F266259
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 175 | 129 | 350 | 303 |
Family's Representative Sequence
| Representative Sequence | 3300009147|Ga0114129_10023034|Ga0114129_1002303410 |
| Length | 362 |
| Sequence | VPARAREVQRAGQPAQPGAHHHDPVGRAGHRAHGSAGELGVDHPVRVTHAASCIDYRVDYYEKMSPGLAAAYERCRALHRRHGRTYYLATRLLPAWKRPHVHALYGFTRYADEIVDRIDAREPADRAATLRAWSDRFLAGLAGEPVDDPLLPAVLHTIARFDLDRADFTAFLHSMAMDLEVGGYPDYPALLSYMEGSAAAIGTMMLPVLEPTDPALAREPARQLGFAFQLTNFIRDVGEDLDRDRVYLPAADLAAFGVTVADLRADAGRRRARPGVRALIGYEVMRARRHYADAAPGIPLLAPSSQACIRTAFHLYAGILDEVERAGYDVFARRAVVPNRRRIGVAARCLLTRPGAPVRSPR |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 2 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 3 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 5 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 6 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 7 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Metagenome | Rhizosphere |
| 10 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 17 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 18 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 19 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 21 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 22 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 23 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 24 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 25 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 26 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 27 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 28 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 29 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 30 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 31 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 32 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 33 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 38 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 39 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 60 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 61 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 62 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 63 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 64 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 65 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 66 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 67 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 68 | 3300035091 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 | Metagenome | Rhizosphere |
| 69 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 70 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 71 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 72 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 73 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 74 | 3300041491 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG | Metagenome | Unclassified |
