F261825

General Info

Members Datasets Scaffolds Average Seq Length
173 133 172 256

Family's Representative Sequence

Representative Sequence 3300003187|JGI25151J46595_10001467|JGI25151J46595_1000146717
Length 281
Sequence VIAELGAGWSWASQKWALPPLPAVILLSIRVAGVFILTPVFYAMPIPTTVRVLLLLSLSFIVALGFLPAASGQTVDPALMFTSALAELALGATLGLGVLLAFAAFDIAGRLLDIQIGFGIAQVFDPVTRRQVPVLTSAFNTFAVLLFFLLAGHHALLRGIAFSVERFPVAAQWSVAYGLPAMAKQVSALFALGFALVAPVVFCLFMVEMALGVVARNLPQMNMFAIGIPVKIIVGLVTLSLWFAGIGGVMTRVYRGIYTTWDSILTVDAPQGTVPEVIHGR

Samples

Sample ID Description Type Environment
1 2928058823 Ralstonia sp. 1138 Isolate Unclassified
2 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
9 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
10 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
11 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
12 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
13 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
14 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
15 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
16 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
17 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
18 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
19 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
20 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
21 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
22 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
23 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
24 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
25 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
28 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
29 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
30 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
36 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
50 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
51 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
56 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
63 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
65 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
68 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
85 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
86 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
87 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
90 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
91 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
92 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
93 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
94 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
95 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
96 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
97 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
98 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
99 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
100 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
101 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
102 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
103 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
104 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
105 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
106 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
107 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
108 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
109 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
110 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
111 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
112 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
113 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
114 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
115 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
116 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
117 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
118 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
121 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
128 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
129 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
130 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
