F262625

General Info

Members Datasets Scaffolds Average Seq Length
173 117 151 373

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10003260|Ga0157370_1000326012
Length 411
Sequence MGREPVKILFMFSTIFQQHDWTAVRKSIYDKTPADVERALARSHRDLEDFKALISPAAAPYLETMAQISHQLTLKRFGKVIQMYIPLYLSNECQNICTYCGFSYDNKIRRKTLNAGELLREVAAIGEMGYEHVLLVSGEANQTVGVDYFIKALQVVRPHFANISMEVQPLEQEDYERLIQEGLYSVLVYQETYHREDYKLHHPKGKKSNFGYRLDTPDRLGRAGIHKMGLGVLIGLEDWRTDSFFTALHLQYLERTYWKTKYSISFPRLRPHAGEGGDPKLGSRTSQENPASASGEDEWTGLNPKVTMTDRELIQLICAYRLLDEEVELSLSTRESPVFRDHAIKLGITSISAGSRTNPGGYVVDQESLEQFEIHDDRSPGVIAEMIRRQGYDPVWKDWDLALQHRPVDLK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2738541283 Pedobacter sp. OK701 Isolate Unclassified
4 2738541302 Pedobacter sp. CF074 Isolate Unclassified
5 2738543023 Pedobacter sp. OK628 Isolate Unclassified
6 2739367651 Pedobacter sp. OK291 Isolate Unclassified
7 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
8 2818991437 Pedobacter terrae 518 Isolate Unclassified
9 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
10 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
11 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
12 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
13 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
14 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
15 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
16 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
17 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
18 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
19 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
20 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
21 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
22 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
23 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
24 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
28 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
29 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
30 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
31 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
32 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
33 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
53 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
54 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
55 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
56 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
57 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
70 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
71 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
72 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
73 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
76 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
77 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
80 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
81 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
85 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
86 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
87 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
88 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
91 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
94 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
95 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
96 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
97 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
98 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
99 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
100 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
101 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
102 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
103 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
104 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
105 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