| 75 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 76 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300048091 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 81 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 82 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 83 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 84 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 85 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 86 | 3300053100 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere | Metagenome | Endosphere |
| 87 | 2501939600 | Micromonospora sp. L5 | Isolate | Unclassified |
| 88 | 2515154088 | Salinispora arenicola CNT800 | Isolate | Rhizosphere |
| 89 | 2515154137 | Salinispora arenicola CNX482 | Isolate | Rhizosphere |
| 90 | 2515154202 | Salinispora pacifica CNT084 | Isolate | Rhizosphere |
| 91 | 2515154203 | Salinispora arenicola CNR921 | Isolate | Rhizosphere |
| 92 | 2622736626 | Micromonospora rhizosphaerae DSM 45431 | Isolate | Rhizosphere |
| 93 | 2675903059 | Asanoa hainanensis CGMCC 4.5593 | Isolate | Rhizosphere |
| 94 | 2772190715 | Micromonospora chokoriensis NRRL B-24750 | Isolate | Unclassified |
| 95 | 2831935698 | Jishengella sp. AZ1-13 | Isolate | Unclassified |
| 96 | 2832004796 | Micromonospora endophytica JCM 18317 | Isolate | Unclassified |
| 97 | 2855670206 | Micromonospora noduli Lupac 07 | Isolate | Nodule |
| 98 | 2855676851 | Micromonospora saelicesensis GAR05 | Isolate | Unclassified |
| 99 | 2856858025 | Micromonospora aurantiaca 110B(2018) | Isolate | Unclassified |
| 100 | 2857288857 | Micromonospora noduli ONO23 | Isolate | Unclassified |
| 101 | 2858848962 | Micromonospora saelicesensis GAR06 | Isolate | Unclassified |
| 102 | 2858868258 | Micromonospora sp. MH33 | Isolate | Unclassified |
| 103 | 2858882152 | Micromonospora noduli MED15 | Isolate | Nodule |
| 104 | 2858888857 | Micromonospora saelicesensis Lupac 06 | Isolate | Unclassified |
| 105 | 2858895516 | Micromonospora saelicesensis PSN13 | Isolate | Unclassified |
| 106 | 2858902515 | Micromonospora sp. MW-13 | Isolate | Rhizosphere |
| 107 | 2866065130 | Micromonospora endophytica DSM 45430 | Isolate | Unclassified |
| 108 | 2867302475 | Micromonospora globbae WPS1-2 | Isolate | Unclassified |
| 109 | 2867319477 | Micromonospora musae MS1-9 | Isolate | Unclassified |
| 110 | 2867507094 | Micromonospora zingiberis PLAI 1-1 | Isolate | Unclassified |
| 111 | 2869048445 | Micromonospora saelicesensis PSN01 | Isolate | Unclassified |
| 112 | 2869061728 | Micromonospora noduli ONO86 | Isolate | Unclassified |
| 113 | 2869068681 | Micromonospora noduli GUI43 | Isolate | Unclassified |
| 114 | 2880489317 | Micromonospora ureilytica DSM 101692 | Isolate | Unclassified |
| 115 | 2880495981 | Micromonospora vinacea DSM 101695 | Isolate | Unclassified |
| 116 | 2887478801 | Catellatospora paridis NEAU-CL2 | Isolate | Rhizosphere |
| 117 | 2902582711 | Micromonospora sp. AP08 | Isolate | Unclassified |
| 118 | 2929219909 | Micromonospora sp. R-75348 Hybrid assembly | Isolate | Unclassified |
| 119 | 2929226422 | Micromonospora sp. R-74116 Hybrid assembly | Isolate | Unclassified |
