F261734
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 172 | 144 | 151 | 270 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2958458903|2958461561 |
| Length | 290 |
| Sequence | RRNDRHNIQYQLKLVSLNRTGIMEYQVNYITSEIKLSNYTGRLFKTEAAFDDHLLVWLISGETKIIQADESFIFGAGSTFLIPRNQLATIINTPKDGLPHQAVAMHLSAQRLKDFYSHVNPAPKISKSSIFSFGQHPLLSSCMASLIPYFEMQESFPENIASLKITEAITILRTINKDIDSILSDFAAPGKIDLAAFMEKNFMFNMSLEKFGYLTGRSLTTFKRDFYKAFNLTPQRWLTKKRLETAYYQLTEKNRKPSDIYYEIGFENLSHFSFAFKKQFGCSPTDLTKI |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 2 | 2519899754 | Flavobacterium sp. F52 | Isolate | Rhizosphere |
| 3 | 2643221600 | Flavobacterium sp. Root186 | Isolate | Unclassified |
| 4 | 2643221716 | Flavobacterium sp. Root901 | Isolate | Unclassified |
| 5 | 2738541278 | Niastella sp. CF465 | Isolate | Unclassified |
| 6 | 2739367857 | Flavobacterium sp. GV029 | Isolate | Unclassified |
| 7 | 2739367858 | Flavobacterium sp. GV028 | Isolate | Unclassified |
| 8 | 2857613821 | Flavobacterium sp. R-72247 | Isolate | Unclassified |
| 9 | 2896109856 | Chitinophaga sp. SYP-B3965 | Isolate | Rhizosphere |
| 10 | 2902048731 | Pedobacter ureilyticus THG-T11 | Isolate | Rhizosphere |
| 11 | 2904419702 | Flavobacterium sp. 1355 | Isolate | Rhizosphere |
| 12 | 2919191525 | Flavobacterium sp. 2755 | Isolate | Rhizosphere |
| 13 | 2919509842 | Flavobacterium arsenatis 3773 | Isolate | Unclassified |
| 14 | 2919692658 | Algoriphagus sp. 4150 | Isolate | Rhizosphere |
| 15 | 2929177148 | Chitinophaga sp. R-72269 Hybrid assembly | Isolate | Unclassified |
| 16 | 2945977869 | Chitinophaga sp. W2I13 | Isolate | Rhizosphere |
| 17 | 2946013367 | Chitinophaga sp. W3I9 | Isolate | Rhizosphere |
| 18 | 2958458903 | Flavobacterium anhuiense RCM74 | Isolate | Rhizosphere |
| 19 | 2977232053 | Mucilaginibacter terrae SORGH_AS 422 | Isolate | Unclassified |
| 20 | 2977268062 | Flavobacterium sp. SORGH_AS 622 | Isolate | Unclassified |
| 21 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 22 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 23 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 24 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 25 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 26 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 27 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 28 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 29 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 30 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 31 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 32 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 33 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 35 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 36 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 37 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 38 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 39 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 40 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 41 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 42 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 43 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 44 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 45 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 46 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 47 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 48 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 49 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 51 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 52 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 53 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 55 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 56 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 57 