F265958

General Info

Members Datasets Scaffolds Average Seq Length
175 115 175 406

Family's Representative Sequence

Representative Sequence 3300005535|Ga0070684_100034434|Ga0070684_1000344345
Length 422
Sequence MRFSYKALTKEGKTISGEFEAVDRSALIAALNKQGAHPLTITVETGSKKSASGLDKLFQPKVKLRDLVIFTRQLSTLISAGVPLPRSLATLQQQAENKYFKKVIGDIAKDVESGTSLGASFAKFPDVFSEVYINMVKAGESGGILDEILKRLASQAEKDATIRKKVKGAMTYPAVIFSVTIIAFFGLMLFVVPQIGKILKSLSGGHAKLPIYTEVLLDISAFCTSTSVIQHIPLLNINIIFIFIAMGIGGYFLSKYVKTPKGKYRLHALLLRVPVVKDIITKVAIARFARTFSALTSAGVTVLDALEVTGSAIGNKVIEAELTEAAEQVKNGKALSEPLSKSRIFPPIVSQMIAVGEETGQIDKILVKIADFYEEDVDTLIDGISSIIEPVMIIVLGGMIGLIALSVMGPIASLSTSVSANG

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
30 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
34 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
63 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
64 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
65 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
66 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
75 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
76 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
77 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
78 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
79 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
80 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
81 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
84 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
85 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
92 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
93 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
94 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
95 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
96 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
97 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
98 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
99 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
100 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
101 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
102 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
103 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
104 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
105 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
106 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
107 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
108 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
109 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
110 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
111 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
112 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
113 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
114 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
115 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.71
Nodule 0
Rhizoplane 0
Rhizosphere 72
Stem 0
Stem Tuber 0
Unclassified 2.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000674 3300001979 Bacteria 14809
2 JGI24740J21852_10006735 3300001979 Bacteria 4728
3 JGI24740J21852_10031532 3300001979 Bacteria 1708
4 JGI24737J22298_10000043 3300001990 Bacteria 36744
5 JGI24735J21928_10000104 3300002067 Bacteria 31029
6 JGI24738J21930_10000355 3300002075 Bacteria 12706
7 rootH1_10012137 3300003323 Bacteria 62005
8 Ga0070658_10000009 3300005327 Bacteria 319868
9 Ga0070683_100112914 3300005329 Unclassified 2564
10 Ga0070660_100000386 3300005339 Bacteria 29414
11 Ga0070660_100066150 3300005339 Bacteria 2813
12 Ga0070661_100002809 3300005344 Bacteria 11954
13 Ga0070661_100008374 3300005344 Bacteria 7145
14 Ga0070675_100079277 3300005354 Unclassified 2736
15 Ga0070674_100000916 3300005356 Bacteria 15390
16 Ga0070659_100009782 3300005366 Bacteria 7048
