F262236

General Info

Members Datasets Scaffolds Average Seq Length
173 128 346 292

Family's Representative Sequence

Representative Sequence 3300005530|Ga0070679_100256239|Ga0070679_1002562391
Length 300
Sequence MADRDSPNRSPGRILRDTWAGGPVALPGVFSPLVAKLAERIGFRAVYLSGGALSAGNGVPDIGLLTLTEFVQHAQLTAQATTLPLISDADTGFGEALNVERTVRLFEQAGVAGIHLEDQQMPKRCGHLSGKSLVEPEAMAAKIRAAIAARRNPDFVIIARTDARGVNGFEDAVRRAKLYLDAGADAIFPEALETADEFARFAKEVPTTLLANMTEFGKSPNLDVATLGAMGYRLVLFPLTAFRVAMKAAEETLADLFRTGHQKATIPKMLTRAELYDLLGYTGYEQRDRAYFGSAGERPA

Samples

Sample ID Description Type Environment
1 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
33 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
74 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
79 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
80 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
81 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
82 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
83 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
84 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
85 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
86 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
89 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
90 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
93 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
94 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
95 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
96 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
97 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
98 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
99 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
100 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
101 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
102 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
103 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
104 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
105 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
106 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
107 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
108 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
109 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
110 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
111 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
112 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
116 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
117 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
118 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
119 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
120 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
121 2582580736 Prauserella sp. Am3 Isolate Unclassified
122 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
123 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
124 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
125 2837183177 Egibacter rhizosphaerae EGI 80759 Isolate Unclassified
126 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
127 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
128 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.49
Metatranscriptomes 2.89
Isolates 4.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.58
Nodule 0
Rhizoplane 5.2
Rhizosphere 89.02
Stem 0
Stem Tuber 0
Unclassified 0.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070679_100256239 3300005530 Bacteria 1705
2 Ga0065712_10092843 3300005290 Bacteria 2316
3 Ga0070658_10000787 3300005327 Bacteria 27200
4 Ga0070658_10109462 3300005327 Bacteria 2287
5 Ga0070683_100245533 3300005329 Bacteria 1703
6 Ga0070680_100000852 3300005336 Bacteria 21628
7 Ga0070680_100249572 3300005336 Unclassified 1500
8 Ga0070680_100267984 3300005336 Bacteria 1446
9 Ga0070682_100036662 3300005337 Bacteria 2998
