F261083

General Info

Members Datasets Scaffolds Average Seq Length
172 22 344 125

Family's Representative Sequence

Representative Sequence 3300036647|Ga0316582_0536808|Ga0316582_0536808_63_470
Length 135
Sequence LFNIFKGGIKIMAKRLEVYKCGVCGNIVEVLHAGKGTLVCCGQPMSLFIENTVDAAKEKHVPVIEKIDGGVKVKVGEVAHPMEEKHWIEWVEIIADGKTYRQYLNPGEVPEANFNITADQITAREYCNIHGLWKA

Samples

Sample ID Description Type Environment
1 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
2 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
3 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
4 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
5 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
6 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
7 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
8 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
9 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
10 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
11 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
12 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
13 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
14 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
15 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
16 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
17 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
18 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
19 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
20 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
21 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
22 2523533628 Maridesulfovibrio zosterae DSM 11974 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 28.49
Metatranscriptomes 70.93
Isolates 0.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0.58
Rhizoplane 0
Rhizosphere 96.51
Stem 0
Stem Tuber 0
Unclassified 13.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316582_0536808 3300036647 Bacteria 806
2 Ga0209281_1002946 3300027111 Bacteria 6120
3 Ga0316579_10016291 3300031691 Bacteria 3245
4 Ga0316579_10276134 3300031691 Unclassified 812
5 Ga0316576_10010837 3300031727 Bacteria 5943
6 Ga0316576_10011789 3300031727 Bacteria 5747
7 Ga0316576_10098128 3300031727 Bacteria 2188
8 Ga0316576_10204945 3300031727 Unclassified 1485
9 Ga0316576_10343437 3300031727 Bacteria 1111
10 Ga0316578_10020660 3300031728 Bacteria 3642
11 Ga0316578_10235775 3300031728 Bacteria 1099
12 Ga0316578_10374027 3300031728 Unclassified 846
13 Ga0316577_10003960 3300031733 Bacteria 7574
14 Ga0316577_10821498 3300031733 Bacteria 527
15 Ga0316585_10046658 3300032137 Bacteria 1387
16 Ga0316585_10187198 3300032137 Bacteria 684
17 Ga0316593_10000501 3300032168 Bacteria 7272
18 Ga0316593_10001031 3300032168 Bacteria 5784
19 Ga0316593_10006041 3300032168 Bacteria 3244
20 Ga0316593_10006328 3300032168 Bacteria 3186
21 Ga0316593_10006425 3300032168 Bacteria 3170
22 Ga0316593_10006993 3300032168 Bacteria 3075
23 Ga0316593_10008192 3300032168 Bacteria 2904
24 Ga0316593_10008523 3300032168 Bacteria 2861
25 Ga0316593_10008568 3300032168 Bacteria 2855
26 Ga0316593_10009237 3300032168 Bacteria 2778
27 Ga0316593_10016187 3300032168 Bacteria 2256
28 Ga0316593_10016983 3300032168 Bacteria 2214
29 Ga0316593_10017610 3300032168 Bacteria 2182
30 Ga0316593_10018895 3300032168 Bacteria 2124
31 Ga0316593_10031524 3300032168 Unclassified 1727
32 Ga0316593_10037967 3300032168 Bacteria 1593
33 Ga0316593_10040909 3300032168 Bacteria 1541