106 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
107 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
108 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
111 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
112 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
113 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
114 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
115 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
116 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
117 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.28
Metatranscriptomes 0
Isolates 12.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.67
Nodule 0
Rhizoplane 0.58
Rhizosphere 69.94
Stem 0
Stem Tuber 0
Unclassified 20.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_315050 2162886007 Bacteria 2974
2 rootH2_10001369 3300003320 Bacteria 69395
3 rootH2_10012490 3300003320 Bacteria 41263
4 rootH2_10031684 3300003320 Bacteria 6175
5 rootH2_10253138 3300003320 Bacteria 1434
6 rootL2_10006694 3300003322 Bacteria 6759
7 rootL2_10026364 3300003322 Bacteria 12539
8 rootL2_10065368 3300003322 Bacteria 6276
9 rootL2_10070964 3300003322 Bacteria 6427
10 rootL2_10128141 3300003322 Bacteria 3001
11 rootL2_10235424 3300003322 Bacteria 2309
12 rootH1_10053181 3300003323 Bacteria 17561
13 rootH1_10257215 3300003323 Bacteria 1955
14 Ga0055536_1000002 3300003781 Bacteria 605605
15 Ga0055530_10001365 3300003791 Bacteria 18080
16 Ga0055531_10000040 3300003794 Bacteria 139402
17 Ga0065714_10064526 3300005288 Bacteria 41726
18 Ga0065704_10079010 3300005289 Bacteria 4281
19 Ga0065704_10085099 3300005289 Bacteria 3262
20 Ga0068853_100121177 3300005539 Bacteria 2333
21 Ga0070665_100000196 3300005548 Bacteria 106415
22 Ga0068855_100142457 3300005563 Bacteria 2731
23 Ga0068855_100181112 3300005563 Bacteria 2382
24 Ga0068856_100093186 3300005614 Bacteria 2998
25 Ga0068860_100000004 3300005843 Bacteria 506126
26 Ga0068860_100003752 3300005843 Bacteria 15627
27 Ga0105240_10000061 3300009093 Bacteria 218897
28 Ga0105240_10000087 3300009093 Bacteria 187637
29 Ga0105240_10001775 3300009093 Bacteria 36392
30 Ga0105240_10064227 3300009093 Bacteria 4562
31 Ga0114129_10016739 3300009147 Bacteria 10443
32 Ga0105241_10252387 3300009174 Unclassified 1496
33 Ga0105237_10000157 3300009545 Bacteria 96235
34 Ga0105237_10013351 3300009545 Bacteria 8616
35 Ga0105237_10017761 3300009545 Bacteria 7376
36 Ga0105237_10151838 3300009545 Bacteria 2313
37 Ga0105238_10102349 3300009551 Bacteria 2846
38 Ga0105238_10212018 3300009551 Bacteria 1913
39 Ga0105239_10000029 3300010375 Bacteria 234749
40 Ga0105239_10001020 3300010375 Bacteria 39125
41 Ga0105239_10001301 3300010375 Bacteria 33689
42 Ga0105239_10101106 3300010375 Bacteria 3189
43 Ga0157373_10002743 3300013100 Bacteria 13338
44 Ga0157373_10034661 3300013100 Bacteria 3626
45 Ga0157371_10000025 3300013102 Bacteria 279746
46 Ga0157371_10008094 3300013102 Bacteria 8405
47 Ga0157370_10003260 3300013104 Bacteria 19120
48 Ga0157370_10177901 3300013104 Bacteria 1977
49 Ga0157370_10281131 3300013104 Bacteria 1538
50 Ga0157369_10000038 3300013105 Bacteria 189078
51 Ga0157374_10000001 3300013296 Bacteria 1077351
52 Ga0163162_10000102 3300013306 Bacteria 76836
53 Ga0163162_10001391 3300013306 Bacteria 22512
54 Ga0157372_10400620 3300013307 Bacteria 1599
55 Ga0157372_10412939 3300013307 Unclassified 1573
56 Ga0182008_10000004 3300014497 Bacteria 436804
57 Ga0182008_10000117 3300014497 Bacteria 60070
58 Ga0182008_10004548 3300014497 Bacteria 8092
59 Ga0157376_10001093 3300014969 Bacteria 17775
60 Ga0182006_1000131 3300015261 Bacteria 80570
61 Ga0182007_10000059 3300015262 Bacteria 88462
62 Ga0182005_1000089 3300015265 Bacteria 68648
63 Ga0183373_1002 3300015682 Bacteria 990153
64 Ga0163161_10000203 3300017792 Bacteria 54429
65 Ga0163161_10000226 3300017792 Bacteria 51649
66 Ga0163161_10002380 3300017792 Bacteria 13475
67 Ga0209676_1000022 3300025292 Bacteria 605659
68 Ga0209050_1000020 3300025298 Bacteria 605671