10 Ga0070682_100183718 3300005337 Bacteria 1463
11 Ga0070660_100251162 3300005339 Bacteria 1442
12 Ga0070692_10013812 3300005345 Bacteria 3775
13 Ga0070668_100151448 3300005347 Bacteria 1876
14 Ga0070669_100312077 3300005353 Bacteria 1268
15 Ga0070671_100001440 3300005355 Bacteria 17785
16 Ga0070659_100269123 3300005366 Bacteria 1415
17 Ga0070709_10399365 3300005434 Bacteria 1026
18 Ga0070663_100064106 3300005455 Bacteria 2655
19 Ga0070662_100221218 3300005457 Bacteria 1511
20 Ga0070681_10006808 3300005458 Bacteria 11125
21 Ga0070707_100188787 3300005468 Bacteria 2009
22 Ga0070679_100000559 3300005530 Bacteria 31597
23 Ga0070679_100280754 3300005530 Bacteria 1618
24 Ga0070684_100043005 3300005535 Bacteria 3901
25 Ga0068853_100634907 3300005539 Bacteria 1016
26 Ga0070693_100127652 3300005547 Bacteria 1585
27 Ga0070665_100000628 3300005548 Bacteria 48120
28 Ga0070665_100005519 3300005548 Bacteria 13013
29 Ga0070665_100045410 3300005548 Bacteria 4412
30 Ga0068857_100189975 3300005577 Bacteria 1870
31 Ga0068854_100022707 3300005578 Bacteria 4280
32 Ga0068852_100076955 3300005616 Bacteria 2947
33 Ga0068859_100546959 3300005617 Bacteria 1252
34 Ga0068864_100224254 3300005618 Bacteria 1735
35 Ga0068870_10115548 3300005840 Bacteria 1538
36 Ga0068863_100161221 3300005841 Bacteria 2149
37 Ga0068860_100001210 3300005843 Bacteria 28178
38 Ga0068860_100400179 3300005843 Bacteria 1358
39 Ga0068862_100018822 3300005844 Bacteria 5754
40 Ga0081455_10000667 3300005937 Bacteria 44477
41 Ga0070717_10330725 3300006028 Bacteria 1359
42 Ga0075432_10049757 3300006058 Bacteria 1477
43 Ga0075428_100001256 3300006844 Bacteria 27079
44 Ga0075428_100181457 3300006844 Bacteria 2278
45 Ga0097620_100546929 3300006931 Bacteria 1252
46 Ga0111539_10261660 3300009094 Bacteria 2014
47 Ga0111539_10314954 3300009094 Bacteria 1821
48 Ga0105245_10078742 3300009098 Bacteria 3008
49 Ga0105243_10113707 3300009148 Bacteria 2270
50 Ga0105243_10369854 3300009148 Bacteria 1322
51 Ga0105238_10491212 3300009551 Bacteria 1228
52 Ga0105238_10622866 3300009551 Bacteria 1088
53 Ga0105238_10711395 3300009551 Bacteria 1017
54 Ga0157369_10504539 3300013105 Bacteria 1252
55 Ga0157372_10164293 3300013307 Bacteria 2567
56 Ga0157372_10815499 3300013307 Bacteria 1084
57 Ga0157379_10087188 3300014968 Bacteria 2799
58 Ga0157376_10571222 3300014969 Bacteria 1122
59 Ga0206356_11378107 3300020070 Bacteria 3699
60 Ga0206354_10306721 3300020081 Bacteria 5138
61 Ga0206354_10806692 3300020081 Bacteria 5081
62 Ga0206353_11044095 3300020082 Bacteria 25879
63 Ga0206353_11299278 3300020082 Bacteria 8666
64 Ga0207699_10329083 3300025906 Bacteria 1074
65 Ga0207705_10000524 3300025909 Bacteria 32614
66 Ga0207705_10048813 3300025909 Bacteria 3046
67 Ga0207684_10025193 3300025910 Bacteria 5070
68 Ga0207707_10000327 3300025912 Bacteria 50101
69 Ga0207707_10029574 3300025912 Bacteria 4791
70 Ga0207660_10000114 3300025917 Bacteria 46511
71 Ga0207662_10058674 3300025918 Bacteria 2304
72 Ga0207657_10026069 3300025919 Bacteria 5379
73 Ga0207657_10250488 3300025919 Bacteria 1412
74 Ga0207652_10000237 3300025921 Bacteria 57585
75 Ga0207652_10057892 3300025921 Bacteria 3338
76 Ga0207646_10060329 3300025922 Bacteria 3387
77 Ga0207659_10305833 3300025926 Bacteria 1307
78 Ga0207664_10204083 3300025929 Bacteria 1708
79 Ga0207644_10022844 3300025931 Bacteria 4276
80 Ga0207644_10300415 3300025931 Bacteria 1294
81 Ga0207690_10042208 3300025932 Bacteria 2994
82 Ga0207706_10033414 3300025933 Bacteria 4579
83 Ga0207669_10109934 3300025937 Bacteria 1845
84 Ga0207665_10182035 3300025939 Bacteria 1522
85 Ga0207691_10075861 3300025940 Bacteria 3030
86 Ga0207689_10027266 3300025942 Bacteria 4783
87 Ga0207667_10236689 3300025949 Bacteria 1869
88 Ga0207651_10088113 3300025960 Bacteria 2262
89 Ga0207668_10082462 3300025972 Bacteria 2336
90 Ga0207668_10219315 3300025972 Bacteria 1526
91 Ga0207640_10018786 3300025981 Bacteria 4069