17 Ga0070662_100003531 3300005457 Bacteria 9750
18 Ga0070684_100034434 3300005535 Unclassified 4331
19 Ga0070684_100068731 3300005535 Bacteria 3114
20 Ga0068855_100000005 3300005563 Bacteria 337711
21 Ga0068855_100001696 3300005563 Bacteria 27546
22 Ga0068855_100237626 3300005563 Unclassified 2037
23 Ga0070664_100000721 3300005564 Bacteria 25354
24 Ga0068857_100000057 3300005577 Bacteria 62388
25 Ga0068857_100000066 3300005577 Bacteria 59014
26 Ga0068854_100069246 3300005578 Bacteria 2575
27 Ga0068856_100000122 3300005614 Bacteria 78134
28 Ga0068852_100000001 3300005616 Bacteria 716526
29 Ga0068852_100000011 3300005616 Bacteria 141147
30 Ga0081455_10000001 3300005937 Bacteria 603871
31 Ga0075365_10000083 3300006038 Bacteria 27773
32 Ga0075365_10004293 3300006038 Bacteria 7522
33 Ga0075365_10004739 3300006038 Bacteria 7250
34 Ga0075365_10043727 3300006038 Bacteria 2933
35 Ga0075365_10106986 3300006038 Bacteria 1920
36 Ga0075368_10000058 3300006042 Bacteria 26490
37 Ga0075364_10008657 3300006051 Bacteria 6083
38 Ga0075364_10013445 3300006051 Bacteria 5032
39 Ga0075367_10001371 3300006178 Bacteria 10390
40 Ga0075367_10012398 3300006178 Bacteria 4544
41 Ga0075369_10000003 3300006186 Bacteria 205269
42 Ga0075369_10003846 3300006186 Bacteria 5508
43 Ga0075428_100000608 3300006844 Bacteria 36522
44 Ga0105240_10000030 3300009093 Bacteria 321312
45 Ga0105240_10000554 3300009093 Bacteria 69214
46 Ga0105241_10003626 3300009174 Bacteria 11470
47 Ga0105241_10035700 3300009174 Bacteria 3739
48 Ga0105242_10004294 3300009176 Bacteria 11104
49 Ga0105237_10000001 3300009545 Bacteria 1009213
50 Ga0105237_10000002 3300009545 Bacteria 702357
51 Ga0105238_10001341 3300009551 Bacteria 24723
52 Ga0105032_100002 3300009979 Bacteria 303884
53 Ga0105028_104909 3300009993 Bacteria 1393
54 Ga0105239_10001282 3300010375 Bacteria 33954
55 Ga0105239_10001890 3300010375 Bacteria 27386
56 Ga0105246_10000260 3300011119 Bacteria 27386
57 Ga0105246_10002745 3300011119 Bacteria 10652
58 Ga0105246_10002918 3300011119 Bacteria 10347
59 Ga0157373_10006247 3300013100 Bacteria 8901
60 Ga0157373_10010923 3300013100 Bacteria 6685
61 Ga0157373_10013605 3300013100 Bacteria 5969
62 Ga0157371_10001505 3300013102 Bacteria 24083
63 Ga0157370_10000866 3300013104 Bacteria 38387
64 Ga0157370_10001133 3300013104 Bacteria 33303
65 Ga0157370_10001378 3300013104 Bacteria 30046
66 Ga0157369_10000003 3300013105 Bacteria 507337
67 Ga0157369_10000026 3300013105 Bacteria 216023
68 Ga0157369_10000055 3300013105 Bacteria 161739
69 Ga0157369_10000634 3300013105 Bacteria 45464
70 Ga0157369_10005355 3300013105 Bacteria 14949
71 Ga0157369_10015155 3300013105 Bacteria 8702
72 Ga0157369_10334525 3300013105 Bacteria 1573
73 Ga0157374_10007123 3300013296 Bacteria 9524
74 Ga0157372_10000007 3300013307 Bacteria 340690
75 Ga0157372_10000106 3300013307 Bacteria 87935
76 Ga0157372_10212276 3300013307 Bacteria 2243
77 Ga0163163_10143229 3300014325 Unclassified 2433
78 Ga0157377_10000500 3300014745 Bacteria 16685
79 Ga0157376_10000085 3300014969 Bacteria 70910
80 Ga0157376_10046120 3300014969 Bacteria 3592
81 Ga0207647_10001626 3300025904 Bacteria 17272
82 Ga0207705_10000010 3300025909 Bacteria 518023
83 Ga0207695_10000009 3300025913 Bacteria 1034276
84 Ga0207695_10001111 3300025913 Bacteria 46810
85 Ga0207671_10000003 3300025914 Bacteria 1065461
86 Ga0207671_10000008 3300025914 Bacteria 798229
87 Ga0207657_10000251 3300025919 Bacteria 57216
88 Ga0207657_10000959 3300025919 Bacteria 30519
89 Ga0207649_10015580 3300025920 Bacteria 4270
90 Ga0207694_10006932 3300025924 Bacteria 8602
91 Ga0207690_10019032 3300025932 Bacteria 4218
92 Ga0207706_10000004 3300025933 Bacteria 280765
93 Ga0207686_10013395 3300025934 Bacteria 4536
94 Ga0207661_10088177 3300025944 Unclassified 2578
95 Ga0207679_10000126 3300025945 Bacteria 62566
96 Ga0207667_10000027 3300025949 Bacteria 337700