69 Ga0209257_1000004 3300025304 Bacteria 1678347
70 Ga0207695_10000057 3300025913 Bacteria 376090
71 Ga0207695_10000068 3300025913 Bacteria 324859
72 Ga0207695_10000892 3300025913 Bacteria 54116
73 Ga0207695_10027780 3300025913 Bacteria 6294
74 Ga0207671_10000681 3300025914 Bacteria 44184
75 Ga0207671_10010186 3300025914 Bacteria 7783
76 Ga0207671_10010337 3300025914 Bacteria 7708
77 Ga0207671_10013277 3300025914 Bacteria 6568
78 Ga0207671_10023117 3300025914 Unclassified 4689
79 Ga0207694_10208638 3300025924 Bacteria 1591
80 Ga0207694_10243059 3300025924 Bacteria 1471
81 Ga0207667_10144290 3300025949 Bacteria 2451
82 Ga0207667_10191055 3300025949 Bacteria 2101
83 Ga0207639_10074071 3300026041 Bacteria 2672
84 Ga0207702_10047382 3300026078 Bacteria 3622
85 Ga0207702_10083587 3300026078 Bacteria 2778
86 Ga0207702_10218730 3300026078 Bacteria 1774
87 Ga0207674_10012110 3300026116 Bacteria 9657
88 Ga0268266_10000327 3300028379 Bacteria 74821
89 Ga0268264_10000011 3300028381 Bacteria 580884
90 Ga0268264_10006719 3300028381 Bacteria 9669
91 Ga0307517_10004159 3300028786 Bacteria 22319
92 Ga0307511_10000208 3300030521 Bacteria 59396
93 Ga0307509_10155255 3300031507 Bacteria 2196
94 Ga0307508_10000763 3300031616 Bacteria 38032
95 Ga0307516_10039233 3300031730 Bacteria 4722
96 Ga0307405_10000066 3300031731 Bacteria 48667
97 Ga0307407_10000011 3300031903 Bacteria 174454
98 Ga0307409_100009003 3300031995 Bacteria 6105
99 Ga0307416_100000005 3300032002 Bacteria 477728
100 Ga0307414_10088691 3300032004 Bacteria 2290
101 Ga0307414_10115485 3300032004 Bacteria 2053
102 Ga0307507_10000345 3300033179 Bacteria 94462
103 Ga0307507_10001092 3300033179 Bacteria 60190
104 Ga0373927_0124877 3300035695 Bacteria 1680
105 Ga0395899_0000006 3300037312 Bacteria 666341
106 Ga0395900_0048677 3300037418 Bacteria 4367
107 Ga0395901_0038566 3300038443 Bacteria 4943
108 Ga0400490_38286 3300038726 Bacteria 3553
109 Ga0400483_274189 3300039062 Bacteria 1278
110 Ga0439445_0004217 3300042004 Bacteria 3252
111 Ga0466970_0002523 3300044765 Bacteria 8831
112 Ga0466957_0003818 3300044842 Bacteria 8329
113 Ga0466959_0036713 3300045049 Bacteria 3620
114 Ga0495627_013890 3300046453 Bacteria 2825
115 Ga0495650_0000025 3300046471 Bacteria 486001
116 Ga0495606_0006228 3300046507 Bacteria 11082
117 Ga0495606_0024830 3300046507 Bacteria 4308
118 Ga0495610_0000049 3300046512 Bacteria 149009
119 Ga0495610_0001274 3300046512 Bacteria 22574
120 Ga0495610_0007958 3300046512 Bacteria 6955
121 Ga0495610_0054072 3300046512 Bacteria 1941
122 Ga0495616_0001397 3300046513 Bacteria 16818
123 Ga0495648_0002147 3300046524 Bacteria 18589
124 Ga0495633_0000144 3300046558 Bacteria 94711
125 Ga0495633_0006179 3300046558 Bacteria 7157
126 Ga0495611_0000172 3300046648 Bacteria 46918
127 Ga0495625_0000063 3300046660 Bacteria 176435
128 Ga0495661_0006876 3300046665 Bacteria 7956
129 Ga0495649_0000006 3300046694 Bacteria 542188
130 Ga0495687_000006 3300047443 Bacteria 571936
131 Ga0495687_005536 3300047443 Bacteria 8013
132 Ga0495673_0008394 3300047469 Bacteria 5822
133 Ga0495686_0000078 3300047472 Bacteria 203927
134 Ga0495686_0000718 3300047472 Bacteria 44415
135 Ga0496115_0106124 3300048918 Bacteria 2306
136 Ga0496121_0000081 3300048924 Bacteria 229506
137 Ga0496122_0001404 3300048925 Bacteria 39047
138 Ga0496123_0005381 3300048926 Bacteria 12907
139 Ga0496126_0031150 3300048929 Bacteria 5044
140 Ga0501034_0343680 3300049571 Bacteria 1422
141 Ga0501241_000268 3300049758 Bacteria 11629
142 Ga0501241_002536 3300049758 Bacteria 3522
143 Ga0500562_000013 3300053108 Bacteria 150003
144 Ga0500655_019685 3300053133 Bacteria 1258
145 Ga0500568_0025412 3300053139 Bacteria 2499
146 Ga0500603_008721 3300053150 Bacteria 2257
147 Ga0500604_0000310 3300053151 Bacteria 13564
148 Ga0500616_0033468 3300053153 Bacteria 2805
149 Ga0500622_0000113 3300053156 Bacteria 83196
150 Ga0500622_0000212 3300053156 Bacteria 61612
151 Ga0500622_0002737 3300053156 Bacteria 12445