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 58 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 59 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 60 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 61 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 62 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 63 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 64 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 65 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 66 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 67 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 68 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 69 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 70 | 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 95 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 96 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 97 | 3300031649 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM | Metagenome | Unclassified |
| 98 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 99 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 100 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 101 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 102 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 103 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 104 | 3300042014 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 | Metagenome | Rhizosphere |
| 105 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046457 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300046492 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300046538 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere | Metagenome | Rhizosphere |
| 114 | 3300046557 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046648 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046665 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046684 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300047323 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 126 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 127 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 128 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 129 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 130 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300049671 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought | Metagenome | Rhizosphere |
| 132 | 3300049776 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought | Metagenome | Rhizosphere |
| 133 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 134 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 135 | 3300053098 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere | Metagenome | Endosphere |
| 136 | 3300053108 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere | Metagenome | Endosphere |
| 137 | 3300053116 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere | Metagenome | Endosphere |
| 138 | 3300053133 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere | Metagenome | Endosphere |
| 139 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 140 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 141 | 3300053151 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere | Metagenome | Endosphere |
| 142 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 143 | 3300053158 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere | Metagenome | Endosphere |
| 144 | 8003151029 | Chitinophaga sp. GbtcB8 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 87.79 |
| Metatranscriptomes | 0 |
| Isolates | 12.21 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 8.72 |
| Nodule | 0 |
| Rhizoplane | 0 |
| Rhizosphere | 71.51 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 19.77 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | SwRhRL2b_contig_1184230 | 2162886007 | Bacteria | 3087 |