97 Ga0207667_10004256 3300025949 Bacteria 17563
98 Ga0207667_10162586 3300025949 Unclassified 2296
99 Ga0207702_10000051 3300026078 Bacteria 139040
100 Ga0207702_10000431 3300026078 Bacteria 47962
101 Ga0207674_10000032 3300026116 Bacteria 142389
102 Ga0207674_10000299 3300026116 Bacteria 62812
103 Ga0207698_10000001 3300026142 Bacteria 625389
104 Ga0207698_10000024 3300026142 Bacteria 123946
105 Ga0207698_10056982 3300026142 Unclassified 3020
106 Ga0209813_10000801 3300027866 Bacteria 7133
107 Ga0265338_10001602 3300028800 Bacteria 36326
108 Ga0316183_1034383 3300030742 Bacteria 3241
109 Ga0316183_1134592 3300030742 Bacteria 11520
110 Ga0316183_1176931 3300030742 Bacteria 1741
111 Ga0316182_1069309 3300030745 Bacteria 3922
112 Ga0265342_10045254 3300031712 Unclassified 2650
113 Ga0307516_10025636 3300031730 Bacteria 6002
114 Ga0307413_10000494 3300031824 Bacteria 12967
115 Ga0307416_100369214 3300032002 Bacteria 1460
116 Ga0395900_0000001 3300037418 Bacteria 931146
117 Ga0395898_0000002 3300037466 Bacteria 931013
118 Ga0395905_0000406 3300037471 Bacteria 60907
119 Ga0395901_0000006 3300038443 Bacteria 514112
120 Ga0395901_0019234 3300038443 Bacteria 6983
121 Ga0439438_015014 3300041405 Bacteria 2290
122 Ga0439461_0000245 3300041410 Bacteria 7712
123 Ga0439445_0001423 3300042004 Bacteria 5195
124 Ga0439432_012164 3300042006 Bacteria 2951
125 Ga0439432_018819 3300042006 Bacteria 2304
126 Ga0450906_002216 3300042145 Bacteria 4252
127 Ga0439446_0000003 3300042156 Bacteria 158513
128 Ga0439446_0002433 3300042156 Bacteria 4464
129 Ga0439434_0002311 3300042435 Bacteria 5544
130 Ga0439464_0000005 3300042439 Bacteria 45669
131 Ga0466972_0040093 3300044658 Bacteria 2283
132 Ga0495638_0000061 3300046460 Bacteria 188551
133 Ga0495638_0000167 3300046460 Bacteria 102139
134 Ga0495597_0018370 3300046542 Unclassified 3281
135 Ga0495588_0019980 3300046674 Unclassified 3286
136 Ga0495660_0000005 3300046810 Bacteria 574567
137 Ga0495660_0007280 3300046810 Bacteria 6508
138 Ga0496124_0048736 3300048927 Bacteria 3618
139 Ga0496124_0145358 3300048927 Bacteria 1866
140 Ga0501034_0000028 3300049571 Bacteria 255803
141 Ga0501034_0012937 3300049571 Bacteria 8602
142 Ga0501037_0000001 3300049573 Bacteria 753276
143 Ga0501038_0015531 3300049574 Bacteria 6922
144 nmdc:mga00v17_143_c1 3300050491 Bacteria 41277
145 nmdc:mga00v17_789_c2 3300050491 Bacteria 8652
146 nmdc:mga0yw44_14_c1 3300050492 Bacteria 86738
147 nmdc:mga0yw44_4424_c1 3300050492 Bacteria 6442
148 nmdc:mga0yw44_4_c1 3300050492 Bacteria 450247
149 nmdc:mga06z11_483_c1 3300050494 Bacteria 14692
150 nmdc:mga04h51_421_c1 3300050495 Bacteria 10186
151 nmdc:mga07m45_1009_c1 3300050496 Bacteria 12437
152 nmdc:mga07m45_40512_c1 3300050496 Unclassified 2606
153 nmdc:mga0sz30_1_c1 3300050516 Bacteria 796501
154 nmdc:mga0sz30_4868_c1 3300050516 Bacteria 4890
155 Ga0500610_0001178 3300053079 Bacteria 8662
156 Ga0500643_001774 3300053087 Bacteria 11872
157 Ga0500646_0000005 3300053090 Bacteria 130895
158 Ga0500583_0000067 3300053092 Bacteria 64775
159 Ga0500583_0001922 3300053092 Bacteria 6090
160 Ga0500651_0000025 3300053093 Bacteria 123745
161 Ga0500641_0000001 3300053096 Bacteria 1115973
162 Ga0500555_000009 3300053103 Bacteria 263998
163 Ga0500562_000001 3300053108 Bacteria 1178987
164 Ga0500569_000001 3300053109 Bacteria 137852
165 Ga0500594_0000011 3300053118 Bacteria 87409
166 Ga0500642_0002556 3300053130 Bacteria 5366
167 Ga0500652_000001 3300053131 Bacteria 946868
168 Ga0500655_003187 3300053133 Bacteria 2976
169 Ga0500577_0001993 3300053142 Bacteria 5235
170 Ga0500588_0000027 3300053146 Bacteria 35097
171 Ga0500589_000008 3300053147 Bacteria 137145
172 Ga0500616_0000012 3300053153 Bacteria 681798
173 Ga0500616_0005186 3300053153 Bacteria 8934
174 Ga0500620_068583 3300053155 Bacteria 1217
175 Ga0500570_001064 3300053724 Bacteria 12042