| 120 | 2996221748 | Micromonospora veneta CAP181 | Isolate | Unclassified |
| 121 | 649633069 | Micromonospora sp. L5 | Isolate | Unclassified |
| 122 | 8001781756 | Catellatospora tritici NEAU-YM18 | Isolate | Rhizosphere |
| 123 | 8003830390 | Micromonospora parastrephiae STR1_7 | Isolate | Rhizosphere |
| 124 | 8003856774 | Micromonospora echinofusca MPMI6 | Isolate | Unclassified |
| 125 | 8003870546 | Micromonospora tarensis STR1s_6 | Isolate | Rhizosphere |
| 126 | 8054704163 | Micromonospora trifolii NIE79 | Isolate | Nodule |
| 127 | 8054727385 | Micromonospora alfalfae MED01 | Isolate | Nodule |
| 128 | 8054734606 | Micromonospora hortensis NIE111 | Isolate | Nodule |
| 129 | 8055412473 | Micromonospora phytophila DSM 105363 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 74.86 |
| Metatranscriptomes | 0 |
| Isolates | 25.14 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0.57 |
| Nodule | 3.43 |
| Rhizoplane | 0 |
| Rhizosphere | 78.86 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0114129_10023034 | 3300009147 | Bacteria | 8836 |
| 2 | JGI25406J46586_10008462 | 3300003203 | Bacteria | 4659 |
| 3 | Ga0070658_10104422 | 3300005327 | Bacteria | 2344 |
| 4 | Ga0070683_100004610 | 3300005329 | Bacteria | 11384 |
| 5 | Ga0070683_100028260 | 3300005329 | Bacteria | 5067 |
| 6 | Ga0070683_100199827 | 3300005329 | Bacteria | 1898 |
| 7 | Ga0068869_100428209 | 3300005334 | Bacteria | 1093 |
| 8 | Ga0070682_100156505 | 3300005337 | Bacteria | 1569 |
| 9 | Ga0070660_100020197 | 3300005339 | Bacteria | 4892 |
| 10 | Ga0070661_100101676 | 3300005344 | Bacteria | 2139 |
| 11 | Ga0070692_10023367 | 3300005345 | Bacteria | 3029 |
| 12 | Ga0070675_100005336 | 3300005354 | Bacteria | 9827 |
| 13 | Ga0070659_100270454 | 3300005366 | Bacteria | 1412 |
| 14 | Ga0070714_100055928 | 3300005435 | Bacteria | 3374 |
| 15 | Ga0070663_100003680 | 3300005455 | Bacteria | 8889 |
| 16 | Ga0070678_100212049 | 3300005456 | Bacteria | 1605 |
| 17 | Ga0070662_100069200 | 3300005457 | Bacteria | 2597 |
| 18 | Ga0070681_10084694 | 3300005458 | Bacteria | 3122 |
| 19 | Ga0070679_100054409 | 3300005530 | Bacteria | 3984 |
| 20 | Ga0070684_100001585 | 3300005535 | Bacteria | 16418 |
| 21 | Ga0070684_100070512 | 3300005535 | Bacteria | 3075 |
| 22 | Ga0070664_100009119 | 3300005564 | Bacteria | 8053 |
| 23 | Ga0070664_100082239 | 3300005564 | Bacteria | 2777 |
| 24 | Ga0070664_100111281 | 3300005564 | Bacteria | 2390 |
| 25 | Ga0068857_100032139 | 3300005577 | Bacteria | 4640 |
| 26 | Ga0068852_100023315 | 3300005616 | Bacteria | 4981 |
| 27 | Ga0068859_100131838 | 3300005617 | Bacteria | 2571 |
| 28 | Ga0068870_10207574 | 3300005840 | Bacteria | 1191 |
| 29 | Ga0068858_100062828 | 3300005842 | Bacteria | 3434 |
| 30 | Ga0068860_100030308 | 3300005843 | Bacteria | 5204 |
| 31 | Ga0068862_100018359 | 3300005844 | Bacteria | 5824 |
| 32 | Ga0081540_1011236 | 3300005983 | Bacteria | 6000 |
| 33 | Ga0081539_10000930 | 3300005985 | Bacteria | 54982 |
| 34 | Ga0075428_100068570 | 3300006844 | Bacteria | 3880 |
| 35 | Ga0075428_100386649 | 3300006844 | Bacteria | 1500 |