| 2 | JGI24740J21852_10008633 | 3300001979 | Bacteria | 4048 |
| 3 | JGI25162J39368_1000008 | 3300002737 | Bacteria | 397212 |
| 4 | rootH1_10006268 | 3300003316 | Bacteria | 2471 |
| 5 | rootH1_10173315 | 3300003316 | Unclassified | 1732 |
| 6 | rootH2_10013860 | 3300003320 | Bacteria | 41509 |
| 7 | rootL2_10061309 | 3300003322 | Bacteria | 13838 |
| 8 | rootH1_10003055 | 3300003323 | Bacteria | 18939 |
| 9 | rootH1_10011868 | 3300003323 | Bacteria | 18970 |
| 10 | rootH1_10134168 | 3300003323 | Unclassified | 1699 |
| 11 | rootH1_10146389 | 3300003323 | Bacteria | 2323 |
| 12 | Ga0065704_10086082 | 3300005289 | Bacteria | 3156 |
| 13 | Ga0068869_100081128 | 3300005334 | Bacteria | 2422 |
| 14 | Ga0070666_10045724 | 3300005335 | Bacteria | 2935 |
| 15 | Ga0070666_10151311 | 3300005335 | Bacteria | 1619 |
| 16 | Ga0070682_100018042 | 3300005337 | Bacteria | 4119 |
| 17 | Ga0068868_100034348 | 3300005338 | Bacteria | 3914 |
| 18 | Ga0070668_100356302 | 3300005347 | Bacteria | 1239 |
| 19 | Ga0070669_100168147 | 3300005353 | Bacteria | 1708 |
| 20 | Ga0070674_100035836 | 3300005356 | Bacteria | 3326 |
| 21 | Ga0070673_100079994 | 3300005364 | Bacteria | 2647 |
| 22 | Ga0070688_100223578 | 3300005365 | Bacteria | 1328 |
| 23 | Ga0070667_100524384 | 3300005367 | Bacteria | 1087 |
| 24 | Ga0070678_100114274 | 3300005456 | Bacteria | 2117 |
| 25 | Ga0070662_100497426 | 3300005457 | Unclassified | 1017 |
| 26 | Ga0068867_100237791 | 3300005459 | Bacteria | 1475 |
| 27 | Ga0070672_100212753 | 3300005543 | Bacteria | 1619 |
| 28 | Ga0070665_100357893 | 3300005548 | Bacteria | 1465 |
| 29 | Ga0068854_100221984 | 3300005578 | Bacteria | 1495 |
| 30 | Ga0068856_100066210 | 3300005614 | Bacteria | 3570 |
| 31 | Ga0068866_10016394 | 3300005718 | Bacteria | 3312 |
| 32 | Ga0068870_10016256 | 3300005840 | Bacteria | 3551 |
| 33 | Ga0068860_100216778 | 3300005843 | Bacteria | 1858 |
| 34 | Ga0075366_10017385 | 3300006195 | Bacteria | 4139 |
| 35 | Ga0097621_100050888 | 3300006237 | Bacteria | 3370 |
| 36 | Ga0068871_100357557 | 3300006358 | Bacteria | 1293 |
| 37 | Ga0068865_100043467 | 3300006881 | Bacteria | 3070 |
| 38 | Ga0105240_10049392 | 3300009093 | Bacteria | 5310 |
| 39 | Ga0111539_10515703 | 3300009094 | Bacteria | 1393 |
| 40 | Ga0105241_10225586 | 3300009174 | Bacteria | 1577 |
| 41 | Ga0105237_10003233 | 3300009545 | Bacteria | 19486 |
| 42 | Ga0105237_10020594 | 3300009545 | Bacteria | 6796 |
| 43 | Ga0105238_10022176 | 3300009551 | Bacteria | 6476 |
| 44 | Ga0105239_10000038 | 3300010375 | Bacteria | 205230 |
| 45 | Ga0105239_10000146 | 3300010375 | Bacteria | 101177 |
| 46 | Ga0105239_10153824 | 3300010375 | Bacteria | 2568 |
| 47 | Ga0105246_10186872 | 3300011119 | Bacteria | 1600 |
| 48 | Ga0157373_10000078 | 3300013100 | Bacteria | 84103 |
| 49 | Ga0157371_10000201 | 3300013102 | Bacteria | 87780 |
| 50 | Ga0157371_10003606 | 3300013102 | Bacteria | 13952 |
| 51 | Ga0157371_10045119 | 3300013102 | Unclassified | 3137 |
| 52 | Ga0157370_10002214 | 3300013104 | Bacteria | 23719 |
| 53 | Ga0157370_10009319 | 3300013104 | Bacteria | 10510 |
| 54 | Ga0157369_10001121 | 3300013105 | Bacteria | 33501 |
| 55 | Ga0157374_10037640 | 3300013296 | Bacteria | 4442 |
| 56 | Ga0163162_10001752 | 3300013306 | Bacteria | 20345 |
| 57 | Ga0157375_10110144 | 3300013308 | Bacteria | 2850 |
| 58 | Ga0157380_10568272 | 3300014326 | Bacteria | 1116 |
| 59 | Ga0157376_10018383 | 3300014969 | Bacteria | 5358 |
| 60 | Ga0157376_10604988 | 3300014969 | Bacteria | 1091 |
| 61 | Ga0182006_1002094 | 3300015261 | Bacteria | 11144 |
| 62 | Ga0182006_1005968 | 3300015261 | Bacteria | 5720 |
| 63 | Ga0207426_1001549 | 3300025302 | Bacteria | 18689 |
| 64 | Ga0207642_10130469 | 3300025899 | Bacteria | 1311 |