92 Ga0207708_10003089 3300026075 Bacteria 12262
93 Ga0207641_10394849 3300026088 Bacteria 1327
94 Ga0207676_10080656 3300026095 Bacteria 2642
95 Ga0207676_10302697 3300026095 Bacteria 1460
96 Ga0207683_10095114 3300026121 Bacteria 2656
97 Ga0207428_10183627 3300027907 Bacteria 1579
98 Ga0207428_10350091 3300027907 Bacteria 1087
99 Ga0268266_10000624 3300028379 Bacteria 48130
100 Ga0268266_10031590 3300028379 Bacteria 4497
101 Ga0268266_10042000 3300028379 Bacteria 3904
102 Ga0268265_10044465 3300028380 Bacteria 3307
103 Ga0268264_10001634 3300028381 Bacteria 20691
104 Ga0268264_10049228 3300028381 Bacteria 3506
105 Ga0268264_10283567 3300028381 Bacteria 1553
106 Ga0265338_10096908 3300028800 Bacteria 2418
107 Ga0265332_10018881 3300031238 Bacteria 3044
108 Ga0265325_10001408 3300031241 Bacteria 16922
109 Ga0265339_10014605 3300031249 Bacteria 4729
110 Ga0265331_10000201 3300031250 Bacteria 72952
111 Ga0307513_10114802 3300031456 Bacteria 2677
112 Ga0265313_10002752 3300031595 Bacteria 14826
113 Ga0265314_10000448 3300031711 Bacteria 55160
114 Ga0307413_10105196 3300031824 Bacteria 1876
115 Ga0307413_10221417 3300031824 Bacteria 1383
116 Ga0307410_10088941 3300031852 Bacteria 2188
117 Ga0307409_100048787 3300031995 Bacteria 3225
118 Ga0307415_100135810 3300032126 Bacteria 1870
119 Ga0395900_0017205 3300037418 Bacteria 7378
120 Ga0395900_0239220 3300037418 Bacteria 1822
121 Ga0395898_0079737 3300037466 Bacteria 3158
122 Ga0436365_0508370 3300039437 Bacteria 2218
123 Ga0436365_0764423 3300039437 Bacteria 885
124 Ga0453683_0261183 3300044673 Bacteria 1105
125 Ga0466966_0061949 3300044684 Bacteria 2359
126 Ga0466966_0093919 3300044684 Bacteria 1860
127 Ga0466961_0071443 3300044693 Bacteria 2202
128 Ga0466963_0121303 3300044694 Bacteria 1799
129 Ga0466957_0053530 3300044842 Bacteria 2461
130 Ga0466957_0054989 3300044842 Bacteria 2431
131 Ga0466957_0210367 3300044842 Bacteria 1280
132 Ga0466960_0016291 3300044901 Bacteria 3221
133 Ga0466960_0026121 3300044901 Bacteria 2649
134 Ga0466960_0047557 3300044901 Bacteria 2058
135 Ga0466960_0062040 3300044901 Bacteria 1836
136 Ga0466959_0154229 3300045049 Bacteria 1617
137 Ga0466958_0089309 3300045836 Bacteria 1905
138 Ga0466967_0001437 3300045976 Bacteria 13825
139 Ga0466967_0017059 3300045976 Bacteria 5749
140 Ga0466967_0022946 3300045976 Bacteria 5104
141 Ga0466967_0280163 3300045976 Bacteria 1600
142 Ga0495580_0159980 3300046472 Bacteria 1559
143 Ga0495587_0030768 3300046536 Bacteria 3255
144 Ga0495667_0146119 3300046559 Bacteria 1523
145 Ga0495604_0085969 3300047317 Bacteria 2346
146 Ga0496103_0296192 3300048906 Bacteria 1041
147 Ga0496104_0100889 3300048907 Bacteria 2763
148 Ga0496105_0020330 3300048908 Bacteria 5364
149 Ga0496108_0121554 3300048911 Bacteria 2240
150 Ga0496108_0202903 3300048911 Bacteria 1721
151 Ga0496110_0165532 3300048913 Bacteria 2005
152 Ga0496112_0311583 3300048915 Bacteria 1519
153 Ga0496112_0624184 3300048915 Bacteria 1009
154 Ga0496115_0042172 3300048918 Bacteria 3635
155 Ga0501040_0282233 3300049576 Bacteria 1186
156 Ga0501046_0222488 3300049580 Bacteria 1397
157 Ga0501047_0097126 3300049581 Bacteria 2824
158 Ga0501047_0152753 3300049581 Bacteria 2184
159 Ga0501067_0015199 3300049583 Bacteria 4262
160 nmdc:mga08y16_101301_c1 3300050511 Bacteria 2998
161 nmdc:mga0n895_200190_c1 3300050512 Bacteria 2028
162 Ga0495619_0033575 3300053085 Bacteria 3332
163 Ga0500556_0037723 3300053104 Bacteria 1683
164 Ga0466962_0010058 3300061719 Bacteria 4539
165 Ga0466962_0046127 3300061719 Bacteria 2083
166 2583148952 2582580736 Bacteria 5325865
167 2623500909 2622736605 Bacteria 4992138
168 2673166747 2671180531 Bacteria 9045424
169 2816512006 2816332139 Bacteria 9138787
170 2837185988 2837183177 Bacteria 4637169
171 2870786827 2870782633 Bacteria 9624083
172 2915358372 2915358134 Bacteria 6050864
173 8054473308 8054472261 Bacteria 7464355
174 Ga0070679_100256239