| 36 | Ga0075428_100562942 | 3300006844 | Bacteria | 1218 |
| 37 | Ga0075430_100021138 | 3300006846 | Bacteria | 5534 |
| 38 | Ga0075430_100067428 | 3300006846 | Bacteria | 3004 |
| 39 | Ga0075430_100137996 | 3300006846 | Bacteria | 2031 |
| 40 | Ga0075430_100174734 | 3300006846 | Bacteria | 1787 |
| 41 | Ga0075431_100111417 | 3300006847 | Bacteria | 2824 |
| 42 | Ga0075431_100206378 | 3300006847 | Bacteria | 2009 |
| 43 | Ga0075429_100034760 | 3300006880 | Bacteria | 4380 |
| 44 | Ga0075429_100193589 | 3300006880 | Bacteria | 1781 |
| 45 | Ga0075429_100245079 | 3300006880 | Bacteria | 1569 |
| 46 | Ga0097620_100131842 | 3300006931 | Bacteria | 2571 |
| 47 | Ga0111539_10000821 | 3300009094 | Bacteria | 40288 |
| 48 | Ga0105245_10353041 | 3300009098 | Bacteria | 1457 |
| 49 | Ga0114129_10005838 | 3300009147 | Bacteria | 17436 |
| 50 | Ga0114129_10009013 | 3300009147 | Bacteria | 14229 |
| 51 | Ga0114129_10331659 | 3300009147 | Bacteria | 2020 |
| 52 | Ga0114129_10391233 | 3300009147 | Bacteria | 1834 |
| 53 | Ga0105243_10393532 | 3300009148 | Bacteria | 1285 |
| 54 | Ga0105241_10142541 | 3300009174 | Bacteria | 1953 |
| 55 | Ga0105239_10188026 | 3300010375 | Bacteria | 2312 |
| 56 | Ga0157369_10005779 | 3300013105 | Bacteria | 14380 |
| 57 | Ga0157377_10024496 | 3300014745 | Bacteria | 3208 |
| 58 | Ga0207705_10031588 | 3300025909 | Bacteria | 3781 |
| 59 | Ga0207657_10041932 | 3300025919 | Bacteria | 4042 |
| 60 | Ga0207652_10048716 | 3300025921 | Bacteria | 3623 |
| 61 | Ga0207687_10270630 | 3300025927 | Bacteria | 1358 |
| 62 | Ga0207664_10107324 | 3300025929 | Bacteria | 2316 |
| 63 | Ga0207690_10041768 | 3300025932 | Bacteria | 3007 |
| 64 | Ga0207690_10283379 | 3300025932 | Bacteria | 1291 |
| 65 | Ga0207706_10011306 | 3300025933 | Bacteria | 8133 |
| 66 | Ga0207709_10142611 | 3300025935 | Bacteria | 1649 |
| 67 | Ga0207661_10008979 | 3300025944 | Bacteria | 7161 |
| 68 | Ga0207661_10013377 | 3300025944 | Bacteria | 5993 |
| 69 | Ga0207661_10013563 | 3300025944 | Bacteria | 5952 |
| 70 | Ga0207679_10003060 | 3300025945 | Bacteria | 10356 |
| 71 | Ga0207679_10082736 | 3300025945 | Bacteria | 2458 |
| 72 | Ga0207668_10005493 | 3300025972 | Bacteria | 7470 |
| 73 | Ga0207703_10021343 | 3300026035 | Bacteria | 5070 |
| 74 | Ga0207678_10011208 | 3300026067 | Bacteria | 7875 |
| 75 | Ga0207708_10038488 | 3300026075 | Bacteria | 3644 |
| 76 | Ga0207702_10511351 | 3300026078 | Bacteria | 1172 |
| 77 | Ga0207683_10175366 | 3300026121 | Bacteria | 1943 |
| 78 | Ga0207698_10032636 | 3300026142 | Bacteria | 3775 |
| 79 | Ga0268265_10046754 | 3300028380 | Bacteria | 3237 |
| 80 | Ga0307509_10053689 | 3300031507 | Bacteria | 4295 |
| 81 | Ga0307408_100324916 | 3300031548 | Bacteria | 1297 |
| 82 | Ga0307508_10003664 | 3300031616 | Bacteria | 15401 |
| 83 | Ga0307405_10004862 | 3300031731 | Bacteria | 6414 |
| 84 | Ga0307405_10033660 | 3300031731 | Bacteria | 3042 |
| 85 | Ga0307410_10019237 | 3300031852 | Bacteria | 4149 |
| 86 | Ga0307406_10008839 | 3300031901 | Bacteria | 5629 |
| 87 | Ga0307406_10010983 | 3300031901 | Bacteria | 5125 |
| 88 | Ga0307406_10038964 | 3300031901 | Bacteria | 2945 |