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053150 Ga0500603_008721 Ga0500603_008721_487_1605 322
2 3300044842 Ga0466957_0003818 Ga0466957_0003818_7106_8236 326
3 3300035695 Ga0373927_0124877 Ga0373927_0124877_410_1528 334
4 3300049571 Ga0501034_0343680 Ga0501034_0343680_246_1298 337
5 3300026116 Ga0207674_10012110 Ga0207674_100121108 349
6 3300009545 Ga0105237_10017761 Ga0105237_100177613 352
7 3300025914 Ga0207671_10023117 Ga0207671_100231172 352
8 3300013296 Ga0157374_10000001 Ga0157374_10000001718 354
9 3300014969 Ga0157376_10001093 Ga0157376_1000109312 354
10 iso_pu_bacteria 2738541283 2738756215 357
11 iso_pu_bacteria 2818991442 2819575063 357
12 iso_pu_bacteria 2840677318 2840678763 357
13 iso_pu_bacteria 2896085136 2896086581 357
14 iso_pu_bacteria 2919186247 2919186584 357
15 iso_pu_bacteria 2939664404 2939666146 357
16 3300003320 rootH2_10012490 rootH2_1001249024 358
17 iso_pu_bacteria 2738543023 2739303342 358
18 iso_pu_bacteria 2852627209 2852628357 358
19 iso_pu_bacteria 2896109856 2896113120 358
20 3300045049 Ga0466959_0036713 Ga0466959_0036713_1117_2220 359
21 iso_pu_bacteria 2833640130 2833641693 359
22 3300003320 rootH2_10001369 rootH2_1000136942 360
23 3300005843 Ga0068860_100003752 Ga0068860_1000037524 360
24 3300009093 Ga0105240_10000061 Ga0105240_1000006175 360
25 3300009093 Ga0105240_10000087 Ga0105240_1000008771 360
26 3300009093 Ga0105240_10001775 Ga0105240_1000177513 360
27 3300009174 Ga0105241_10252387 Ga0105241_102523872 360
28 3300009545 Ga0105237_10151838 Ga0105237_101518382 360
29 3300009551 Ga0105238_10102349 Ga0105238_101023492 360
30 3300009551 Ga0105238_10212018 Ga0105238_102120182 360
31 3300010375 Ga0105239_10001020 Ga0105239_1000102013 360
32 3300010375 Ga0105239_10001301 Ga0105239_100013017 360
33 3300010375 Ga0105239_10101106 Ga0105239_101011061 360
34 3300025913 Ga0207695_10000057 Ga0207695_10000057179 360
35 3300025913 Ga0207695_10000068 Ga0207695_10000068226 360
36 3300025913 Ga0207695_10000892 Ga0207695_1000089233 360
37 3300025914 Ga0207671_10010186 Ga0207671_100101869 360
38 3300025914 Ga0207671_10010337 Ga0207671_100103371 360
39 3300025924 Ga0207694_10208638 Ga0207694_102086382 360
40 3300025924 Ga0207694_10243059 Ga0207694_102430592 360
41 3300026078 Ga0207702_10218730 Ga0207702_102187301 360
42 3300028381 Ga0268264_10006719 Ga0268264_100067194 360
43 3300037312 Ga0395899_0000006 Ga0395899_0000006_605582_606709 360
44 3300037418 Ga0395900_0048677 Ga0395900_0048677_228_1355 360
45 3300038443 Ga0395901_0038566 Ga0395901_0038566_3188_4294 360
46 3300042004 Ga0439445_0004217 Ga0439445_0004217_261_1367 360
47 3300046648 Ga0495611_0000172 Ga0495611_0000172_484_1590 360
48 3300048918 Ga0496115_0106124 Ga0496115_0106124_800_1906 360
49 3300053108 Ga0500562_000013 Ga0500562_000013_136868_137995 360
50 3300053153 Ga0500616_0033468 Ga0500616_0033468_1545_2672 360
51 iso_pu_bacteria 2585427687 2586209538 360
52 iso_pu_bacteria 2738541302 2738852600 360
53 iso_pu_bacteria 2739367651 2739591280 360
54 iso_pu_bacteria 2775506987 2776613848 360
55 iso_pu_bacteria 2818991437 2819549718 360
56 iso_pu_bacteria 2842722452 2842727497 360
57 iso_pu_bacteria 2842909656 2842913895 360
58 iso_pu_bacteria 2849281842 2849283415 360
59 iso_pu_bacteria 2883068021 2883069569 360
60 iso_pu_bacteria 2904445276 2904447151 360
61 iso_pu_bacteria 2945997725 2945998192 360