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053155 Ga0500620_068583 Ga0500620_068583_202_1200 332
2 3300042006 Ga0439432_012164 Ga0439432_012164_1885_2907 340
3 3300046674 Ga0495588_0019980 Ga0495588_0019980_44_1066 340
4 3300032002 Ga0307416_100369214 Ga0307416_1003692141 346
5 3300014325 Ga0163163_10143229 Ga0163163_101432292 347
6 3300038443 Ga0395901_0019234 Ga0395901_0019234_5507_6790 352
7 3300031824 Ga0307413_10000494 Ga0307413_100004944 373
8 3300037471 Ga0395905_0000406 Ga0395905_0000406_34176_35399 377
9 3300005563 Ga0068855_100001696 Ga0068855_1000016967 378
10 3300025949 Ga0207667_10004256 Ga0207667_100042567 378
11 3300046810 Ga0495660_0007280 Ga0495660_0007280_4490_5707 381
12 3300053108 Ga0500562_000001 Ga0500562_000001_1062194_1063411 381
13 3300053133 Ga0500655_003187 Ga0500655_003187_1618_2835 381
14 3300053079 Ga0500610_0001178 Ga0500610_0001178_149_1435 391
15 3300053092 Ga0500583_0000067 Ga0500583_0000067_55536_56822 391
16 3300053130 Ga0500642_0002556 Ga0500642_0002556_1480_2766 391
17 3300053147 Ga0500589_000008 Ga0500589_000008_83662_84948 391
18 3300006186 Ga0075369_10000003 Ga0075369_10000003137 393
19 3300050516 nmdc:mga0sz30_1_c1 nmdc:mga0sz30_1_c1_393095_394354 393
20 3300049571 Ga0501034_0000028 Ga0501034_0000028_163234_164466 398
21 3300049573 Ga0501037_0000001 Ga0501037_0000001_27861_29093 398
22 3300049574 Ga0501038_0015531 Ga0501038_0015531_3007_4239 398
23 3300005356 Ga0070674_100000916 Ga0070674_1000009168 405
24 3300009176 Ga0105242_10004294 Ga0105242_1000429412 405
25 3300025934 Ga0207686_10013395 Ga0207686_100133952 405
26 3300006038 Ga0075365_10043727 Ga0075365_100437273 406
27 3300009979 Ga0105032_100002 Ga0105032_10000225 406
28 3300046460 Ga0495638_0000167 Ga0495638_0000167_41322_42542 406
29 3300048927 Ga0496124_0048736 Ga0496124_0048736_1151_2374 406
30 3300006038 Ga0075365_10106986 Ga0075365_101069862 407
31 3300006051 Ga0075364_10008657 Ga0075364_100086575 407
32 3300009993 Ga0105028_104909 Ga0105028_1049091 407
33 3300030742 Ga0316183_1176931 Ga0316183_11769312 407
34 3300044658 Ga0466972_0040093 Ga0466972_0040093_779_2002 407
35 3300048927 Ga0496124_0145358 Ga0496124_0145358_337_1563 407
36 3300050491 nmdc:mga00v17_789_c2 nmdc:mga00v17_789_c2_810_2033 407
37 3300050492 nmdc:mga0yw44_4424_c1 nmdc:mga0yw44_4424_c1_169_1392 407
38 3300053142 Ga0500577_0001993 Ga0500577_0001993_1099_2325 407
39 3300005535 Ga0070684_100034434 Ga0070684_1000344345 408
40 3300005577 Ga0068857_100000057 Ga0068857_10000005737 408
41 3300005616 Ga0068852_100000001 Ga0068852_100000001328 408
42 3300005937 Ga0081455_10000001 Ga0081455_10000001524 408
43 3300006038 Ga0075365_10004293 Ga0075365_1000429310 408
44 3300006038 Ga0075365_10004739 Ga0075365_100047392 408
45 3300006042 Ga0075368_10000058 Ga0075368_1000005813 408
46 3300006051 Ga0075364_10013445 Ga0075364_100134452 408
47 3300006178 Ga0075367_10001371 Ga0075367_100013717 408
48 3300009174 Ga0105241_10003626 Ga0105241_100036269 408
49 3300009545 Ga0105237_10000002 Ga0105237_10000002225 408
50 3300009551 Ga0105238_10001341 Ga0105238_100013417 408
51 3300010375 Ga0105239_10001890 Ga0105239_1000189020 408
52 3300025914 Ga0207671_10000008 Ga0207671_10000008327 408
53 3300025924 Ga0207694_10006932 Ga0207694_100069327 408
54 3300026116 Ga0207674_10000299 Ga0207674_1000029938 408
55 3300026142 Ga0207698_10000001 Ga0207698_10000001280 408
56 3300027866 Ga0209813_10000801 Ga0209813_100008014 408
57 3300028800 Ga0265338_10001602 Ga0265338_1000160227 408
58 3300030742 Ga0316183_1134592 Ga0316183_11345925 408
59 3300031712 Ga0265342_10045254 Ga0265342_100452542 408