| 89 | Ga0307406_10298195 | 3300031901 | Bacteria | 1237 |
| 90 | Ga0307406_10439542 | 3300031901 | Bacteria | 1044 |
| 91 | Ga0307416_100000580 | 3300032002 | Bacteria | 18794 |
| 92 | Ga0307416_100007854 | 3300032002 | Bacteria | 6822 |
| 93 | Ga0307411_10324386 | 3300032005 | Bacteria | 1245 |
| 94 | Ga0307415_100000093 | 3300032126 | Bacteria | 37368 |
| 95 | Ga0307415_100000169 | 3300032126 | Bacteria | 28958 |
| 96 | Ga0307415_100059583 | 3300032126 | Bacteria | 2634 |
| 97 | Ga0307415_100485830 | 3300032126 | Bacteria | 1076 |
| 98 | Ga0373951_0001663 | 3300035091 | Bacteria | 5827 |
| 99 | Ga0395899_0038843 | 3300037312 | Bacteria | 3564 |
| 100 | Ga0395900_0067421 | 3300037418 | Bacteria | 3676 |
| 101 | Ga0395898_0011651 | 3300037466 | Bacteria | 9122 |
| 102 | Ga0395905_0117675 | 3300037471 | Bacteria | 2497 |
| 103 | Ga0395901_0122535 | 3300038443 | Bacteria | 2732 |
| 104 | Ga0451833_0586343 | 3300041491 | Bacteria | 989 |
| 105 | Ga0451853_1101264 | 3300041512 | Bacteria | 2144 |
| 106 | Ga0495606_0001111 | 3300046507 | Bacteria | 38436 |
| 107 | Ga0495668_0000523 | 3300046616 | Bacteria | 47819 |
| 108 | Ga0495668_0000627 | 3300046616 | Bacteria | 42535 |
| 109 | Ga0495625_0000161 | 3300046660 | Bacteria | 103972 |
| 110 | Ga0495625_0000765 | 3300046660 | Bacteria | 44823 |
| 111 | Ga0495626_0000051 | 3300048091 | Bacteria | 156449 |
| 112 | Ga0495626_0000106 | 3300048091 | Bacteria | 109700 |
| 113 | Ga0501047_0030648 | 3300049581 | Bacteria | 5185 |
| 114 | nmdc:mga05p37_10604_c1 | 3300050507 | Bacteria | 10930 |
| 115 | nmdc:mga05p37_125016_c1 | 3300050507 | Bacteria | 3159 |
| 116 | nmdc:mga05p37_29845_c1 | 3300050507 | Bacteria | 6654 |
| 117 | nmdc:mga05p37_339802_c1 | 3300050507 | Bacteria | 1771 |
| 118 | nmdc:mga05p37_36312_c1 | 3300050507 | Bacteria | 6046 |
| 119 | nmdc:mga05p37_83799_c1 | 3300050507 | Bacteria | 3928 |
| 120 | nmdc:mga05p37_95141_c1 | 3300050507 | Bacteria | 3670 |
| 121 | nmdc:mga09592_106388_c1 | 3300050508 | Bacteria | 2406 |
| 122 | nmdc:mga09592_2_c1 | 3300050508 | Bacteria | 168133 |
| 123 | nmdc:mga09592_303381_c1 | 3300050508 | Bacteria | 1384 |
| 124 | nmdc:mga09592_44754_c1 | 3300050508 | Bacteria | 3727 |
| 125 | nmdc:mga09592_473221_c1 | 3300050508 | Bacteria | 1080 |
| 126 | nmdc:mga0qj67_10_c1 | 3300050509 | Bacteria | 83362 |
| 127 | nmdc:mga0qj67_119535_c1 | 3300050509 | Bacteria | 2131 |
| 128 | nmdc:mga0qj67_315363_c1 | 3300050509 | Bacteria | 1266 |
| 129 | nmdc:mga06r32_6894_c1 | 3300050510 | Bacteria | 10214 |
| 130 | nmdc:mga08y16_9154_c1 | 3300050511 | Bacteria | 10394 |
| 131 | Ga0500660_025685 | 3300053100 | Bacteria | 3109 |
| 132 | 2501942379 | 2501939600 | Bacteria | 6907073 |
| 133 | 2515495647 | 2515154088 | Bacteria | 5526283 |
| 134 | 2515756383 | 2515154137 | Bacteria | 5711575 |
| 135 | 2516084343 | 2515154202 | Bacteria | 5471270 |
| 136 | 2516090973 | 2515154203 | Bacteria | 5458536 |
| 137 | 2623586047 | 2622736626 | Bacteria | 7181580 |
| 138 | 2676482741 | 2675903059 | Bacteria | 8644972 |
| 139 | 2772646830 | 2772190715 | Bacteria | 6959372 |