131 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
132 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
133 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.84
Metatranscriptomes 0
Isolates 1.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 42.2
Nodule 0
Rhizoplane 0.58
Rhizosphere 53.18
Stem 0
Stem Tuber 0
Unclassified 4.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10010014 3300001979 Bacteria 3673
2 JGI25159J45721_1000248 3300002987 Bacteria 25574
3 JGI25151J46595_10000788 3300003187 Bacteria 25574
4 JGI25151J46595_10001467 3300003187 Bacteria 15943
5 JGI25153J46596_10005474 3300003215 Bacteria 6649
6 rootH1_10000282 3300003316 Bacteria 1223
7 rootH1_10000282 3300003323 Bacteria 25914
8 JGI25160J50197_1000454 3300003354 Bacteria 25574
9 Ga0055532_1000204 3300003758 Bacteria 48432
10 Ga0055527_1000155 3300003760 Bacteria 48432
11 Ga0055535_1000321 3300003761 Bacteria 48432
12 Ga0055529_1000373 3300003763 Bacteria 48432
13 Ga0055526_1000253 3300003771 Bacteria 45420
14 Ga0055526_1000730 3300003771 Bacteria 24809
15 Ga0055537_1000148 3300003773 Bacteria 52583
16 Ga0055537_1000726 3300003773 Bacteria 16967
17 Ga0055524_1000057 3300003775 Bacteria 139566
18 Ga0055524_1001060 3300003775 Bacteria 16967
19 Ga0055534_1000725 3300003784 Bacteria 15954
20 Ga0055528_1000196 3300003790 Bacteria 51284
21 Ga0055528_1001171 3300003790 Bacteria 16967
22 Ga0055530_10024158 3300003791 Bacteria 1730
23 Ga0055531_10000485 3300003794 Bacteria 36640
24 Ga0055543_1001718 3300004625 Bacteria 8238
25 Ga0065165_1001323 3300005262 Bacteria 27600
26 Ga0065165_1001473 3300005262 Bacteria 25145
27 Ga0065165_1027406 3300005262 Bacteria 1859
28 Ga0070658_10085052 3300005327 Bacteria 2601
29 Ga0068869_100279392 3300005334 Bacteria 1342
30 Ga0070661_100000862 3300005344 Bacteria 21778
31 Ga0070669_100047401 3300005353 Bacteria 3135
32 Ga0070667_100087502 3300005367 Bacteria 2674
33 Ga0070663_100000067 3300005455 Bacteria 45012
34 Ga0070678_100113251 3300005456 Bacteria 2126
35 Ga0068853_100143143 3300005539 Bacteria 2147
36 Ga0070672_100052464 3300005543 Bacteria 3184
37 Ga0068855_100190294 3300005563 Unclassified 2315
38 Ga0070664_100000176 3300005564 Bacteria 45012
39 Ga0068856_100008081 3300005614 Bacteria 10271
40 Ga0068862_100291678 3300005844 Unclassified 1498
41 Ga0075365_10021010 3300006038 Bacteria 4063
42 Ga0075365_10084673 3300006038 Bacteria 2152
43 Ga0075365_10093996 3300006038 Bacteria 2046
44 Ga0075366_10045624 3300006195 Bacteria 2597
45 Ga0075366_10069674 3300006195 Bacteria 2093
46 Ga0075370_10000428 3300006353 Bacteria 15577
47 Ga0105240_10022094 3300009093 Bacteria 8443
48 Ga0105245_10085098 3300009098 Bacteria 2898
49 Ga0105241_10015996 3300009174 Bacteria 5498
50 Ga0105248_11108688 3300009177 Bacteria 895
51 Ga0157371_10000540 3300013102 Bacteria 45018
52 Ga0157370_10001289 3300013104 Bacteria 31337
53 Ga0157378_10238872 3300013297 Bacteria 1735
54 Ga0163162_10125943 3300013306 Bacteria 2668
55 Ga0157372_10000455 3300013307 Bacteria 45018
56 Ga0182008_10034544 3300014497 Bacteria 2534
57 Ga0157379_10454988 3300014968 Bacteria 1182
58 Ga0163161_10005875 3300017792 Bacteria 8512
59 Ga0213872_10048468 3300021361 Bacteria 1930
60 Ga0209436_100325 3300025208 Bacteria 21687
61 Ga0209672_100137 3300025228 Bacteria 71589
62 Ga0209147_100002 3300025229 Bacteria 2158988
63 Ga0209258_100002 3300025242 Bacteria 2158988
64 Ga0209129_1000404 3300025258 Bacteria 34228
65 Ga0209565_1000028 3300025263 Bacteria 348536
66 Ga0209565_1000750 3300025263 Bacteria 19118
67 Ga0209455_1000009 3300025272 Bacteria 1042273
68 Ga0209673_1000035 3300025273 Bacteria 328411
69 Ga0209673_1000705 3300025273 Bacteria 47171
70 Ga0209673_1005638 3300025273 Bacteria 6249
71 Ga0209673_1005658 3300025273 Bacteria 6238
72 Ga0209130_1000295 3300025284 Bacteria 60748
73 Ga0209675_1000381 3300025291 Bacteria 36963
74 Ga0209675_1008074 3300025291 Bacteria 3928
75 Ga0209675_1017201 3300025291 Unclassified 2072
76 Ga0209676_1004584 3300025292 Bacteria 7634
77 Ga0209676_1006030 3300025292 Bacteria 6111
78 Ga0209025_1000816 3300025294 Bacteria 49835
79 Ga0209025_1002610 3300025294 Bacteria 18554
80 Ga0209564_1000724 3300025295 Bacteria 47354
81 Ga0209564_1000761 3300025295 Bacteria 45472
82 Ga0209564_1003429 3300025295 Bacteria 10867
83 Ga0209758_1001551 3300025297 Bacteria 26395