| 65 | Ga0207680_10065263 | 3300025903 | Bacteria | 2234 |
| 66 | Ga0207680_10096876 | 3300025903 | Bacteria | 1888 |
| 67 | Ga0207647_10107912 | 3300025904 | Bacteria | 1647 |
| 68 | Ga0207645_10003209 | 3300025907 | Bacteria | 12509 |
| 69 | Ga0207671_10010960 | 3300025914 | Bacteria | 7427 |
| 70 | Ga0207694_10390258 | 3300025924 | Unclassified | 1156 |
| 71 | Ga0207650_10442048 | 3300025925 | Bacteria | 1081 |
| 72 | Ga0207659_10285924 | 3300025926 | Bacteria | 1350 |
| 73 | Ga0207706_10496088 | 3300025933 | Bacteria | 1054 |
| 74 | Ga0207704_10175566 | 3300025938 | Bacteria | 1542 |
| 75 | Ga0207691_10127337 | 3300025940 | Bacteria | 2252 |
| 76 | Ga0207689_10004369 | 3300025942 | Bacteria | 12864 |
| 77 | Ga0207689_10107393 | 3300025942 | Unclassified | 2294 |
| 78 | Ga0207651_10033178 | 3300025960 | Bacteria | 3327 |
| 79 | Ga0207668_10076026 | 3300025972 | Bacteria | 2416 |
| 80 | Ga0207640_10058289 | 3300025981 | Bacteria | 2543 |
| 81 | Ga0207658_10082520 | 3300025986 | Bacteria | 2469 |
| 82 | Ga0207677_10202381 | 3300026023 | Bacteria | 1579 |
| 83 | Ga0207702_10048798 | 3300026078 | Bacteria | 3571 |
| 84 | Ga0207648_10002363 | 3300026089 | Bacteria | 20364 |
| 85 | Ga0207674_10159823 | 3300026116 | Bacteria | 2208 |
| 86 | Ga0207675_100142950 | 3300026118 | Bacteria | 2274 |
| 87 | Ga0207683_10073018 | 3300026121 | Unclassified | 3035 |
| 88 | Ga0268266_10160325 | 3300028379 | Bacteria | 2034 |
| 89 | Ga0268265_10668613 | 3300028380 | Bacteria | 1000 |
| 90 | Ga0307515_10000003 | 3300028794 | Bacteria | 891317 |
| 91 | Ga0307515_10001268 | 3300028794 | Bacteria | 57400 |
| 92 | Ga0307515_10072720 | 3300028794 | Bacteria | 4633 |
| 93 | Ga0307513_10047768 | 3300031456 | Unclassified | 4653 |
| 94 | Ga0307513_10205479 | 3300031456 | Bacteria | 1806 |
| 95 | Ga0307408_100150697 | 3300031548 | Bacteria | 1835 |
| 96 | Ga0307514_10161570 | 3300031649 | Unclassified | 1481 |
| 97 | Ga0307405_10064489 | 3300031731 | Bacteria | 2329 |
| 98 | Ga0307410_10006791 | 3300031852 | Bacteria | 6208 |
| 99 | Ga0307406_10000481 | 3300031901 | Bacteria | 23034 |
| 100 | Ga0307414_10000008 | 3300032004 | Bacteria | 375832 |
| 101 | Ga0307411_10011005 | 3300032005 | Bacteria | 4857 |
| 102 | Ga0307510_10000406 | 3300033180 | Bacteria | 41007 |
| 103 | Ga0439457_004818 | 3300042014 | Unclassified | 3473 |
| 104 | Ga0495627_008361 | 3300046453 | Bacteria | 3887 |
| 105 | Ga0495590_0005361 | 3300046457 | Bacteria | 5089 |
| 106 | Ga0495638_0000026 | 3300046460 | Bacteria | 347061 |
| 107 | Ga0495650_0000280 | 3300046471 | Bacteria | 97560 |
| 108 | Ga0495650_0086081 | 3300046471 | Bacteria | 1203 |
| 109 | Ga0495585_0000879 | 3300046492 | Bacteria | 25590 |
| 110 | Ga0495583_0020054 | 3300046506 | Bacteria | 3474 |
| 111 | Ga0495606_0016168 | 3300046507 | Bacteria | 5705 |
| 112 | Ga0495606_0076026 | 3300046507 | Bacteria | 2100 |
| 113 | Ga0495648_0029863 | 3300046524 | Bacteria | 3612 |
| 114 | Ga0495609_0002632 | 3300046538 | Bacteria | 10901 |
| 115 | Ga0495622_0025037 | 3300046557 | Bacteria | 2787 |
| 116 | Ga0495668_0000044 | 3300046616 | Bacteria | 227585 |
| 117 | Ga0495668_0017912 | 3300046616 | Bacteria | 4102 |
| 118 | Ga0495611_0000179 | 3300046648 | Bacteria | 45869 |
| 119 | Ga0495625_0002496 | 3300046660 | Bacteria | 19821 |
| 120 | Ga0495625_0017230 | 3300046660 | Bacteria | 5656 |
| 121 | Ga0495661_0013087 | 3300046665 | Bacteria | 5582 |
| 122 | Ga0495658_0050173 | 3300046683 | Bacteria | 2359 |
| 123 | Ga0495669_0141500 | 3300046684 | Bacteria | 1136 |
| 124 | Ga0495600_0087823 | 3300046809 | Bacteria | 2028 |
| 125 | Ga0495683_0018294 | 3300047323 | Bacteria | 3625 |
| 126 | Ga0495687_000006 | 3300047443 | Bacteria | 571936 |
| 127 | Ga0495686_0000402 | 3300047472 | Bacteria | 68501 |
| 128 | Ga0495686_0011967 | 3300047472 | Bacteria | 6098 |