| 140 | 2831940802 | 2831935698 | Bacteria | 5963223 |
| 141 | 2832005678 | 2832004796 | Bacteria | 6538017 |
| 142 | 2855671779 | 2855670206 | Bacteria | 7120389 |
| 143 | 2855676864 | 2855676851 | Bacteria | 7063653 |
| 144 | 2856859910 | 2856858025 | Bacteria | 7255264 |
| 145 | 2857292873 | 2857288857 | Bacteria | 7189066 |
| 146 | 2858852427 | 2858848962 | Bacteria | 6963058 |
| 147 | 2858870984 | 2858868258 | Bacteria | 7683772 |
| 148 | 2858887826 | 2858882152 | Bacteria | 7230291 |
| 149 | 2858895204 | 2858888857 | Bacteria | 7060307 |
| 150 | 2858898799 | 2858895516 | Bacteria | 7378898 |
| 151 | 2858904684 | 2858902515 | Bacteria | 7086037 |
| 152 | 2866065502 | 2866065130 | Bacteria | 6518152 |
| 153 | 2867304469 | 2867302475 | Bacteria | 7087181 |
| 154 | 2867324674 | 2867319477 | Bacteria | 7069771 |
| 155 | 2867510151 | 2867507094 | Bacteria | 6506033 |
| 156 | 2869048703 | 2869048445 | Bacteria | 6875584 |
| 157 | 2869061772 | 2869061728 | Bacteria | 7112407 |
| 158 | 2869071028 | 2869068681 | Bacteria | 7205615 |
| 159 | 2880494243 | 2880489317 | Bacteria | 7096270 |
| 160 | 2880498085 | 2880495981 | Bacteria | 7340502 |
| 161 | 2887483248 | 2887478801 | Bacteria | 8972725 |
| 162 | 2902587620 | 2902582711 | Bacteria | 6187705 |
| 163 | 2929220123 | 2929219909 | Bacteria | 6984360 |
| 164 | 2929226647 | 2929226422 | Bacteria | 7248583 |
| 165 | 2996226098 | 2996221748 | Bacteria | 6799777 |
| 166 | 649810395 | 649633069 | Bacteria | 6962533 |
| 167 | 8001783864 | 8001781756 | Bacteria | 9586736 |
| 168 | 8001786554 | 8001781756 | Bacteria | 9586736 |
| 169 | 8003832837 | 8003830390 | Bacteria | 6541657 |
| 170 | 8003859137 | 8003856774 | Bacteria | 7675274 |
| 171 | 8003870782 | 8003870546 | Bacteria | 7396674 |
| 172 | 8054705523 | 8054704163 | Bacteria | 7247792 |
| 173 | 8054733500 | 8054727385 | Bacteria | 7558670 |
| 174 | 8054737182 | 8054734606 | Bacteria | 6947278 |
| 175 | 8055414350 | 8055412473 | Bacteria | 6257500 |
| 176 | Ga0114129_10023034 | |||
| 177 | JGI25406J46586_10008462 | |||
| 178 | Ga0070658_10104422 | |||
| 179 | Ga0070683_100004610 | |||
| 180 | Ga0070683_100028260 | |||
| 181 | Ga0070683_100199827 | |||
| 182 | Ga0068869_100428209 | |||
| 183 | Ga0070682_100156505 | |||
| 184 | Ga0070660_100020197 | |||
| 185 | Ga0070661_100101676 | |||
| 186 | Ga0070692_10023367 | |||
| 187 | Ga0070675_100005336 | |||
| 188 | Ga0070659_100270454 | |||
| 189 | Ga0070714_100055928 | |||
| 190 | Ga0070663_100003680 | |||
| 191 | Ga0070678_100212049 | |||
| 192 | Ga0070662_100069200 | |||
| 193 | Ga0070681_10084694 | |||
| 194 | Ga0070679_100054409 | |||
| 195 | Ga0070684_100001585 | |||
| 196 | Ga0070684_100070512 | |||
| 197 | Ga0070664_100009119 | |||
| 198 | Ga0070664_100082239 | |||
| 199 | Ga0070664_100111281 | |||
| 200 | Ga0068857_100032139 | |||
| 201 | Ga0068852_100023315 | |||
| 202 | Ga0068859_100131838 | |||
| 203 | Ga0068870_10207574 | |||
| 204 | Ga0068858_100062828 | |||
| 205 | Ga0068860_100030308 | |||
| 206 | Ga0068862_100018359 | |||
| 207 | Ga0081540_1011236 | |||
| 208 | Ga0081539_10000930 | |||