60 3300049571 Ga0501034_0012937 Ga0501034_0012937_2349_3590 408
61 3300050491 nmdc:mga00v17_143_c1 nmdc:mga00v17_143_c1_11553_12782 408
62 3300050492 nmdc:mga0yw44_4_c1 nmdc:mga0yw44_4_c1_127963_129192 408
63 3300050494 nmdc:mga06z11_483_c1 nmdc:mga06z11_483_c1_12173_13402 408
64 3300050495 nmdc:mga04h51_421_c1 nmdc:mga04h51_421_c1_3502_4731 408
65 3300050496 nmdc:mga07m45_40512_c1 nmdc:mga07m45_40512_c1_406_1635 408
66 3300050516 nmdc:mga0sz30_4868_c1 nmdc:mga0sz30_4868_c1_406_1635 408
67 3300053153 Ga0500616_0000012 Ga0500616_0000012_201713_202939 408
68 3300001979 JGI24740J21852_10000674 JGI24740J21852_1000067413 409
69 3300001979 JGI24740J21852_10006735 JGI24740J21852_100067353 409
70 3300001979 JGI24740J21852_10031532 JGI24740J21852_100315321 409
71 3300001990 JGI24737J22298_10000043 JGI24737J22298_1000004332 409
72 3300002067 JGI24735J21928_10000104 JGI24735J21928_1000010416 409
73 3300002075 JGI24738J21930_10000355 JGI24738J21930_100003556 409
74 3300003323 rootH1_10012137 rootH1_1001213755 409
75 3300005327 Ga0070658_10000009 Ga0070658_1000000934 409
76 3300005329 Ga0070683_100112914 Ga0070683_1001129143 409
77 3300005339 Ga0070660_100000386 Ga0070660_1000003868 409
78 3300005339 Ga0070660_100066150 Ga0070660_1000661502 409
79 3300005344 Ga0070661_100002809 Ga0070661_1000028099 409
80 3300005344 Ga0070661_100008374 Ga0070661_1000083749 409
81 3300005354 Ga0070675_100079277 Ga0070675_1000792772 409
82 3300005366 Ga0070659_100009782 Ga0070659_1000097822 409
83 3300005457 Ga0070662_100003531 Ga0070662_1000035312 409
84 3300005535 Ga0070684_100068731 Ga0070684_1000687312 409
85 3300005563 Ga0068855_100000005 Ga0068855_100000005189 409
86 3300005563 Ga0068855_100237626 Ga0068855_1002376262 409
87 3300005564 Ga0070664_100000721 Ga0070664_1000007219 409
88 3300005577 Ga0068857_100000066 Ga0068857_10000006624 409
89 3300005578 Ga0068854_100069246 Ga0068854_1000692462 409
90 3300005614 Ga0068856_100000122 Ga0068856_10000012265 409
91 3300005616 Ga0068852_100000011 Ga0068852_10000001159 409
92 3300006038 Ga0075365_10000083 Ga0075365_1000008320 409
93 3300006178 Ga0075367_10012398 Ga0075367_100123984 409
94 3300006186 Ga0075369_10003846 Ga0075369_100038464 409
95 3300006844 Ga0075428_100000608 Ga0075428_10000060811 409
96 3300009093 Ga0105240_10000030 Ga0105240_1000003047 409
97 3300009093 Ga0105240_10000554 Ga0105240_1000055423 409
98 3300009174 Ga0105241_10035700 Ga0105241_100357003 409
99 3300009545 Ga0105237_10000001 Ga0105237_10000001331 409
100 3300010375 Ga0105239_10001282 Ga0105239_1000128220 409
101 3300011119 Ga0105246_10000260 Ga0105246_100002606 409
102 3300011119 Ga0105246_10002745 Ga0105246_100027452 409
103 3300011119 Ga0105246_10002918 Ga0105246_100029182 409
104 3300013100 Ga0157373_10006247 Ga0157373_1000624711 409
105 3300013100 Ga0157373_10010923 Ga0157373_100109237 409
106 3300013100 Ga0157373_10013605 Ga0157373_100136052 409
107 3300013102 Ga0157371_10001505 Ga0157371_1000150523 409
108 3300013104 Ga0157370_10000866 Ga0157370_1000086622 409
109 3300013104 Ga0157370_10001133 Ga0157370_100011339 409
110 3300013104 Ga0157370_10001378 Ga0157370_100013785 409
111 3300013105 Ga0157369_10000003 Ga0157369_10000003316 409
112 3300013105 Ga0157369_10000026 Ga0157369_1000002680 409
113 3300013105 Ga0157369_10000055 Ga0157369_1000005594 409
114 3300013105 Ga0157369_10000634 Ga0157369_1000063420 409
115 3300013105 Ga0157369_10005355 Ga0157369_1000535516 409
116 3300013105 Ga0157369_10015155 Ga0157369_100151558 409
117 3300013105 Ga0157369_10334525 Ga0157369_103345252 409
118 3300013296 Ga0157374_10007123 Ga0157374_100071235 409