34 Ga0316593_10043051 3300032168 Bacteria 1507
35 Ga0316593_10043348 3300032168 Bacteria 1503
36 Ga0316593_10046130 3300032168 Bacteria 1462
37 Ga0316593_10046596 3300032168 Bacteria 1456
38 Ga0316593_10047865 3300032168 Bacteria 1438
39 Ga0316593_10053369 3300032168 Bacteria 1369
40 Ga0316593_10055406 3300032168 Bacteria 1347
41 Ga0316593_10077285 3300032168 Bacteria 1157
42 Ga0316593_10090362 3300032168 Bacteria 1078
43 Ga0316593_10095752 3300032168 Bacteria 1049
44 Ga0316593_10098983 3300032168 Bacteria 1033
45 Ga0316593_10115937 3300032168 Bacteria 959
46 Ga0316593_10118348 3300032168 Bacteria 950
47 Ga0316593_10124004 3300032168 Unclassified 929
48 Ga0316593_10126744 3300032168 Bacteria 919
49 Ga0316593_10133610 3300032168 Unclassified 896
50 Ga0316593_10143559 3300032168 Bacteria 865
51 Ga0316593_10158628 3300032168 Bacteria 825
52 Ga0316593_10162647 3300032168 Unclassified 816
53 Ga0316593_10227541 3300032168 Bacteria 694
54 Ga0316593_10230705 3300032168 Bacteria 689
55 Ga0316593_10274415 3300032168 Bacteria 634
56 Ga0316593_10293435 3300032168 Unclassified 614
57 Ga0316593_10302186 3300032168 Unclassified 606
58 Ga0316593_10305042 3300032168 Bacteria 603
59 Ga0316593_10400638 3300032168 Unclassified 530
60 Ga0316592_1000801 3300033524 Bacteria 4693
61 Ga0316592_1002653 3300033524 Bacteria 3121
62 Ga0316592_1004054 3300033524 Bacteria 2697
63 Ga0316592_1004489 3300033524 Bacteria 2595
64 Ga0316592_1012119 3300033524 Bacteria 1762
65 Ga0316592_1013568 3300033524 Bacteria 1681
66 Ga0316592_1014698 3300033524 Unclassified 1625
67 Ga0316592_1015696 3300033524 Bacteria 1578
68 Ga0316592_1023419 3300033524 Bacteria 1325
69 Ga0316592_1027135 3300033524 Bacteria 1238
70 Ga0316592_1030791 3300033524 Bacteria 1167
71 Ga0316592_1034239 3300033524 Bacteria 1112
72 Ga0316592_1059331 3300033524 Bacteria 858
73 Ga0316592_1072278 3300033524 Bacteria 781
74 Ga0316592_1075216 3300033524 Unclassified 766
75 Ga0316592_1115236 3300033524 Bacteria 622
76 Ga0316592_1124789 3300033524 Bacteria 599
77 Ga0316592_1160226 3300033524 Bacteria 533
78 Ga0316592_1166075 3300033524 Unclassified 524
79 Ga0316586_1002499 3300033527 Bacteria 2297
80 Ga0316586_1006037 3300033527 Bacteria 1728
81 Ga0316586_1008907 3300033527 Bacteria 1495
82 Ga0316586_1019347 3300033527 Bacteria 1112
83 Ga0316586_1032023 3300033527 Bacteria 904
84 Ga0316586_1060377 3300033527 Bacteria 688
85 Ga0316586_1063369 3300033527 Bacteria 674
86 Ga0316588_1002866 3300033528 Bacteria 3065
87 Ga0316588_1005444 3300033528 Bacteria 2481
88 Ga0316588_1006011 3300033528 Bacteria 2404
89 Ga0316588_1007261 3300033528 Bacteria 2245
90 Ga0316588_1012970 3300033528 Unclassified 1802
91 Ga0316588_1013017 3300033528 Bacteria 1799
92 Ga0316588_1013922 3300033528 Bacteria 1753
93 Ga0316588_1023631 3300033528 Bacteria 1412
94 Ga0316588_1026839 3300033528 Bacteria 1335
95 Ga0316588_1031202 3300033528 Bacteria 1250
96 Ga0316588_1032944 3300033528 Bacteria 1221
97 Ga0316588_1037051 3300033528 Bacteria 1159
98 Ga0316588_1047696 3300033528 Bacteria 1035
99 Ga0316588_1070129 3300033528 Bacteria 860
100 Ga0316588_1108799 3300033528 Bacteria 697
101 Ga0316588_1153701 3300033528 Unclassified 591
102 Ga0316587_1002615 3300033529 Bacteria 2426
103 Ga0316587_1006356 3300033529 Bacteria 1802
104 Ga0316587_1006809 3300033529 Bacteria 1758
105 Ga0316587_1007476 3300033529 Bacteria 1698
106 Ga0316587_1007617 3300033529 Bacteria 1685
107 Ga0316587_1013048 3300033529 Bacteria 1357