84 Ga0209050_1007098 3300025298 Bacteria 6402
85 Ga0209050_1021939 3300025298 Bacteria 2306
86 Ga0209256_1000003 3300025299 Bacteria 1661127
87 Ga0209256_1000088 3300025299 Bacteria 217236
88 Ga0207426_1000038 3300025302 Bacteria 441522
89 Ga0207426_1076156 3300025302 Bacteria 922
90 Ga0209051_1002684 3300025303 Bacteria 12429
91 Ga0209051_1031215 3300025303 Bacteria 2054
92 Ga0209257_1001108 3300025304 Bacteria 35000
93 Ga0209257_1006003 3300025304 Bacteria 8125
94 Ga0209257_1031071 3300025304 Bacteria 1714
95 Ga0207705_10090336 3300025909 Bacteria 2242
96 Ga0207695_10062888 3300025913 Bacteria 3828
97 Ga0207649_10000719 3300025920 Bacteria 21791
98 Ga0207681_10579680 3300025923 Unclassified 925
99 Ga0207691_10010225 3300025940 Bacteria 9001
100 Ga0207689_10273642 3300025942 Unclassified 1398
101 Ga0207679_10000221 3300025945 Bacteria 45011
102 Ga0207640_10485293 3300025981 Bacteria 1026
103 Ga0207658_10649477 3300025986 Unclassified 951
104 Ga0207678_10000297 3300026067 Bacteria 44970
105 Ga0207702_10000469 3300026078 Bacteria 45775
106 Ga0207648_10057370 3300026089 Bacteria 3397
107 Ga0207683_10129839 3300026121 Bacteria 2266
108 Ga0207698_10193929 3300026142 Bacteria 1813
109 Ga0307515_10112419 3300028794 Bacteria 3168
110 Ga0307408_100045735 3300031548 Bacteria 3128
111 Ga0265314_10052010 3300031711 Bacteria 2850
112 Ga0307412_10138051 3300031911 Bacteria 1781
113 Ga0307416_100139342 3300032002 Bacteria 2202
114 Ga0307411_10258105 3300032005 Bacteria 1375
115 Ga0395899_0000475 3300037312 Bacteria 45347
116 Ga0395899_0004200 3300037312 Bacteria 11302
117 Ga0395900_0036801 3300037418 Bacteria 5044
118 Ga0395900_0043309 3300037418 Bacteria 4640
119 Ga0395900_0062706 3300037418 Bacteria 3821
120 Ga0395900_0469798 3300037418 Bacteria 1211
121 Ga0395898_0010315 3300037466 Bacteria 9774
122 Ga0395898_0359926 3300037466 Bacteria 1387
123 Ga0395905_0002911 3300037471 Bacteria 18676
124 Ga0395905_0080044 3300037471 Bacteria 3062
125 Ga0395905_0099085 3300037471 Bacteria 2737
126 Ga0395901_0023679 3300038443 Bacteria 6296
127 Ga0395901_0378114 3300038443 Bacteria 1458
128 Ga0395901_0635749 3300038443 Bacteria 1072
129 Ga0436361_0061453 3300039447 Bacteria 13383
130 Ga0439436_0010519 3300041404 Bacteria 2820
131 Ga0439453_0002090 3300041408 Bacteria 2701
132 Ga0439465_0044863 3300041413 Unclassified 1437
133 Ga0439448_0028465 3300042005 Bacteria 1765
134 Ga0450894_033066 3300042131 Bacteria 726
135 Ga0450910_030496 3300042147 Unclassified 846
136 Ga0466969_0050552 3300044656 Bacteria 2049
137 Ga0466969_0124649 3300044656 Bacteria 1197
138 Ga0466966_0117128 3300044684 Bacteria 1639
139 Ga0466961_0294461 3300044693 Unclassified 992
140 Ga0466957_0000004 3300044842 Bacteria 106395
141 Ga0466959_0067187 3300045049 Bacteria 2599
142 Ga0466958_0040341 3300045836 Bacteria 2806
143 Ga0495592_0000195 3300046454 Bacteria 51662
144 Ga0495629_0048047 3300046459 Bacteria 2992
145 Ga0495584_0048872 3300046491 Bacteria 2132
146 Ga0495594_0142456 3300046499 Unclassified 1360
147 Ga0495596_0130131 3300046500 Bacteria 977
148 Ga0495583_0001676 3300046506 Bacteria 21448
149 Ga0495622_0049667 3300046557 Bacteria 1948
150 Ga0495661_0017334 3300046665 Bacteria 4758
151 Ga0495674_0027544 3300047319 Bacteria 5192
152 Ga0495626_0099753 3300048091 Bacteria 1267
153 Ga0496106_0312534 3300048909 Unclassified 1261
154 Ga0496121_0011826 3300048924 Bacteria 9612
155 Ga0496121_0171099 3300048924 Bacteria 1578
156 Ga0496124_0033014 3300048927 Bacteria 4560
157 Ga0496124_0035048 3300048927 Bacteria 4395
158 Ga0501032_0184787 3300049569 Unclassified 1364
159 Ga0501043_0000286 3300049579 Bacteria 45399
160 Ga0501046_0000374 3300049580 Bacteria 45277
161 Ga0501047_0000069 3300049581 Bacteria 129231
162 Ga0501048_0000262 3300049582 Bacteria 35254
163 Ga0501044_0439124 3300049823 Unclassified 1213
164 Ga0501045_0006131 3300049824 Bacteria 8328
165 nmdc:mga0yw44_237189_c1 3300050492 Bacteria 1211
166 nmdc:mga0yw44_49090_c1 3300050492 Bacteria 2546
167 nmdc:mga0yw44_76520_c1 3300050492 Bacteria 2089
168 nmdc:mga0k408_77991_c1 3300050493 Bacteria 1937
169 nmdc:mga07m45_14114_c1 3300050496 Bacteria 4250
170 Ga0500655_000169 3300053133 Bacteria 16024
171 Ga0500616_0081870 3300053153 Bacteria 1620
172 Ga0500638_008319 3300053162 Bacteria 4414