62 iso_pu_bacteria 2954016120 2954020640 360
63 3300003320 rootH2_10031684 rootH2_100316843 361
64 3300003320 rootH2_10253138 rootH2_102531381 361
65 3300003322 rootL2_10006694 rootL2_100066946 361
66 3300003322 rootL2_10070964 rootL2_100709645 361
67 3300003322 rootL2_10128141 rootL2_101281413 361
68 3300003322 rootL2_10235424 rootL2_102354242 361
69 3300003323 rootH1_10053181 rootH1_100531816 361
70 3300003794 Ga0055531_10000040 Ga0055531_1000004032 361
71 3300005539 Ga0068853_100121177 Ga0068853_1001211772 361
72 3300005843 Ga0068860_100000004 Ga0068860_100000004238 361
73 3300009147 Ga0114129_10016739 Ga0114129_100167391 361
74 3300009545 Ga0105237_10000157 Ga0105237_1000015756 361
75 3300013100 Ga0157373_10002743 Ga0157373_100027432 361
76 3300013306 Ga0163162_10001391 Ga0163162_100013913 361
77 3300013307 Ga0157372_10412939 Ga0157372_104129392 361
78 3300014497 Ga0182008_10004548 Ga0182008_100045486 361
79 3300015265 Ga0182005_1000089 Ga0182005_100008927 361
80 3300017792 Ga0163161_10002380 Ga0163161_100023804 361
81 3300025304 Ga0209257_1000004 Ga0209257_1000004123 361
82 3300025914 Ga0207671_10000681 Ga0207671_1000068115 361
83 3300025914 Ga0207671_10013277 Ga0207671_100132773 361
84 3300026041 Ga0207639_10074071 Ga0207639_100740712 361
85 3300028381 Ga0268264_10000011 Ga0268264_10000011128 361
86 3300028786 Ga0307517_10004159 Ga0307517_100041598 361
87 3300031507 Ga0307509_10155255 Ga0307509_101552551 361
88 3300031616 Ga0307508_10000763 Ga0307508_1000076319 361
89 3300032004 Ga0307414_10115485 Ga0307414_101154852 361
90 3300046524 Ga0495648_0002147 Ga0495648_0002147_12718_13863 361
91 3300047472 Ga0495686_0000078 Ga0495686_0000078_197940_199082 361
92 3300048924 Ga0496121_0000081 Ga0496121_0000081_219491_220600 361
93 3300048925 Ga0496122_0001404 Ga0496122_0001404_34275_35405 361
94 3300048926 Ga0496123_0005381 Ga0496123_0005381_5288_6418 361
95 3300048929 Ga0496126_0031150 Ga0496126_0031150_335_1444 361
96 3300049758 Ga0501241_000268 Ga0501241_000268_3485_4594 361
97 3300053139 Ga0500568_0025412 Ga0500568_0025412_759_1904 361
98 3300053151 Ga0500604_0000310 Ga0500604_0000310_858_1988 361
99 3300053156 Ga0500622_0000113 Ga0500622_0000113_45126_46256 361
100 3300053156 Ga0500622_0002737 Ga0500622_0002737_7280_8425 361
101 3300003323 rootH1_10257215 rootH1_102572152 362
102 3300005548 Ga0070665_100000196 Ga0070665_10000019631 362
103 3300005563 Ga0068855_100142457 Ga0068855_1001424572 362
104 3300005563 Ga0068855_100181112 Ga0068855_1001811122 362
105 3300005614 Ga0068856_100093186 Ga0068856_1000931863 362
106 3300009093 Ga0105240_10064227 Ga0105240_100642273 362
107 3300009545 Ga0105237_10013351 Ga0105237_100133512 362
108 3300010375 Ga0105239_10000029 Ga0105239_10000029110 362
109 3300025949 Ga0207667_10144290 Ga0207667_101442902 362
110 3300025949 Ga0207667_10191055 Ga0207667_101910552 362
111 3300026078 Ga0207702_10083587 Ga0207702_100835872 362
112 3300028379 Ga0268266_10000327 Ga0268266_1000032741 362
113 3300030521 Ga0307511_10000208 Ga0307511_1000020827 362
114 3300031730 Ga0307516_10039233 Ga0307516_100392333 362
115 3300038726 Ga0400490_38286 Ga0400490_38286_1563_2675 362
116 3300039062 Ga0400483_274189 Ga0400483_274189_57_1169 362
117 3300046453 Ga0495627_013890 Ga0495627_013890_453_1565 362
118 3300046507 Ga0495606_0006228 Ga0495606_0006228_3527_4642 362