108 Ga0316587_1013872 3300033529 Bacteria 1325
109 Ga0316587_1017464 3300033529 Bacteria 1202
110 Ga0316587_1017791 3300033529 Bacteria 1193
111 Ga0316587_1019972 3300033529 Bacteria 1136
112 Ga0316587_1024990 3300033529 Unclassified 1036
113 Ga0316587_1035928 3300033529 Unclassified 886
114 Ga0316587_1072979 3300033529 Bacteria 644
115 Ga0316596_1005131 3300033541 Bacteria 2977
116 Ga0316596_1009509 3300033541 Bacteria 2334
117 Ga0316596_1013128 3300033541 Bacteria 2042
118 Ga0316596_1016016 3300033541 Bacteria 1876
119 Ga0316596_1019014 3300033541 Bacteria 1741
120 Ga0316596_1022797 3300033541 Bacteria 1601
121 Ga0316596_1024622 3300033541 Bacteria 1546
122 Ga0316596_1030520 3300033541 Bacteria 1398
123 Ga0316596_1031016 3300033541 Bacteria 1387
124 Ga0316596_1034049 3300033541 Bacteria 1329
125 Ga0316596_1034526 3300033541 Bacteria 1321
126 Ga0316596_1039798 3300033541 Bacteria 1234
127 Ga0316596_1040341 3300033541 Unclassified 1226
128 Ga0316596_1047535 3300033541 Bacteria 1134
129 Ga0316596_1050034 3300033541 Bacteria 1105
130 Ga0316596_1065978 3300033541 Bacteria 968
131 Ga0316596_1067015 3300033541 Unclassified 960
132 Ga0316596_1070547 3300033541 Bacteria 935
133 Ga0316596_1100749 3300033541 Bacteria 781
134 Ga0316596_1118438 3300033541 Bacteria 720
135 Ga0316596_1120639 3300033541 Bacteria 714
136 Ga0316596_1125056 3300033541 Bacteria 701
137 Ga0316596_1144183 3300033541 Bacteria 653
138 Ga0316596_1223639 3300033541 Unclassified 527
139 Ga0316574_0024316 3300035398 Bacteria 3624
140 Ga0316582_0000481 3300036647 Bacteria 14908
141 Ga0316582_0009918 3300036647 Bacteria 5192
142 Ga0316582_0020607 3300036647 Bacteria 3881
143 Ga0316582_0029682 3300036647 Bacteria 3324
144 Ga0316582_0048486 3300036647 Bacteria 2685
145 Ga0316582_0133249 3300036647 Bacteria 1671
146 Ga0316582_0167953 3300036647 Bacteria 1488
147 Ga0316582_0213601 3300036647 Bacteria 1318
148 Ga0316582_0331101 3300036647 Bacteria 1047
149 Ga0316582_0751000 3300036647 Bacteria 669
150 Ga0316582_1222945 3300036647 Unclassified 511
151 Ga0316584_0002301 3300036712 Bacteria 12022
152 Ga0316584_0013064 3300036712 Bacteria 5868
153 Ga0316584_0493991 3300036712 Unclassified 861
154 Ga0316584_0697108 3300036712 Bacteria 696
155 Ga0400483_146896 3300039062 Bacteria 1868
156 Ga0400483_212219 3300039062 Bacteria 1604
157 Ga0400489_09273 3300039093 Bacteria 1128
158 Ga0400489_31499 3300039093 Bacteria 4973
159 Ga0400489_63304 3300039093 Bacteria 1139
160 Ga0451577_0097051 3300042876 Bacteria 2632
161 Ga0451577_0247616 3300042876 Bacteria 1613
162 Ga0451577_0434512 3300042876 Unclassified 1192
163 Ga0451577_0539781 3300042876 Bacteria 1059
164 Ga0453683_0677972 3300044673 Unclassified 675
165 Ga0453684_0000042 3300044712 Bacteria 682980
166 Ga0453684_0002293 3300044712 Bacteria 47018
167 Ga0453684_0149622 3300044712 Bacteria 2776
168 Ga0453684_0220506 3300044712 Bacteria 2197
169 Ga0453684_2576311 3300044712 Bacteria 500
170 Ga0451576_0000124 3300045051 Bacteria 195346
171 Ga0451576_0058625 3300045051 Bacteria 4023
172 2524001929 2523533628 Bacteria 4098242
173 Ga0316582_0536808
174 Ga0209281_1002946
175 Ga0316579_10016291
176 Ga0316579_10276134
177 Ga0316576_10010837
178 Ga0316576_10011789
179 Ga0316576_10098128
180 Ga0316576_10204945
181 Ga0316576_10343437
182 Ga0316578_10020660
183 Ga0316578_10235775
184 Ga0316578_10374027
185 Ga0316577_10003960
186 Ga0316577_10821498
187 Ga0316585_10046658
188 Ga0316585_10187198