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042131 Ga0450894_033066 Ga0450894_033066_20_646 202
2 3300005543 Ga0070672_100052464 Ga0070672_1000524643 215
3 3300025940 Ga0207691_10010225 Ga0207691_100102252 215
4 3300037471 Ga0395905_0080044 Ga0395905_0080044_1344_2156 216
5 3300042147 Ga0450910_030496 Ga0450910_030496_28_696 216
6 3300006195 Ga0075366_10045624 Ga0075366_100456242 219
7 3300003771 Ga0055526_1000253 Ga0055526_10002532 220
8 3300003773 Ga0055537_1000148 Ga0055537_100014845 220
9 3300003775 Ga0055524_1000057 Ga0055524_100005793 220
10 3300003790 Ga0055528_1000196 Ga0055528_100019630 220
11 3300025263 Ga0209565_1000028 Ga0209565_1000028185 220
12 3300025273 Ga0209673_1000035 Ga0209673_1000035150 220
13 3300025295 Ga0209564_1000761 Ga0209564_10007612 220
14 3300025299 Ga0209256_1000003 Ga0209256_10000031167 220
15 3300005353 Ga0070669_100047401 Ga0070669_1000474013 224
16 3300005456 Ga0070678_100113251 Ga0070678_1001132512 224
17 3300005844 Ga0068862_100291678 Ga0068862_1002916782 224
18 3300006038 Ga0075365_10093996 Ga0075365_100939962 224
19 3300025923 Ga0207681_10579680 Ga0207681_105796802 224
20 3300026121 Ga0207683_10129839 Ga0207683_101298392 224
21 3300050492 nmdc:mga0yw44_237189_c1 nmdc:mga0yw44_237189_c1_196_1071 224
22 3300005367 Ga0070667_100087502 Ga0070667_1000875023 225
23 3300025986 Ga0207658_10649477 Ga0207658_106494771 225
24 3300037312 Ga0395899_0004200 Ga0395899_0004200_727_1518 225
25 3300037418 Ga0395900_0036801 Ga0395900_0036801_1248_2039 225
26 3300037466 Ga0395898_0010315 Ga0395898_0010315_2521_3312 225
27 3300038443 Ga0395901_0023679 Ga0395901_0023679_3883_4674 225
28 3300038443 Ga0395901_0378114 Ga0395901_0378114_702_1442 226
29 3300046499 Ga0495594_0142456 Ga0495594_0142456_145_966 226
30 3300046665 Ga0495661_0017334 Ga0495661_0017334_1481_2242 226
31 3300026089 Ga0207648_10057370 Ga0207648_100573702 227
32 3300032002 Ga0307416_100139342 Ga0307416_1001393422 229
33 3300014968 Ga0157379_10454988 Ga0157379_104549882 230
34 3300025304 Ga0209257_1006003 Ga0209257_10060033 230
35 iso_pu_bacteria 2928115317 2928116469 230
36 3300031711 Ga0265314_10052010 Ga0265314_100520102 231
37 3300032005 Ga0307411_10258105 Ga0307411_102581052 233
38 3300025942 Ga0207689_10273642 Ga0207689_102736423 235
39 3300025273 Ga0209673_1005638 Ga0209673_10056386 236
40 3300037312 Ga0395899_0000475 Ga0395899_0000475_20803_21567 236
41 3300037418 Ga0395900_0043309 Ga0395900_0043309_3620_4384 236
42 3300041413 Ga0439465_0044863 Ga0439465_0044863_232_1023 236
43 3300046500 Ga0495596_0130131 Ga0495596_0130131_66_830 236
44 3300048091 Ga0495626_0099753 Ga0495626_0099753_184_948 236
45 3300005327 Ga0070658_10085052 Ga0070658_100850522 237
46 3300005563 Ga0068855_100190294 Ga0068855_1001902944 237
47 3300025909 Ga0207705_10090336 Ga0207705_100903362 237
48 3300028794 Ga0307515_10112419 Ga0307515_101124192 237
49 3300042005 Ga0439448_0028465 Ga0439448_0028465_430_1191 237
50 3300048909 Ga0496106_0312534 Ga0496106_0312534_287_1048 237
51 3300048927 Ga0496124_0033014 Ga0496124_0033014_3277_4038 237
52 3300053133 Ga0500655_000169 Ga0500655_000169_7688_8527 237
53 3300053153 Ga0500616_0081870 Ga0500616_0081870_405_1280 237
54 3300053162 Ga0500638_008319 Ga0500638_008319_422_1261 237
55 3300005262 Ga0065165_1001473 Ga0065165_10014732 238
56 3300041404 Ga0439436_0010519 Ga0439436_0010519_1637_2428 238
57 3300041408 Ga0439453_0002090 Ga0439453_0002090_884_1675 238