119 3300013307 Ga0157372_10000007 Ga0157372_10000007330 409
120 3300013307 Ga0157372_10000106 Ga0157372_1000010632 409
121 3300013307 Ga0157372_10212276 Ga0157372_102122762 409
122 3300014745 Ga0157377_10000500 Ga0157377_1000050017 409
123 3300014969 Ga0157376_10000085 Ga0157376_1000008567 409
124 3300014969 Ga0157376_10046120 Ga0157376_100461202 409
125 3300025904 Ga0207647_10001626 Ga0207647_1000162616 409
126 3300025909 Ga0207705_10000010 Ga0207705_10000010493 409
127 3300025913 Ga0207695_10000009 Ga0207695_10000009333 409
128 3300025913 Ga0207695_10001111 Ga0207695_1000111143 409
129 3300025914 Ga0207671_10000003 Ga0207671_10000003333 409
130 3300025919 Ga0207657_10000251 Ga0207657_1000025124 409
131 3300025919 Ga0207657_10000959 Ga0207657_100009593 409
132 3300025920 Ga0207649_10015580 Ga0207649_100155803 409
133 3300025932 Ga0207690_10019032 Ga0207690_100190324 409
134 3300025933 Ga0207706_10000004 Ga0207706_1000000441 409
135 3300025944 Ga0207661_10088177 Ga0207661_100881772 409
136 3300025945 Ga0207679_10000126 Ga0207679_1000012673 409
137 3300025949 Ga0207667_10000027 Ga0207667_10000027187 409
138 3300025949 Ga0207667_10162586 Ga0207667_101625862 409
139 3300026078 Ga0207702_10000051 Ga0207702_1000005164 409
140 3300026078 Ga0207702_10000431 Ga0207702_1000043120 409
141 3300026116 Ga0207674_10000032 Ga0207674_1000003262 409
142 3300026142 Ga0207698_10000024 Ga0207698_10000024112 409
143 3300026142 Ga0207698_10056982 Ga0207698_100569823 409
144 3300030742 Ga0316183_1034383 Ga0316183_10343832 409
145 3300030745 Ga0316182_1069309 Ga0316182_10693092 409
146 3300031730 Ga0307516_10025636 Ga0307516_100256364 409
147 3300037418 Ga0395900_0000001 Ga0395900_0000001_411297_412526 409
148 3300037466 Ga0395898_0000002 Ga0395898_0000002_693480_694709 409
149 3300038443 Ga0395901_0000006 Ga0395901_0000006_339156_340385 409
150 3300041405 Ga0439438_015014 Ga0439438_015014_1008_2240 409
151 3300041410 Ga0439461_0000245 Ga0439461_0000245_2478_3707 409
152 3300042004 Ga0439445_0001423 Ga0439445_0001423_2447_3679 409
153 3300042006 Ga0439432_018819 Ga0439432_018819_711_1943 409
154 3300042145 Ga0450906_002216 Ga0450906_002216_1340_2572 409
155 3300042156 Ga0439446_0000003 Ga0439446_0000003_132376_133605 409
156 3300042156 Ga0439446_0002433 Ga0439446_0002433_2530_3762 409
157 3300042435 Ga0439434_0002311 Ga0439434_0002311_3991_5223 409
158 3300042439 Ga0439464_0000005 Ga0439464_0000005_5857_7086 409
159 3300046460 Ga0495638_0000061 Ga0495638_0000061_67826_69058 409
160 3300046542 Ga0495597_0018370 Ga0495597_0018370_693_1925 409
161 3300046810 Ga0495660_0000005 Ga0495660_0000005_327164_328396 409
162 3300050492 nmdc:mga0yw44_14_c1 nmdc:mga0yw44_14_c1_67056_68285 409
163 3300050496 nmdc:mga07m45_1009_c1 nmdc:mga07m45_1009_c1_3343_4572 409
164 3300053087 Ga0500643_001774 Ga0500643_001774_749_1981 409
165 3300053090 Ga0500646_0000005 Ga0500646_0000005_61266_62498 409
166 3300053092 Ga0500583_0001922 Ga0500583_0001922_2489_3721 409
167 3300053093 Ga0500651_0000025 Ga0500651_0000025_36146_37378 409
168 3300053096 Ga0500641_0000001 Ga0500641_0000001_999606_1000838 409
169 3300053103 Ga0500555_000009 Ga0500555_000009_59483_60712 409
170 3300053109 Ga0500569_000001 Ga0500569_000001_67827_69059 409
171 3300053118 Ga0500594_0000011 Ga0500594_0000011_50032_51264 409
172 3300053131 Ga0500652_000001 Ga0500652_000001_481025_482254 409
173 3300053146 Ga0500588_0000027 Ga0500588_0000027_5735_6967 409
174 3300053153 Ga0500616_0005186 Ga0500616_0005186_5211_6440 409
175 3300053724 Ga0500570_001064 Ga0500570_001064_9643_10875 409