189 Ga0316593_10000501
190 Ga0316593_10001031
191 Ga0316593_10006041
192 Ga0316593_10006328
193 Ga0316593_10006425
194 Ga0316593_10006993
195 Ga0316593_10008192
196 Ga0316593_10008523
197 Ga0316593_10008568
198 Ga0316593_10009237
199 Ga0316593_10016187
200 Ga0316593_10016983
201 Ga0316593_10017610
202 Ga0316593_10018895
203 Ga0316593_10031524
204 Ga0316593_10037967
205 Ga0316593_10040909
206 Ga0316593_10043051
207 Ga0316593_10043348
208 Ga0316593_10046130
209 Ga0316593_10046596
210 Ga0316593_10047865
211 Ga0316593_10053369
212 Ga0316593_10055406
213 Ga0316593_10077285
214 Ga0316593_10090362
215 Ga0316593_10095752
216 Ga0316593_10098983
217 Ga0316593_10115937
218 Ga0316593_10118348
219 Ga0316593_10124004
220 Ga0316593_10126744
221 Ga0316593_10133610
222 Ga0316593_10143559
223 Ga0316593_10158628
224 Ga0316593_10162647
225 Ga0316593_10227541
226 Ga0316593_10230705
227 Ga0316593_10274415
228 Ga0316593_10293435
229 Ga0316593_10302186
230 Ga0316593_10305042
231 Ga0316593_10400638
232 Ga0316592_1000801
233 Ga0316592_1002653
234 Ga0316592_1004054
235 Ga0316592_1004489
236 Ga0316592_1012119
237 Ga0316592_1013568
238 Ga0316592_1014698
239 Ga0316592_1015696
240 Ga0316592_1023419
241 Ga0316592_1027135
242 Ga0316592_1030791
243 Ga0316592_1034239
244 Ga0316592_1059331
245 Ga0316592_1072278
246 Ga0316592_1075216
247 Ga0316592_1115236
248 Ga0316592_1124789
249 Ga0316592_1160226
250 Ga0316592_1166075
251 Ga0316586_1002499
252 Ga0316586_1006037
253 Ga0316586_1008907
254 Ga0316586_1019347
255 Ga0316586_1032023
256 Ga0316586_1060377
257 Ga0316586_1063369
258 Ga0316588_1002866
259 Ga0316588_1005444
260 Ga0316588_1006011
261 Ga0316588_1007261
262 Ga0316588_1012970
263 Ga0316588_1013017
264 Ga0316588_1013922
265 Ga0316588_1023631
266 Ga0316588_1026839
267 Ga0316588_1031202
268 Ga0316588_1032944
269 Ga0316588_1037051
270 Ga0316588_1047696
271 Ga0316588_1070129
272 Ga0316588_1108799
273 Ga0316588_1153701
274 Ga0316587_1002615
275 Ga0316587_1006356
276 Ga0316587_1006809
277 Ga0316587_1007476
278 Ga0316587_1007617
279 Ga0316587_1013048
280 Ga0316587_1013872
281 Ga0316587_1017464
282 Ga0316587_1017791
283 Ga0316587_1019972
284 Ga0316587_1024990
285 Ga0316587_1035928
286 Ga0316587_1072979
287 Ga0316596_1005131
288 Ga0316596_1009509
289 Ga0316596_1013128
290 Ga0316596_1016016
291 Ga0316596_1019014
292 Ga0316596_1022797
293 Ga0316596_1024622
294 Ga0316596_1030520
295 Ga0316596_1031016
296 Ga0316596_1034049
297 Ga0316596_1034526
298 Ga0316596_1039798
299 Ga0316596_1040341
300 Ga0316596_1047535
301 Ga0316596_1050034
302 Ga0316596_1065978
303 Ga0316596_1067015
304 Ga0316596_1070547
305 Ga0316596_1100749
306 Ga0316596_1118438
307 Ga0316596_1120639
308 Ga0316596_1125056
309 Ga0316596_1144183
310 Ga0316596_1223639
311 Ga0316574_0024316
312 Ga0316582_0000481
313 Ga0316582_0009918
314 Ga0316582_0020607
315 Ga0316582_0029682
316 Ga0316582_0048486
317 Ga0316582_0133249
318 Ga0316582_0167953
319 Ga0316582_0213601
320 Ga0316582_0331101
321 Ga0316582_0751000
322 Ga0316582_1222945
323 Ga0316584_0002301
324 Ga0316584_0013064
325 Ga0316584_0493991
326 Ga0316584_0697108
327 Ga0400483_146896
328 Ga0400483_212219
329 Ga0400489_09273
330 Ga0400489_31499
331 Ga0400489_63304
332 Ga0451577_0097051
333 Ga0451577_0247616
334 Ga0451577_0434512
335 Ga0451577_0539781
336 Ga0453683_0677972
337 Ga0453684_0000042
338 Ga0453684_0002293
339 Ga0453684_0149622
340 Ga0453684_0220506
341 Ga0453684_2576311
342 Ga0451576_0000124
343 Ga0451576_0058625
344 2524001929