| 209 | Ga0075428_100068570 | |||
| 210 | Ga0075428_100386649 | |||
| 211 | Ga0075428_100562942 | |||
| 212 | Ga0075430_100021138 | |||
| 213 | Ga0075430_100067428 | |||
| 214 | Ga0075430_100137996 | |||
| 215 | Ga0075430_100174734 | |||
| 216 | Ga0075431_100111417 | |||
| 217 | Ga0075431_100206378 | |||
| 218 | Ga0075429_100034760 | |||
| 219 | Ga0075429_100193589 | |||
| 220 | Ga0075429_100245079 | |||
| 221 | Ga0097620_100131842 | |||
| 222 | Ga0111539_10000821 | |||
| 223 | Ga0105245_10353041 | |||
| 224 | Ga0114129_10005838 | |||
| 225 | Ga0114129_10009013 | |||
| 226 | Ga0114129_10331659 | |||
| 227 | Ga0114129_10391233 | |||
| 228 | Ga0105243_10393532 | |||
| 229 | Ga0105241_10142541 | |||
| 230 | Ga0105239_10188026 | |||
| 231 | Ga0157369_10005779 | |||
| 232 | Ga0157377_10024496 | |||
| 233 | Ga0207705_10031588 | |||
| 234 | Ga0207657_10041932 | |||
| 235 | Ga0207652_10048716 | |||
| 236 | Ga0207687_10270630 | |||
| 237 | Ga0207664_10107324 | |||
| 238 | Ga0207690_10041768 | |||
| 239 | Ga0207690_10283379 | |||
| 240 | Ga0207706_10011306 | |||
| 241 | Ga0207709_10142611 | |||
| 242 | Ga0207661_10008979 | |||
| 243 | Ga0207661_10013377 | |||
| 244 | Ga0207661_10013563 | |||
| 245 | Ga0207679_10003060 | |||
| 246 | Ga0207679_10082736 | |||
| 247 | Ga0207668_10005493 | |||
| 248 | Ga0207703_10021343 | |||
| 249 | Ga0207678_10011208 | |||
| 250 | Ga0207708_10038488 | |||
| 251 | Ga0207702_10511351 | |||
| 252 | Ga0207683_10175366 | |||
| 253 | Ga0207698_10032636 | |||
| 254 | Ga0268265_10046754 | |||
| 255 | Ga0307509_10053689 | |||
| 256 | Ga0307408_100324916 | |||
| 257 | Ga0307508_10003664 | |||
| 258 | Ga0307405_10004862 | |||
| 259 | Ga0307405_10033660 | |||
| 260 | Ga0307410_10019237 | |||
| 261 | Ga0307406_10008839 | |||
| 262 | Ga0307406_10010983 | |||
| 263 | Ga0307406_10038964 | |||
| 264 | Ga0307406_10298195 | |||
| 265 | Ga0307406_10439542 | |||
| 266 | Ga0307416_100000580 | |||
| 267 | Ga0307416_100007854 | |||
| 268 | Ga0307411_10324386 | |||
| 269 | Ga0307415_100000093 | |||
| 270 | Ga0307415_100000169 | |||
| 271 | Ga0307415_100059583 | |||
| 272 | Ga0307415_100485830 | |||
| 273 | Ga0373951_0001663 | |||
| 274 | Ga0395899_0038843 | |||
| 275 | Ga0395900_0067421 | |||
| 276 | Ga0395898_0011651 | |||
| 277 | Ga0395905_0117675 | |||
| 278 | Ga0395901_0122535 | |||
| 279 | Ga0451833_0586343 | |||
| 280 | Ga0451853_1101264 | |||
| 281 | Ga0495606_0001111 | |||
| 282 | Ga0495668_0000523 | |||
| 283 | Ga0495668_0000627 | |||
| 284 | Ga0495625_0000161 | |||
| 285 | Ga0495625_0000765 | |||
| 286 | Ga0495626_0000051 | |||
| 287 | Ga0495626_0000106 | |||
| 288 | Ga0501047_0030648 | |||
| 289 | nmdc:mga05p37_10604_c1 | |||
| 290 | nmdc:mga05p37_125016_c1 | |||
| 291 | nmdc:mga05p37_29845_c1 | |||
| 292 | nmdc:mga05p37_339802_c1 | |||
| 293 | nmdc:mga05p37_36312_c1 | |||
| 294 | nmdc:mga05p37_83799_c1 | |||
| 295 | nmdc:mga05p37_95141_c1 | |||
| 296 | nmdc:mga09592_106388_c1 | |||
| 297 | nmdc:mga09592_2_c1 | |||
| 298 | nmdc:mga09592_303381_c1 | |||
| 299 | nmdc:mga09592_44754_c1 | |||
| 300 | nmdc:mga09592_473221_c1 | |||