| 129 | Ga0495686_0065138 | 3300047472 | Bacteria | 2254 |
| 130 | Ga0496116_0000079 | 3300048919 | Bacteria | 226744 |
| 131 | Ga0496116_0000390 | 3300048919 | Bacteria | 64244 |
| 132 | Ga0496121_0103390 | 3300048924 | Bacteria | 2191 |
| 133 | Ga0496124_0012556 | 3300048927 | Bacteria | 8347 |
| 134 | Ga0496125_0000567 | 3300048928 | Bacteria | 63543 |
| 135 | Ga0496126_0003504 | 3300048929 | Bacteria | 19774 |
| 136 | Ga0496126_0148421 | 3300048929 | Bacteria | 2012 |
| 137 | Ga0495678_008361 | 3300049459 | Bacteria | 5229 |
| 138 | Ga0501238_000421 | 3300049671 | Bacteria | 5067 |
| 139 | Ga0501280_000384 | 3300049776 | Bacteria | 10780 |
| 140 | nmdc:mga0k408_177_c3 | 3300050493 | Bacteria | 27094 |
| 141 | Ga0500641_0000446 | 3300053096 | Bacteria | 14977 |
| 142 | Ga0500650_0114406 | 3300053098 | Bacteria | 1259 |
| 143 | Ga0500562_002882 | 3300053108 | Unclassified | 4287 |
| 144 | Ga0500592_007282 | 3300053116 | Bacteria | 1760 |
| 145 | Ga0500655_023658 | 3300053133 | Bacteria | 1161 |
| 146 | Ga0500559_0043551 | 3300053136 | Bacteria | 1961 |
| 147 | Ga0500568_0018952 | 3300053139 | Bacteria | 3002 |
| 148 | Ga0500604_0039981 | 3300053151 | Bacteria | 1412 |
| 149 | Ga0500622_0000009 | 3300053156 | Bacteria | 419980 |
| 150 | Ga0500622_0000016 | 3300053156 | Bacteria | 337983 |
| 151 | Ga0500627_0118436 | 3300053158 | Bacteria | 1194 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300005337 | Ga0070682_100018042 | Ga0070682_1000180422 | 236 |
| 2 | 3300049776 | Ga0501280_000384 | Ga0501280_000384_10037_10756 | 236 |
| 3 | 3300025942 | Ga0207689_10107393 | Ga0207689_101073931 | 237 |
| 4 | 3300048929 | Ga0496126_0148421 | Ga0496126_0148421_1087_1812 | 240 |
| 5 | 3300053116 | Ga0500592_007282 | Ga0500592_007282_299_1024 | 240 |
| 6 | 3300009094 | Ga0111539_10515703 | Ga0111539_105157031 | 242 |
| 7 | 3300014326 | Ga0157380_10568272 | Ga0157380_105682722 | 242 |
| 8 | 3300046684 | Ga0495669_0141500 | Ga0495669_0141500_186_917 | 242 |
| 9 | 3300047323 | Ga0495683_0018294 | Ga0495683_0018294_1963_2694 | 242 |
| 10 | iso_pu_bacteria | 2902048731 | 2902052497 | 263 |
| 11 | 3300010375 | Ga0105239_10000038 | Ga0105239_1000003886 | 264 |
| 12 | iso_pu_bacteria | 2738541278 | 2738729653 | 264 |
| 13 | iso_pu_bacteria | 2519899754 | 2520878719 | 265 |
| 14 | iso_pu_bacteria | 2643221600 | 2644010137 | 265 |
| 15 | iso_pu_bacteria | 2643221716 | 2644644407 | 265 |
| 16 | iso_pu_bacteria | 2739367857 | 2740001193 | 265 |
| 17 | iso_pu_bacteria | 2739367858 | 2740006009 | 265 |
| 18 | iso_pu_bacteria | 2857613821 | 2857618123 | 265 |
| 19 | iso_pu_bacteria | 2896109856 | 2896111896 | 265 |
| 20 | iso_pu_bacteria | 2904419702 | 2904423814 | 265 |
| 21 | iso_pu_bacteria | 2919191525 | 2919191736 | 265 |
| 22 | iso_pu_bacteria | 2919509842 | 2919510761 | 265 |
| 23 | iso_pu_bacteria | 2929177148 | 2929180202 | 265 |
| 24 | iso_pu_bacteria | 2945977869 | 2945982606 | 265 |
| 25 | iso_pu_bacteria | 2946013367 | 2946017998 | 265 |
| 26 | iso_pu_bacteria | 2977232053 | 2977233503 | 265 |
| 27 | iso_pu_bacteria | 2977268062 | 2977270499 | 265 |
| 28 | iso_pu_bacteria | 8003151029 | 8003156559 | 265 |
| 29 | iso_pu_bacteria | 8003151029 | 8003156567 | 265 |
| 30 | 3300003316 | rootH1_10006268 | rootH1_100062683 | 266 |
| 31 | 3300003320 | rootH2_10013860 | rootH2_100138607 | 266 |
| 32 | 3300013306 | Ga0163162_10001752 | Ga0163162_100017528 | 266 |
| 33 | 3300046471 | Ga0495650_0000280 | Ga0495650_0000280_30161_30964 | 266 |
| 34 | 3300046506 | Ga0495583_0020054 | Ga0495583_0020054_116_919 | 266 |
| 35 | 3300046648 | Ga0495611_0000179 | Ga0495611_0000179_28072_28875 | 266 |
| 36 | 3300046665 | Ga0495661_0013087 | Ga0495661_0013087_2909_3712 | 266 |
| 37 | iso_pu_bacteria | 2919692658 | 2919694797 | 266 |
| 38 | 3300003322 | rootL2_10061309 | rootL2_1006130910 | 267 |