175 Ga0065712_10092843
176 Ga0070658_10000787
177 Ga0070658_10109462
178 Ga0070683_100245533
179 Ga0070680_100000852
180 Ga0070680_100249572
181 Ga0070680_100267984
182 Ga0070682_100036662
183 Ga0070682_100183718
184 Ga0070660_100251162
185 Ga0070692_10013812
186 Ga0070668_100151448
187 Ga0070669_100312077
188 Ga0070671_100001440
189 Ga0070659_100269123
190 Ga0070709_10399365
191 Ga0070663_100064106
192 Ga0070662_100221218
193 Ga0070681_10006808
194 Ga0070707_100188787
195 Ga0070679_100000559
196 Ga0070679_100280754
197 Ga0070684_100043005
198 Ga0068853_100634907
199 Ga0070693_100127652
200 Ga0070665_100000628
201 Ga0070665_100005519
202 Ga0070665_100045410
203 Ga0068857_100189975
204 Ga0068854_100022707
205 Ga0068852_100076955
206 Ga0068859_100546959
207 Ga0068864_100224254
208 Ga0068870_10115548
209 Ga0068863_100161221
210 Ga0068860_100001210
211 Ga0068860_100400179
212 Ga0068862_100018822
213 Ga0081455_10000667
214 Ga0070717_10330725
215 Ga0075432_10049757
216 Ga0075428_100001256
217 Ga0075428_100181457
218 Ga0097620_100546929
219 Ga0111539_10261660
220 Ga0111539_10314954
221 Ga0105245_10078742
222 Ga0105243_10113707
223 Ga0105243_10369854
224 Ga0105238_10491212
225 Ga0105238_10622866
226 Ga0105238_10711395
227 Ga0157369_10504539
228 Ga0157372_10164293
229 Ga0157372_10815499
230 Ga0157379_10087188
231 Ga0157376_10571222
232 Ga0206356_11378107
233 Ga0206354_10306721
234 Ga0206354_10806692
235 Ga0206353_11044095
236 Ga0206353_11299278
237 Ga0207699_10329083
238 Ga0207705_10000524
239 Ga0207705_10048813
240 Ga0207684_10025193
241 Ga0207707_10000327
242 Ga0207707_10029574
243 Ga0207660_10000114
244 Ga0207662_10058674
245 Ga0207657_10026069
246 Ga0207657_10250488
247 Ga0207652_10000237
248 Ga0207652_10057892
249 Ga0207646_10060329
250 Ga0207659_10305833
251 Ga0207664_10204083
252 Ga0207644_10022844
253 Ga0207644_10300415
254 Ga0207690_10042208
255 Ga0207706_10033414
256 Ga0207669_10109934
257 Ga0207665_10182035
258 Ga0207691_10075861
259 Ga0207689_10027266
260 Ga0207667_10236689
261 Ga0207651_10088113
262 Ga0207668_10082462
263 Ga0207668_10219315
264 Ga0207640_10018786
265 Ga0207708_10003089
266 Ga0207641_10394849
267 Ga0207676_10080656
268 Ga0207676_10302697
269 Ga0207683_10095114
270 Ga0207428_10183627
271 Ga0207428_10350091
272 Ga0268266_10000624
273 Ga0268266_10031590
274 Ga0268266_10042000
275 Ga0268265_10044465
276 Ga0268264_10001634
277 Ga0268264_10049228
278 Ga0268264_10283567
279 Ga0265338_10096908
280 Ga0265332_10018881
281 Ga0265325_10001408
282 Ga0265339_10014605
283 Ga0265331_10000201
284 Ga0307513_10114802
285 Ga0265313_10002752
286 Ga0265314_10000448
287 Ga0307413_10105196
288 Ga0307413_10221417
289 Ga0307410_10088941
290 Ga0307409_100048787
291 Ga0307415_100135810
292 Ga0395900_0017205
293 Ga0395900_0239220
294 Ga0395898_0079737
295 Ga0436365_0508370
296 Ga0436365_0764423
297 Ga0453683_0261183
298 Ga0466966_0061949
299 Ga0466966_0093919
300 Ga0466961_0071443
301 Ga0466963_0121303
302 Ga0466957_0053530
303 Ga0466957_0054989
304 Ga0466957_0210367
305 Ga0466960_0016291
306 Ga0466960_0026121
307 Ga0466960_0047557
308 Ga0466960_0062040
309 Ga0466959_0154229
310 Ga0466958_0089309
311 Ga0466967_0001437
312 Ga0466967_0017059
313 Ga0466967_0022946
314 Ga0466967_0280163
315 Ga0495580_0159980
316 Ga0495587_0030768
317 Ga0495667_0146119
318 Ga0495604_0085969
319 Ga0496103_0296192
320 Ga0496104_0100889
321 Ga0496105_0020330
322 Ga0496108_0121554
323 Ga0496108_0202903
324 Ga0496110_0165532
325 Ga0496112_0311583
326 Ga0496112_0624184
327 Ga0496115_0042172
328 Ga0501040_0282233
329 Ga0501046_0222488
330 Ga0501047_0097126
331 Ga0501047_0152753
332 Ga0501067_0015199
333 nmdc:mga08y16_101301_c1
334 nmdc:mga0n895_200190_c1
335 Ga0495619_0033575
336 Ga0500556_0037723
337 Ga0466962_0010058
338 Ga0466962_0046127
339 2583148952
340 2623500909
341 2673166747
342 2816512006
343 2837185988
344 2870786827
345 2915358372
346 8054473308