58 3300045836 Ga0466958_0040341 Ga0466958_0040341_829_1590 238
59 3300046491 Ga0495584_0048872 Ga0495584_0048872_413_1177 238
60 3300013297 Ga0157378_10238872 Ga0157378_102388722 239
61 3300048927 Ga0496124_0035048 Ga0496124_0035048_41_802 239
62 3300044842 Ga0466957_0000004 Ga0466957_0000004_74401_75174 241
63 3300045049 Ga0466959_0067187 Ga0466959_0067187_1100_1873 241
64 3300006038 Ga0075365_10021010 Ga0075365_100210103 242
65 3300050492 nmdc:mga0yw44_49090_c1 nmdc:mga0yw44_49090_c1_1694_2500 242
66 3300046459 Ga0495629_0048047 Ga0495629_0048047_417_1238 243
67 3300047319 Ga0495674_0027544 Ga0495674_0027544_2611_3432 243
68 3300044656 Ga0466969_0124649 Ga0466969_0124649_181_1008 245
69 3300009177 Ga0105248_11108688 Ga0105248_111086882 247
70 3300013306 Ga0163162_10125943 Ga0163162_101259433 247
71 3300048924 Ga0496121_0011826 Ga0496121_0011826_279_1043 248
72 3300021361 Ga0213872_10048468 Ga0213872_100484682 249
73 3300037471 Ga0395905_0002911 Ga0395905_0002911_1277_2101 249
74 3300039447 Ga0436361_0061453 Ga0436361_0061453_11160_11927 249
75 3300017792 Ga0163161_10005875 Ga0163161_100058752 250
76 3300044693 Ga0466961_0294461 Ga0466961_0294461_38_829 250
77 3300049569 Ga0501032_0184787 Ga0501032_0184787_89_898 250
78 3300049579 Ga0501043_0000286 Ga0501043_0000286_10971_11780 250
79 3300049580 Ga0501046_0000374 Ga0501046_0000374_33514_34323 250
80 3300049581 Ga0501047_0000069 Ga0501047_0000069_41754_42563 250
81 3300049582 Ga0501048_0000262 Ga0501048_0000262_1055_1864 250
82 3300049823 Ga0501044_0439124 Ga0501044_0439124_237_1046 250
83 3300049824 Ga0501045_0006131 Ga0501045_0006131_509_1318 250
84 3300003323 rootH1_10000282 rootH1_1000028224 251
85 3300003794 Ga0055531_10000485 Ga0055531_1000048528 251
86 3300025273 Ga0209673_1005658 Ga0209673_10056584 251
87 3300025298 Ga0209050_1007098 Ga0209050_10070982 251
88 3300025303 Ga0209051_1002684 Ga0209051_10026841 251
89 3300025304 Ga0209257_1001108 Ga0209257_100110828 251
90 3300050493 nmdc:mga0k408_77991_c1 nmdc:mga0k408_77991_c1_990_1811 252
91 3300006195 Ga0075366_10069674 Ga0075366_100696743 253
92 3300006353 Ga0075370_10000428 Ga0075370_100004283 253
93 3300025981 Ga0207640_10485293 Ga0207640_104852932 253
94 3300050496 nmdc:mga07m45_14114_c1 nmdc:mga07m45_14114_c1_1224_2045 253
95 3300013104 Ga0157370_10001289 Ga0157370_100012895 254
96 3300044656 Ga0466969_0050552 Ga0466969_0050552_61_852 255
97 3300044684 Ga0466966_0117128 Ga0466966_0117128_716_1507 255
98 3300025273 Ga0209673_1000705 Ga0209673_100070531 256
99 3300025295 Ga0209564_1000724 Ga0209564_100072418 256
100 3300025299 Ga0209256_1000088 Ga0209256_1000088147 256
101 3300025302 Ga0207426_1000038 Ga0207426_1000038341 256
102 3300037418 Ga0395900_0062706 Ga0395900_0062706_1791_2579 256
103 3300025291 Ga0209675_1017201 Ga0209675_10172013 257
104 3300026142 Ga0207698_10193929 Ga0207698_101939292 257
105 3300037418 Ga0395900_0469798 Ga0395900_0469798_134_925 257
106 3300037466 Ga0395898_0359926 Ga0395898_0359926_394_1185 257
107 3300046454 Ga0495592_0000195 Ga0495592_0000195_4683_5516 259
108 3300002987 JGI25159J45721_1000248 JGI25159J45721_100024829 260
109 3300003187 JGI25151J46595_10000788 JGI25151J46595_100007883 260
110 3300003215 JGI25153J46596_10005474 JGI25153J46596_100054746 260
111 3300003354 JGI25160J50197_1000454 JGI25160J50197_10004543 260
112 3300003771 Ga0055526_1000730 Ga0055526_100073026 260
113 3300003773 Ga0055537_1000726 Ga0055537_100072617 260
114 3300003775 Ga0055524_1001060 Ga0055524_10010605 260