| 301 | nmdc:mga0qj67_10_c1 | |||
| 302 | nmdc:mga0qj67_119535_c1 | |||
| 303 | nmdc:mga0qj67_315363_c1 | |||
| 304 | nmdc:mga06r32_6894_c1 | |||
| 305 | nmdc:mga08y16_9154_c1 | |||
| 306 | Ga0500660_025685 | |||
| 307 | 2501942379 | |||
| 308 | 2515495647 | |||
| 309 | 2515756383 | |||
| 310 | 2516084343 | |||
| 311 | 2516090973 | |||
| 312 | 2623586047 | |||
| 313 | 2676482741 | |||
| 314 | 2772646830 | |||
| 315 | 2831940802 | |||
| 316 | 2832005678 | |||
| 317 | 2855671779 | |||
| 318 | 2855676864 | |||
| 319 | 2856859910 | |||
| 320 | 2857292873 | |||
| 321 | 2858852427 | |||
| 322 | 2858870984 | |||
| 323 | 2858887826 | |||
| 324 | 2858895204 | |||
| 325 | 2858898799 | |||
| 326 | 2858904684 | |||
| 327 | 2866065502 | |||
| 328 | 2867304469 | |||
| 329 | 2867324674 | |||
| 330 | 2867510151 | |||
| 331 | 2869048703 | |||
| 332 | 2869061772 | |||
| 333 | 2869071028 | |||
| 334 | 2880494243 | |||
| 335 | 2880498085 | |||
| 336 | 2887483248 | |||
| 337 | 2902587620 | |||
| 338 | 2929220123 | |||
| 339 | 2929226647 | |||
| 340 | 2996226098 | |||
| 341 | 649810395 | |||
| 342 | 8001783864 | |||
| 343 | 8001786554 | |||
| 344 | 8003832837 | |||
| 345 | 8003859137 | |||
| 346 | 8003870782 | |||
| 347 | 8054705523 | |||
| 348 | 8054733500 | |||
| 349 | 8054737182 | |||
| 350 | 8055414350 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5iys-assembly1.cif.gz_A | crystal structure of a dehydrosqualene synthase in complex with ligand | 0.9402 | 5 | 286 |
| 3we9-assembly1.cif.gz_A | the crystal structure of yisp from bacillus subtilis subsp. subtilis strain 168 | 0.9145 | 4 | 284 |
| 5iys-assembly1.cif.gz_A | crystal structure of a dehydrosqualene synthase in complex with ligand | 0.8988 | 5 | 286 |
| 4hd1-assembly1.cif.gz_A | crystal structure of squalene synthase hpnc from alicyclobacillus acidocaldarius | 0.896 | 1 | 266 |
| 3we9-assembly1.cif.gz_A | the crystal structure of yisp from bacillus subtilis subsp. subtilis strain 168 | 0.8801 | 4 | 284 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q330K2_57_309_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9325 | 9 | 268 | 1.10.600.10 |
| af_Q330K2_57_309_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9255 | 9 | 268 | 1.10.600.10 |
| af_P9WHP3_1_280_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9189 | 4 | 287 | 1.10.600.10 |
| 3we9A00 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9145 | 4 | 284 | 1.10.600.10 |
| af_P9WHP3_1_280_1.10.600.10 | Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase | 0.9064 | 4 | 287 | 1.10.600.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A6F8YZ02-F1-model_v4 | Uncharacterized protein | 0.9951 | 92 | 303 |
GO:0008299
GO:0016765 |
| AF-R4LEG7-F1-model_v4 | Phytoene synthase | 0.9896 | 39 | 296 |
GO:0004311
GO:0016117 GO:0051996 |
| AF-A0A6F8YZ02-F1-model_v4 | Uncharacterized protein | 0.9858 | 92 | 303 |
GO:0008299
GO:0016765 |
| AF-A0A6V8L5S9-F1-model_v4 | Phytoene synthase | 0.9836 | 1 | 288 |
GO:0004311
GO:0016117 GO:0051996 |
| AF-A0A238VS64-F1-model_v4 | Phytoene synthase | 0.9813 | 5 | 288 |
GO:0004311
GO:0016117 GO:0051996 |