119 3300046558 Ga0495633_0000144 Ga0495633_0000144_92810_93925 362
120 3300047443 Ga0495687_000006 Ga0495687_000006_82081_83235 362
121 3300053133 Ga0500655_019685 Ga0500655_019685_10_1143 362
122 3300053156 Ga0500622_0000212 Ga0500622_0000212_54208_55320 362
123 3300003781 Ga0055536_1000002 Ga0055536_1000002332 363
124 3300003791 Ga0055530_10001365 Ga0055530_1000136512 363
125 3300005289 Ga0065704_10085099 Ga0065704_100850992 363
126 3300025292 Ga0209676_1000022 Ga0209676_1000022205 363
127 3300025298 Ga0209050_1000020 Ga0209050_1000020334 363
128 3300032004 Ga0307414_10088691 Ga0307414_100886911 363
129 3300033179 Ga0307507_10000345 Ga0307507_1000034566 363
130 3300033179 Ga0307507_10001092 Ga0307507_1000109214 363
131 3300046471 Ga0495650_0000025 Ga0495650_0000025_456990_458105 363
132 3300046512 Ga0495610_0007958 Ga0495610_0007958_3440_4555 363
133 3300046512 Ga0495610_0054072 Ga0495610_0054072_471_1586 363
134 3300046513 Ga0495616_0001397 Ga0495616_0001397_10863_11978 363
135 3300046558 Ga0495633_0006179 Ga0495633_0006179_3201_4316 363
136 3300046660 Ga0495625_0000063 Ga0495625_0000063_111365_112480 363
137 3300046665 Ga0495661_0006876 Ga0495661_0006876_4289_5404 363
138 3300046694 Ga0495649_0000006 Ga0495649_0000006_84963_86078 363
139 3300047443 Ga0495687_005536 Ga0495687_005536_2834_3949 363
140 3300047469 Ga0495673_0008394 Ga0495673_0008394_3824_4939 363
141 3300047472 Ga0495686_0000718 Ga0495686_0000718_4500_5615 363
142 2162886007 SwRhRL2b_contig_315050 SwRhRL2b_0744.00002880 364
143 3300003322 rootL2_10026364 rootL2_100263646 364
144 3300003322 rootL2_10065368 rootL2_100653682 364
145 3300005288 Ga0065714_10064526 Ga0065714_100645268 364
146 3300005289 Ga0065704_10079010 Ga0065704_100790103 364
147 3300013100 Ga0157373_10034661 Ga0157373_100346613 364
148 3300013102 Ga0157371_10000025 Ga0157371_10000025102 364
149 3300013102 Ga0157371_10008094 Ga0157371_100080944 364
150 3300013104 Ga0157370_10003260 Ga0157370_1000326012 364
151 3300013104 Ga0157370_10177901 Ga0157370_101779012 364
152 3300013104 Ga0157370_10281131 Ga0157370_102811312 364
153 3300013105 Ga0157369_10000038 Ga0157369_10000038168 364
154 3300013306 Ga0163162_10000102 Ga0163162_1000010227 364
155 3300013307 Ga0157372_10400620 Ga0157372_104006202 364
156 3300014497 Ga0182008_10000004 Ga0182008_10000004341 364
157 3300014497 Ga0182008_10000117 Ga0182008_1000011741 364
158 3300015261 Ga0182006_1000131 Ga0182006_100013145 364
159 3300015262 Ga0182007_10000059 Ga0182007_1000005950 364
160 3300015682 Ga0183373_1002 Ga0183373_1002198 364
161 3300017792 Ga0163161_10000203 Ga0163161_1000020328 364
162 3300017792 Ga0163161_10000226 Ga0163161_1000022630 364
163 3300025913 Ga0207695_10027780 Ga0207695_100277805 364
164 3300026078 Ga0207702_10047382 Ga0207702_100473822 364
165 3300031731 Ga0307405_10000066 Ga0307405_100000666 364
166 3300031903 Ga0307407_10000011 Ga0307407_1000001152 364
167 3300031995 Ga0307409_100009003 Ga0307409_1000090034 364
168 3300032002 Ga0307416_100000005 Ga0307416_100000005361 364
169 3300044765 Ga0466970_0002523 Ga0466970_0002523_5055_6200 364
170 3300046507 Ga0495606_0024830 Ga0495606_0024830_875_1999 364
171 3300046512 Ga0495610_0000049 Ga0495610_0000049_35011_36135 364
172 3300046512 Ga0495610_0001274 Ga0495610_0001274_15816_16940 364
173 3300049758 Ga0501241_002536 Ga0501241_002536_1688_2815 364