| 39 | 3300003323 | rootH1_10003055 | rootH1_1000305516 | 267 |
| 40 | 3300003323 | rootH1_10134168 | rootH1_101341682 | 267 |
| 41 | 3300003323 | rootH1_10146389 | rootH1_101463892 | 267 |
| 42 | 3300005614 | Ga0068856_100066210 | Ga0068856_1000662102 | 267 |
| 43 | 3300009093 | Ga0105240_10049392 | Ga0105240_100493922 | 267 |
| 44 | 3300009545 | Ga0105237_10003233 | Ga0105237_100032333 | 267 |
| 45 | 3300009551 | Ga0105238_10022176 | Ga0105238_100221766 | 267 |
| 46 | 3300010375 | Ga0105239_10000146 | Ga0105239_1000014642 | 267 |
| 47 | 3300025914 | Ga0207671_10010960 | Ga0207671_100109606 | 267 |
| 48 | 3300025924 | Ga0207694_10390258 | Ga0207694_103902581 | 267 |
| 49 | 3300026078 | Ga0207702_10048798 | Ga0207702_100487984 | 267 |
| 50 | 3300033180 | Ga0307510_10000406 | Ga0307510_100004069 | 267 |
| 51 | 3300053096 | Ga0500641_0000446 | Ga0500641_0000446_13666_14472 | 267 |
| 52 | 3300053108 | Ga0500562_002882 | Ga0500562_002882_863_1669 | 267 |
| 53 | 3300002737 | JGI25162J39368_1000008 | JGI25162J39368_100000886 | 268 |
| 54 | 3300005334 | Ga0068869_100081128 | Ga0068869_1000811284 | 268 |
| 55 | 3300005335 | Ga0070666_10045724 | Ga0070666_100457242 | 268 |
| 56 | 3300005335 | Ga0070666_10151311 | Ga0070666_101513112 | 268 |
| 57 | 3300005338 | Ga0068868_100034348 | Ga0068868_1000343482 | 268 |
| 58 | 3300005347 | Ga0070668_100356302 | Ga0070668_1003563021 | 268 |
| 59 | 3300005353 | Ga0070669_100168147 | Ga0070669_1001681472 | 268 |
| 60 | 3300005356 | Ga0070674_100035836 | Ga0070674_1000358362 | 268 |
| 61 | 3300005364 | Ga0070673_100079994 | Ga0070673_1000799942 | 268 |
| 62 | 3300005365 | Ga0070688_100223578 | Ga0070688_1002235781 | 268 |
| 63 | 3300005456 | Ga0070678_100114274 | Ga0070678_1001142742 | 268 |
| 64 | 3300005457 | Ga0070662_100497426 | Ga0070662_1004974262 | 268 |
| 65 | 3300005459 | Ga0068867_100237791 | Ga0068867_1002377912 | 268 |
| 66 | 3300005543 | Ga0070672_100212753 | Ga0070672_1002127531 | 268 |
| 67 | 3300005548 | Ga0070665_100357893 | Ga0070665_1003578932 | 268 |
| 68 | 3300005578 | Ga0068854_100221984 | Ga0068854_1002219842 | 268 |
| 69 | 3300005718 | Ga0068866_10016394 | Ga0068866_100163942 | 268 |
| 70 | 3300005840 | Ga0068870_10016256 | Ga0068870_100162562 | 268 |
| 71 | 3300005843 | Ga0068860_100216778 | Ga0068860_1002167781 | 268 |
| 72 | 3300006237 | Ga0097621_100050888 | Ga0097621_1000508884 | 268 |
| 73 | 3300006358 | Ga0068871_100357557 | Ga0068871_1003575571 | 268 |
| 74 | 3300006881 | Ga0068865_100043467 | Ga0068865_1000434671 | 268 |
| 75 | 3300009174 | Ga0105241_10225586 | Ga0105241_102255861 | 268 |
| 76 | 3300010375 | Ga0105239_10153824 | Ga0105239_101538242 | 268 |
| 77 | 3300011119 | Ga0105246_10186872 | Ga0105246_101868721 | 268 |
| 78 | 3300013102 | Ga0157371_10000201 | Ga0157371_1000020187 | 268 |
| 79 | 3300013296 | Ga0157374_10037640 | Ga0157374_100376403 | 268 |
| 80 | 3300013308 | Ga0157375_10110144 | Ga0157375_101101441 | 268 |
| 81 | 3300014969 | Ga0157376_10018383 | Ga0157376_100183833 | 268 |
| 82 | 3300025899 | Ga0207642_10130469 | Ga0207642_101304692 | 268 |
| 83 | 3300025903 | Ga0207680_10065263 | Ga0207680_100652633 | 268 |
| 84 | 3300025903 | Ga0207680_10096876 | Ga0207680_100968762 | 268 |
| 85 | 3300025907 | Ga0207645_10003209 | Ga0207645_100032099 | 268 |
| 86 | 3300025925 | Ga0207650_10442048 | Ga0207650_104420482 | 268 |
| 87 | 3300025926 | Ga0207659_10285924 | Ga0207659_102859242 | 268 |
| 88 | 3300025933 | Ga0207706_10496088 | Ga0207706_104960881 | 268 |
| 89 | 3300025938 | Ga0207704_10175566 | Ga0207704_101755662 | 268 |
| 90 | 3300025940 | Ga0207691_10127337 | Ga0207691_101273371 | 268 |
| 91 | 3300025942 | Ga0207689_10004369 | Ga0207689_100043693 | 268 |
| 92 | 3300025960 | Ga0207651_10033178 | Ga0207651_100331781 | 268 |
| 93 | 3300025972 | Ga0207668_10076026 | Ga0207668_100760261 | 268 |
