163 Ga0501082_0057903 3300060353 Bacteria 3338
164 Ga0530510_0011321 3300061734 Bacteria 6261
165 2508673356 2508501039 Bacteria 9978592
166 2583150030 2582580736 Bacteria 5325865
167 2643825140 2643221561 Bacteria 4984412
168 2644092188 2643221615 Bacteria 5487866
169 2644229773 2643221641 Bacteria 4490190
170 2644321991 2643221657 Bacteria 5490246
171 2644534556 2643221696 Bacteria 5431823
172 2812333348 2811994874 Bacteria 5367947
173 2837184533 2837183177 Bacteria 4637169
174 2868094662 2868088558 Bacteria 7609351
175 8002785652 8002784119 Bacteria 9788632
176 Ga0501071_0042932
177 LJQas_1002098
178 JGI24740J21852_10014557
179 Ga0070658_10008970
180 Ga0070683_100005046
181 Ga0070687_100005381
182 Ga0070706_100000027
183 Ga0070707_100002773
184 Ga0070707_100003229
185 Ga0070698_100000925
186 Ga0070698_100105887
187 Ga0070699_100000238
188 Ga0070679_100078248
189 Ga0070684_100002405
190 Ga0070697_100000005
191 Ga0070697_100002628
192 Ga0070697_100054194
193 Ga0070665_100000310
194 Ga0068855_100049128
195 Ga0068852_100003408
196 Ga0068861_100035151
197 Ga0068860_100000253
198 Ga0081455_10004693
199 Ga0081538_10001232
200 Ga0075367_10008523
201 Ga0075428_100052665
202 Ga0075431_100015960
203 Ga0075431_100048533
204 Ga0075429_100000350
205 Ga0105245_10003758
206 Ga0105245_10023724
207 Ga0114129_10033871
208 Ga0105242_10015843
209 Ga0105239_10005616
210 Ga0105239_10026238
211 Ga0105246_10001145
212 Ga0163162_10009866
213 Ga0157375_10006638
214 Ga0207647_10031946
215 Ga0207684_10000007
216 Ga0207684_10000015
217 Ga0207684_10000562
218 Ga0207684_10014083
219 Ga0207646_10000069
220 Ga0207646_10002493
221 Ga0207646_10002862
222 Ga0207665_10022908
223 Ga0207691_10004612
224 Ga0207661_10004987
225 Ga0207648_10006625
226 Ga0207675_100003105
227 Ga0207428_10015526
228 Ga0268266_10000555
229 Ga0268264_10000220
230 Ga0265319_1001565
231 Ga0265334_10006840
232 Ga0265318_10006115
233 Ga0265338_10030670
234 Ga0265324_10003600
235 Ga0265320_10010469
236 Ga0265313_10015976
237 Ga0307508_10003699
238 Ga0316575_10002049
239 Ga0316579_10003072
240 Ga0316579_10010165
241 Ga0316576_10026470
242 Ga0316578_10011274
243 Ga0316578_10024471
244 Ga0307516_10024704
245 Ga0307412_10037748
246 Ga0307409_100066562
247 Ga0307415_100001830
248 Ga0307415_100020854
249 Ga0316588_1003891
250 Ga0316596_1001500
251 Ga0373926_0000338
252 Ga0373953_0014339
253 Ga0316574_0015083
254 Ga0373927_0008106
255 Ga0316582_0007800
256 Ga0316582_0011241
257 Ga0316584_0002935
258 Ga0395900_0036372
259 Ga0395898_0003634
260 Ga0395898_0018992
261 Ga0436364_0956953
262 Ga0436365_0526936
263 Ga0466966_0024007
264 Ga0466963_0015664
265 Ga0466963_0016687
266 Ga0466960_0000142
267 Ga0466960_0005290
268 Ga0466959_0001693
269 Ga0466959_0019601
270 Ga0466958_0009690
271 Ga0466967_0003904
272 Ga0466967_0014342
273 Ga0466967_0040473
274 Ga0495603_0034556
275 Ga0495629_0020822
276 Ga0495594_0010107
277 Ga0495657_0006530
278 Ga0495623_0034235
279 Ga0495613_0001071
280 Ga0495600_0003482
281 Ga0495581_0000829
282 Ga0495604_0012737
283 Ga0495675_0011795
284 Ga0496102_0007862
285 Ga0496103_0019039
286 Ga0496105_0045801
287 Ga0496108_0009444
288 Ga0496109_0006492
289 Ga0496109_0010389
290 Ga0496110_0006921
291 Ga0496110_0066100
292 Ga0496111_0006298
293 Ga0496112_0000775
294 Ga0496114_0005865
295 Ga0501036_0051208
296 Ga0501037_0009679
297 Ga0501038_0007903
298 Ga0501039_0006900
299 Ga0501040_0006791
300 Ga0501041_0001057
301 Ga0501046_0024779
302 Ga0501048_0006894
303 Ga0501048_0014596
304 Ga0501067_0002737
305 Ga0501067_0006935
306 Ga0501068_0022255
307 Ga0501069_0016425
308 Ga0501070_0003191
309 Ga0501070_0005128
310 Ga0501071_0002330
311 Ga0501072_0001678
312 Ga0501072_0041538
313 Ga0501072_0045156
314 Ga0501074_0001687
315 Ga0501074_0004289
316 Ga0501074_0005443
317 Ga0501076_0010408
318 Ga0501076_0024277
319 Ga0501076_0032032
320 Ga0501077_0031381
321 Ga0501077_0050930
322 Ga0501079_0006177
323 Ga0501080_0004003
324 Ga0501081_0004122
325 Ga0501045_0012528
326 Ga0501045_0017714
327 Ga0501045_0018285
328 Ga0501045_0055426
329 nmdc:mga05p37_105515_c1
330 nmdc:mga05p37_3158_c1
331 nmdc:mga09592_4125_c1
332 nmdc:mga06r32_2321_c1
333 nmdc:mga06r32_251_c1
334 nmdc:mga08y16_7365_c1
335 Ga0500556_0000308
336 Ga0500593_000051
337 Ga0501082_0023801
338 Ga0501082_0057903
339 Ga0530510_0011321
340 2508673356
341 2583150030
342 2643825140
343 2644092188
344 2644229773
345 2644321991
346 2644534556
347 2812333348
348 2837184533
349 2868094662
350 8002785652