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06968

BATS

Biotin and Thiamin Synthesis associated domain

265

393

0.91

PF04055

Radical_SAM

Radical SAM superfamily

87

246

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7pd2-assembly2.cif.gz_B crystal structure of the substrate-free radical sam tyrosine lyase thih (2-iminoacetate synthase) from thermosinus carboxydivorans 0.9573 2 357
7pd2-assembly2.cif.gz_B crystal structure of the substrate-free radical sam tyrosine lyase thih (2-iminoacetate synthase) from thermosinus carboxydivorans 0.9343 2 357
4wcx-assembly1.cif.gz_A crystal structure of hydg: a maturase of the [fefe]-hydrogenase 0.9138 13 363
4wcx-assembly1.cif.gz_A crystal structure of hydg: a maturase of the [fefe]-hydrogenase 0.8802 13 363
4rtb-assembly1.cif.gz_A x-ray structure of the fefe-hydrogenase maturase hydg from carboxydothermus hydrogenoformans 0.864 14 357
ID Description Score Start End Superfamily
af_P30140_10_369_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9649 11 358 3.20.20.70
af_P30140_10_369_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9307 11 358 3.20.20.70
6htoB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8536 11 356 3.20.20.70
af_Q2FVJ7_11_319_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8269 36 352 3.20.20.70
af_Q2FVJ7_11_319_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8171 36 352 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A7X8HSR8-F1-model_v4 2-iminoacetate synthase ThiH 0.9746 4 276 GO:0003824
GO:0005506
GO:0009228
GO:0051539
AF-A0A6G1V477-F1-model_v4 deleted 0.9732 4 341
AF-A0A519NU92-F1-model_v4 deleted 0.9729 33 358
AF-A0A357QHT1-F1-model_v4 2-iminoacetate synthase ThiH 0.9727 4 358 GO:0003824
GO:0005506
GO:0009228
GO:0051539
AF-R5YD36-F1-model_v4 deleted 0.9721 2 358

Feature Viewer

pLDDT pTM Quality
87.45 0.89 High
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Predicted Structure (AlphaFold2)

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