| 94 | 3300025981 | Ga0207640_10058289 | Ga0207640_100582892 | 268 |
| 95 | 3300025986 | Ga0207658_10082520 | Ga0207658_100825201 | 268 |
| 96 | 3300026023 | Ga0207677_10202381 | Ga0207677_102023811 | 268 |
| 97 | 3300026089 | Ga0207648_10002363 | Ga0207648_1000236321 | 268 |
| 98 | 3300026116 | Ga0207674_10159823 | Ga0207674_101598234 | 268 |
| 99 | 3300026118 | Ga0207675_100142950 | Ga0207675_1001429502 | 268 |
| 100 | 3300026121 | Ga0207683_10073018 | Ga0207683_100730182 | 268 |
| 101 | 3300028379 | Ga0268266_10160325 | Ga0268266_101603252 | 268 |
| 102 | 3300028380 | Ga0268265_10668613 | Ga0268265_106686131 | 268 |
| 103 | 3300028794 | Ga0307515_10001268 | Ga0307515_1000126836 | 268 |
| 104 | 3300042014 | Ga0439457_004818 | Ga0439457_004818_617_1426 | 268 |
| 105 | 3300046457 | Ga0495590_0005361 | Ga0495590_0005361_1905_2711 | 268 |
| 106 | 3300046460 | Ga0495638_0000026 | Ga0495638_0000026_96845_97702 | 268 |
| 107 | 3300046471 | Ga0495650_0086081 | Ga0495650_0086081_370_1179 | 268 |
| 108 | 3300046507 | Ga0495606_0016168 | Ga0495606_0016168_2233_3042 | 268 |
| 109 | 3300046616 | Ga0495668_0017912 | Ga0495668_0017912_1210_2019 | 268 |
| 110 | 3300047443 | Ga0495687_000006 | Ga0495687_000006_534597_535406 | 268 |
| 111 | 3300047472 | Ga0495686_0000402 | Ga0495686_0000402_59319_60128 | 268 |
| 112 | 3300047472 | Ga0495686_0011967 | Ga0495686_0011967_2131_2940 | 268 |
| 113 | 3300047472 | Ga0495686_0065138 | Ga0495686_0065138_83_892 | 268 |
| 114 | 3300053151 | Ga0500604_0039981 | Ga0500604_0039981_168_977 | 268 |
| 115 | 3300053158 | Ga0500627_0118436 | Ga0500627_0118436_15_824 | 268 |
| 116 | iso_pu_bacteria | 2958458903 | 2958461561 | 268 |
| 117 | 2162886007 | SwRhRL2b_contig_1184230 | SwRhRL2b_0598.00005610 | 269 |
| 118 | 3300001979 | JGI24740J21852_10008633 | JGI24740J21852_100086332 | 269 |
| 119 | 3300003316 | rootH1_10173315 | rootH1_101733151 | 269 |
| 120 | 3300003323 | rootH1_10011868 | rootH1_100118686 | 269 |
| 121 | 3300005289 | Ga0065704_10086082 | Ga0065704_100860823 | 269 |
| 122 | 3300005367 | Ga0070667_100524384 | Ga0070667_1005243841 | 269 |
| 123 | 3300006195 | Ga0075366_10017385 | Ga0075366_100173854 | 269 |
| 124 | 3300009545 | Ga0105237_10020594 | Ga0105237_100205944 | 269 |
| 125 | 3300013100 | Ga0157373_10000078 | Ga0157373_1000007817 | 269 |
| 126 | 3300013102 | Ga0157371_10003606 | Ga0157371_100036062 | 269 |
| 127 | 3300013102 | Ga0157371_10045119 | Ga0157371_100451192 | 269 |
| 128 | 3300013104 | Ga0157370_10002214 | Ga0157370_1000221416 | 269 |
| 129 | 3300013104 | Ga0157370_10009319 | Ga0157370_1000931910 | 269 |
| 130 | 3300013105 | Ga0157369_10001121 | Ga0157369_1000112114 | 269 |
| 131 | 3300014969 | Ga0157376_10604988 | Ga0157376_106049881 | 269 |
| 132 | 3300015261 | Ga0182006_1002094 | Ga0182006_10020942 | 269 |
| 133 | 3300015261 | Ga0182006_1005968 | Ga0182006_10059688 | 269 |
| 134 | 3300025302 | Ga0207426_1001549 | Ga0207426_10015495 | 269 |
| 135 | 3300025904 | Ga0207647_10107912 | Ga0207647_101079122 | 269 |
| 136 | 3300028794 | Ga0307515_10000003 | Ga0307515_10000003437 | 269 |
| 137 | 3300028794 | Ga0307515_10072720 | Ga0307515_100727204 | 269 |
| 138 | 3300031456 | Ga0307513_10047768 | Ga0307513_100477685 | 269 |
| 139 | 3300031456 | Ga0307513_10205479 | Ga0307513_102054792 | 269 |
| 140 | 3300031548 | Ga0307408_100150697 | Ga0307408_1001506972 | 269 |
| 141 | 3300031649 | Ga0307514_10161570 | Ga0307514_101615702 | 269 |
| 142 | 3300031731 | Ga0307405_10064489 | Ga0307405_100644892 | 269 |
| 143 | 3300031852 | Ga0307410_10006791 | Ga0307410_100067912 | 269 |
| 144 | 3300031901 | Ga0307406_10000481 | Ga0307406_1000048112 | 269 |
| 145 | 3300032004 | Ga0307414_10000008 | Ga0307414_100000089 | 269 |
| 146 | 3300032005 | Ga0307411_10011005 | Ga0307411_100110055 | 269 |
| 147 | 3300046453 | Ga0495627_008361 | Ga0495627_008361_949_1770 | 269 |