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13714

PEP_mutase

Phosphoenolpyruvate phosphomutase

16

257

0.91

PF00463

ICL

Isocitrate lyase family

69

196

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1xg3-assembly1.cif.gz_D crystal structure of the c123s 2-methylisocitrate lyase mutant from escherichia coli in complex with the reaction product, mg(ii)-pyruvate and succinate 0.9729 3 281
1zlp-assembly1.cif.gz_B petal death protein psr132 with cysteine-linked glutaraldehyde forming a thiohemiacetal adduct 0.9676 9 285
1ujq-assembly1.cif.gz_D crystal structure of 2-methylisocitrate lyase (prpb) from salmonella enterica serovar typhimurium 0.9579 3 277
1xg3-assembly1.cif.gz_D crystal structure of the c123s 2-methylisocitrate lyase mutant from escherichia coli in complex with the reaction product, mg(ii)-pyruvate and succinate 0.9561 3 281
6t5m-assembly1.cif.gz_B crystal structure of 2-methylisocitrate lyase (prpb) from pseudomonas aeruginosa in complex with mg(ii)-pyruvate. 0.9526 3 286
ID Description Score Start End Superfamily
af_Q0IPL3_20_290_3.20.20.60 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9734 26 285 3.20.20.60
af_O49290_35_333_3.20.20.60 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9567 4 291 3.20.20.60
1oqfA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9431 1 286 3.20.20.60
af_Q0IPL3_20_290_3.20.20.60 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9313 26 285 3.20.20.60
5uncD00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.93 6 284 3.20.20.60
ID Description Score Start End GO Terms
AF-A0A352S252-F1-model_v4 Carboxyvinyl-carboxyphosphonate phosphorylmutase 0.9974 23 176 GO:0016833
AF-A0A4Q2L9P1-F1-model_v4 deleted 0.9949 63 167
AF-A0A517YJA8-F1-model_v4 Methylisocitrate lyase (EC 4.1.3.30) 0.9935 3 285 GO:0019629
GO:0046421
AF-T1A887-F1-model_v4 2-methylisocitrate lyase 0.9916 32 193 GO:0019629
GO:0046421
AF-A0A6L7QP25-F1-model_v4 Methylisocitrate lyase 0.991 17 187 GO:0016833

Map