115 3300003784 Ga0055534_1000725 Ga0055534_10007253 260
116 3300003790 Ga0055528_1001171 Ga0055528_10011715 260
117 3300004625 Ga0055543_1001718 Ga0055543_10017188 260
118 3300005262 Ga0065165_1001323 Ga0065165_10013235 260
119 3300006038 Ga0075365_10084673 Ga0075365_100846734 260
120 3300025208 Ga0209436_100325 Ga0209436_1003254 260
121 3300025258 Ga0209129_1000404 Ga0209129_100040431 260
122 3300025263 Ga0209565_1000750 Ga0209565_10007505 260
123 3300025284 Ga0209130_1000295 Ga0209130_100029540 260
124 3300025291 Ga0209675_1000381 Ga0209675_100038110 260
125 3300025292 Ga0209676_1006030 Ga0209676_10060305 260
126 3300025294 Ga0209025_1000816 Ga0209025_100081637 260
127 3300025297 Ga0209758_1001551 Ga0209758_10015514 260
128 3300025303 Ga0209051_1031215 Ga0209051_10312152 260
129 3300038443 Ga0395901_0635749 Ga0395901_0635749_198_998 260
130 3300046506 Ga0495583_0001676 Ga0495583_0001676_10772_11593 260
131 3300046557 Ga0495622_0049667 Ga0495622_0049667_96_917 260
132 3300050492 nmdc:mga0yw44_76520_c1 nmdc:mga0yw44_76520_c1_444_1244 260
133 3300003187 JGI25151J46595_10001467 JGI25151J46595_1000146717 261
134 3300003791 Ga0055530_10024158 Ga0055530_100241582 261
135 3300005262 Ga0065165_1027406 Ga0065165_10274063 261
136 3300005539 Ga0068853_100143143 Ga0068853_1001431432 261
137 3300025291 Ga0209675_1008074 Ga0209675_10080742 261
138 3300025292 Ga0209676_1004584 Ga0209676_10045847 261
139 3300025294 Ga0209025_1002610 Ga0209025_10026102 261
140 3300025295 Ga0209564_1003429 Ga0209564_10034292 261
141 3300025298 Ga0209050_1021939 Ga0209050_10219392 261
142 3300025302 Ga0207426_1076156 Ga0207426_10761561 261
143 3300025304 Ga0209257_1031071 Ga0209257_10310712 261
144 3300014497 Ga0182008_10034544 Ga0182008_100345443 262
145 3300031548 Ga0307408_100045735 Ga0307408_1000457353 262
146 3300031911 Ga0307412_10138051 Ga0307412_101380513 262
147 3300048924 Ga0496121_0171099 Ga0496121_0171099_137_982 262
148 3300005334 Ga0068869_100279392 Ga0068869_1002793922 263
149 3300009174 Ga0105241_10015996 Ga0105241_100159962 263
150 3300037471 Ga0395905_0099085 Ga0395905_0099085_258_1082 263
151 3300009098 Ga0105245_10085098 Ga0105245_100850982 265
152 iso_pu_bacteria 2928058823 2928062438 265
153 3300003758 Ga0055532_1000204 Ga0055532_10002046 273
154 3300003760 Ga0055527_1000155 Ga0055527_100015536 273
155 3300003761 Ga0055535_1000321 Ga0055535_100032136 273
156 3300003763 Ga0055529_1000373 Ga0055529_100037336 273
157 3300025228 Ga0209672_100137 Ga0209672_10013758 273
158 3300025229 Ga0209147_100002 Ga0209147_100002520 273
159 3300025242 Ga0209258_100002 Ga0209258_100002520 273
160 3300025272 Ga0209455_1000009 Ga0209455_1000009399 273
161 3300001979 JGI24740J21852_10010014 JGI24740J21852_100100143 275
162 3300005344 Ga0070661_100000862 Ga0070661_1000008623 275
163 3300005455 Ga0070663_100000067 Ga0070663_1000000673 275
164 3300005564 Ga0070664_100000176 Ga0070664_1000001764 275
165 3300005614 Ga0068856_100008081 Ga0068856_1000080814 275
166 3300009093 Ga0105240_10022094 Ga0105240_100220944 275
167 3300013102 Ga0157371_10000540 Ga0157371_100005403 275
168 3300013307 Ga0157372_10000455 Ga0157372_100004553 275
169 3300025913 Ga0207695_10062888 Ga0207695_100628883 275
170 3300025920 Ga0207649_10000719 Ga0207649_1000071924 275
171 3300025945 Ga0207679_10000221 Ga0207679_1000022137 275
172 3300026067 Ga0207678_10000297 Ga0207678_100002973 275
173 3300026078 Ga0207702_10000469 Ga0207702_100004694 275