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16350

FAO_M

FAD dependent oxidoreductase central domain

411

466

0.99

PF01571

GCV_T

Aminomethyltransferase folate-binding domain

468

748

0.97

PF01266

DAO

FAD dependent oxidoreductase

47

408

0.84

PF08669

GCV_T_C

Glycine cleavage T-protein C-terminal barrel domain

774

868

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
1woo-assembly1.cif.gz_A crystal structure of t-protein of the glycine cleavage system 0.9369 430 826
1yx2-assembly1.cif.gz_A crystal structure of the probable aminomethyltransferase from bacillus subtilis 0.9295 430 826
3gsi-assembly1.cif.gz_A crystal structure of d552a dimethylglycine oxidase mutant of arthrobacter globiformis in complex with tetrahydrofolate 0.9207 7 841
3gsi-assembly1.cif.gz_A crystal structure of d552a dimethylglycine oxidase mutant of arthrobacter globiformis in complex with tetrahydrofolate 0.9185 7 841
1pj6-assembly1.cif.gz_A crystal structure of dimethylglycine oxidase of arthrobacter globiformis in complex with folic acid 0.918 7 841
ID Description Score Start End Superfamily
3gsiA03 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9556 421 701 3.30.1360.120
af_A0A1D8PNH7_186_307_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9537 9 39 3.40.50.720
1wopA01 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9461 430 684 3.30.1360.120
3gsiA03 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9368 421 701 3.30.1360.120
1yx2B01 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9337 430 684 3.30.1360.120
ID Description Score Start End GO Terms
AF-A0A6J7TF18-F1-model_v4 Unannotated protein 0.984 554 840 GO:0005739
AF-A0A527YQ65-F1-model_v4 FAD-dependent oxidoreductase 0.9824 588 675
AF-A0A7K0ZT34-F1-model_v4 Glycine cleavage system protein T 0.9805 549 840
AF-A0A7W0RL77-F1-model_v4 FAD-binding oxidoreductase 0.98 1 278 GO:0005737
AF-A0A1F8RJ22-F1-model_v4 Glycine cleavage system protein T 0.9786 1 628 GO:0005737

Map