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00482

T2SSF

Type II secretion system (T2SS), protein F

70

193

0.99

PF00482

T2SSF

Type II secretion system (T2SS), protein F

288

410

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
2whn-assembly2.cif.gz_B n-terminal domain from the pilc type iv pilus biogenesis protein 0.9801 63 160
3c1q-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.9683 62 168
2vma-assembly1.cif.gz_A the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.9682 62 173
5nbg-assembly1.cif.gz_B structure of the cytoplasmic domain i of outf in the d. dadantii type ii secretion system 0.9682 63 168
2vmb-assembly2.cif.gz_B the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae 0.9656 63 170
ID Description Score Start End Superfamily
2whnB00 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.9801 63 160 1.20.81.30
af_P41441_261_365_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.9447 273 371 1.20.81.30
3c1qB00 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.939 63 170 1.20.81.30
af_P36646_1_51_3.10.20.10 Alpha Beta;Roll;Ubiquitin-like (UB roll); 0.9336 2 48 3.10.20.10
af_P36646_249_359_1.20.81.30 Mainly Alpha;Up-down Bundle;Receptor-associated Protein;Type II secretion system (T2SS), domain F 0.9306 260 369 1.20.81.30
ID Description Score Start End GO Terms
AF-A0A7Z9PV31-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.9715 62 162 GO:0005886
AF-A0A2H0FJC4-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.9416 234 352 GO:0005886
AF-A0A1V4W6E6-F1-model_v4 Putative type II secretion system protein F 0.917 150 408 GO:0005886
GO:0015628
AF-A0A0S7WN77-F1-model_v4 Type II secretion system protein GspF domain-containing protein 0.9104 236 409 GO:0005886
GO:0015628
AF-A0A7C4Z1F4-F1-model_v4 Type II secretion system F family protein 0.9089 191 409 GO:0005886
GO:0015628

Feature Viewer

pLDDT pTM Quality
78.57 0.59 Medium
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Predicted Structure (AlphaFold2)

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