| 148 | 3300046492 | Ga0495585_0000879 | Ga0495585_0000879_12795_13625 | 269 |
| 149 | 3300046507 | Ga0495606_0076026 | Ga0495606_0076026_383_1204 | 269 |
| 150 | 3300046524 | Ga0495648_0029863 | Ga0495648_0029863_2243_3073 | 269 |
| 151 | 3300046538 | Ga0495609_0002632 | Ga0495609_0002632_3236_4066 | 269 |
| 152 | 3300046557 | Ga0495622_0025037 | Ga0495622_0025037_1339_2169 | 269 |
| 153 | 3300046616 | Ga0495668_0000044 | Ga0495668_0000044_92593_93423 | 269 |
| 154 | 3300046660 | Ga0495625_0002496 | Ga0495625_0002496_12079_12909 | 269 |
| 155 | 3300046660 | Ga0495625_0017230 | Ga0495625_0017230_1885_2718 | 269 |
| 156 | 3300046683 | Ga0495658_0050173 | Ga0495658_0050173_506_1336 | 269 |
| 157 | 3300046809 | Ga0495600_0087823 | Ga0495600_0087823_463_1293 | 269 |
| 158 | 3300048919 | Ga0496116_0000079 | Ga0496116_0000079_146119_146937 | 269 |
| 159 | 3300048919 | Ga0496116_0000390 | Ga0496116_0000390_17475_18293 | 269 |
| 160 | 3300048924 | Ga0496121_0103390 | Ga0496121_0103390_216_1034 | 269 |
| 161 | 3300048927 | Ga0496124_0012556 | Ga0496124_0012556_1385_2203 | 269 |
| 162 | 3300048928 | Ga0496125_0000567 | Ga0496125_0000567_14754_15572 | 269 |
| 163 | 3300048929 | Ga0496126_0003504 | Ga0496126_0003504_15370_16188 | 269 |
| 164 | 3300049459 | Ga0495678_008361 | Ga0495678_008361_2698_3531 | 269 |
| 165 | 3300049671 | Ga0501238_000421 | Ga0501238_000421_1001_1819 | 269 |
| 166 | 3300050493 | nmdc:mga0k408_177_c3 | nmdc:mga0k408_177_c3_2557_3387 | 269 |
| 167 | 3300053098 | Ga0500650_0114406 | Ga0500650_0114406_80_949 | 269 |
| 168 | 3300053133 | Ga0500655_023658 | Ga0500655_023658_155_982 | 269 |
| 169 | 3300053136 | Ga0500559_0043551 | Ga0500559_0043551_292_1110 | 269 |
| 170 | 3300053139 | Ga0500568_0018952 | Ga0500568_0018952_123_944 | 269 |
| 171 | 3300053156 | Ga0500622_0000009 | Ga0500622_0000009_64203_65030 | 269 |
| 172 | 3300053156 | Ga0500622_0000016 | Ga0500622_0000016_71386_72213 | 269 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3w6v-assembly1.cif.gz_A | crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna | 0.9104 | 172 | 264 |
| 3lsg-assembly2.cif.gz_D | the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 | 0.9091 | 172 | 258 |
| 6swi-assembly1.cif.gz_A | the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus | 0.8954 | 172 | 265 |
| 3lsg-assembly1.cif.gz_A | the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 | 0.8911 | 172 | 265 |
| 3lsg-assembly3.cif.gz_E | the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 | 0.8875 | 172 | 261 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1d5yD02 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.9269 | 220 | 265 | 1.10.10.60 |
| af_P32677_219_275_1.10.10.60 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.9233 | 219 | 265 | 1.10.10.60 |
| 5suwA03 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.9229 | 217 | 264 | 1.10.10.60 |
| 3w6vA00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.9104 | 172 | 264 | 1.10.10.60 |
| af_O69703_224_336_1.10.10.60 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like | 0.9004 | 185 | 265 | 1.10.10.60 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-C6W671-F1-model_v4 | Transcriptional regulator, AraC family | 0.9447 | 172 | 265 |
GO:0003700
GO:0043565 |
| AF-A0A2T7BD47-F1-model_v4 | AraC family transcriptional regulator | 0.909 | 26 | 265 |
GO:0003700
GO:0043565 |
| AF-A0A5B8W524-F1-model_v4 | Helix-turn-helix transcriptional regulator | 0.9083 | 4 | 264 |
GO:0003700
GO:0043565 |
| AF-A0A0N8K724-F1-model_v4 | AraC family transcriptional regulator | 0.9062 | 172 | 264 |
GO:0003700
GO:0043565 |
| AF-A0A1H4A265-F1-model_v4 | AraC-type DNA-binding protein | 0.9014 | 12 | 265 |
GO:0003700
GO:0043565 |
Predicted Structure (AlphaFold2)
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