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01311

Bac_export_1

Bacterial export proteins, family 1

21

257

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6r6b-assembly1.cif.gz_F structure of the core shigella flexneri type iii secretion system export gate complex sctrst (spa24/spa9/spa29). 0.6778 14 254
6r6b-assembly1.cif.gz_F structure of the core shigella flexneri type iii secretion system export gate complex sctrst (spa24/spa9/spa29). 0.6662 14 254
8axk-assembly1.cif.gz_F type 3 secretion system export apparatus core, inner rod and needle of shigella flexneri 0.6493 6 252
6s3l-assembly1.cif.gz_F structure of the core of the flagellar export apparatus from vibrio mimicus, the flipqr-flhb complex. 0.6292 18 254
8axk-assembly1.cif.gz_F type 3 secretion system export apparatus core, inner rod and needle of shigella flexneri 0.6263 6 252
ID Description Score Start End Superfamily
af_P09348_118_240_1.20.58.220 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Phosphate transport system protein phou homolog 2; domain 2 0.3457 100 253 1.20.58.220
af_P09348_118_240_1.20.58.220 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Phosphate transport system protein phou homolog 2; domain 2 0.3309 100 253 1.20.58.220
af_P00850_67_224_1.20.120.220 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);ATP synthase, F0 complex, subunit A 0.3289 133 250 1.20.120.220
af_A0A0P0UYK1_1_196_1.20.1270.60 Mainly Alpha;Up-down Bundle;Substrate Binding Domain Of Dnak; Chain:A; Domain 2;Arfaptin homology (AH) domain/BAR domain 0.316 88 252 1.20.1270.60
af_P00854_92_259_1.20.120.220 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);ATP synthase, F0 complex, subunit A 0.2943 134 255 1.20.120.220
ID Description Score Start End GO Terms
AF-A0A2E7EPP7-F1-model_v4 Type III secretion protein 0.7337 11 253 GO:0005886
GO:0006605
AF-A0A832NGI8-F1-model_v4 Type III secretion protein 0.7335 12 253 GO:0005886
GO:0006605
AF-A0A7X6UW48-F1-model_v4 Flagellar biosynthetic protein FliR 0.7333 9 254 GO:0005886
GO:0006605
AF-D5WPG5-F1-model_v4 Flagellar biosynthetic protein FliR 0.7329 11 253 GO:0005886
GO:0006605
AF-G2JAI6-F1-model_v4 Type III escT secretion system protein 0.7307 11 254 GO:0005886
GO:0006605

Feature Viewer

pLDDT pTM Quality
69.83 0.66 Medium
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Predicted Structure (AlphaFold2)

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