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06397

Desulfoferrod_N

Desulfoferrodoxin, N-terminal domain

13

48

0.95

PF01880

Desulfoferrodox

Desulfoferrodoxin

52

135

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
1dcd-assembly1.cif.gz_A desulforedoxin complexed with cd2+ 1.01 2 37
1dhg-assembly1.cif.gz_A hg-substituted desulforedoxin 1.007 2 37
1cfw-assembly1.cif.gz_A ga-substituted desulforedoxin 1.006 2 37
1dxg-assembly1.cif.gz_B crystal structure of desulforedoxin from desulfovibrio gigas at 1.8 a resolution 1.005 4 37
1dcd-assembly1.cif.gz_B desulforedoxin complexed with cd2+ 1.001 2 37
ID Description Score Start End Superfamily
2ji2C01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9885 1 39 2.20.28.100
1vzgB01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9833 2 39 2.20.28.100
2ji3C01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9807 1 39 2.20.28.100
1vzhA01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9727 2 39 2.20.28.100
2ji2C01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9645 1 39 2.20.28.100
ID Description Score Start End GO Terms
AF-A0A843KJ52-F1-model_v4 Desulfoferrodoxin FeS4 iron-binding domain-containing protein 1.013 2 36 GO:0005506
AF-A0A846NPI0-F1-model_v4 Desulfoferrodoxin FeS4 iron-binding domain-containing protein 1.011 2 36 GO:0005506
AF-A0A2M7W9A4-F1-model_v4 Desulfoferrodoxin N-terminal domain-containing protein 1.01 2 38 GO:0005506
AF-A0A2U0S0M0-F1-model_v4 Desulfoferrodoxin N-terminal domain-containing protein 1.008 1 36 GO:0005506
AF-A0A7V2XXT6-F1-model_v4 Desulfoferrodoxin FeS4 iron-binding domain-containing protein 1.007 1 36 GO:0005506

Map