F261006
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 172 | 107 | 344 | 382 |
Family's Representative Sequence
| Representative Sequence | 3300031665|Ga0316575_10003731|Ga0316575_100037317 |
| Length | 424 |
| Sequence | MIKARSSKLVSSAIPASLRSIMEPNEKFQYIDSEEDLRRVCGELADAKVLYLDTEFHREKTYYPNFALLQIADREHCYLIDPLAISDLKPVWELLLSPHAVKVFHAARQDLEIIVREAGALPLPLFDTQIAAALLGYGQQVGFGNLVQRLAKTSLPKLESFSDWLSRPLARQQLVYAADDVIYLRPVYQALLQELEASGRLDWVQEEMATLCDPTTYDNDCRDIFWRVKGVTRLKGQQLAVLRELACWREREAKRLDIPRKRVISDELLVELARRPHLSLDDMARMRGLNSGLIQRFGQALISAWQKGHDCPKAEWPHTARRERPSDGTDVRLELLDALMRLRADEERISPHLLASKDELSLLASWAGHRSNAEPDIPCLHGWRRTLIGDDLLRMSRGELCMRLDTRTGRPKIERIHPDSTPKT |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 2 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 3 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 6 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 7 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 10 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 12 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 13 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 14 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 15 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 16 | 3300006042 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 | Metagenome | Endosphere |
| 17 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 18 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 19 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 20 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 21 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 22 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 23 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 25 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 29 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 30 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 31 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 40 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 42 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 43 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 44 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 45 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 46 | 3300032133 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA | Metagenome | Rhizosphere |
| 47 | 3300032137 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC | Metagenome | Rhizosphere |
| 48 | 3300034816 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 | Metagenome | Rhizosphere |
| 49 | 3300035085 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 | Metagenome | Rhizosphere |
| 50 | 3300035112 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 | Metagenome | Rhizosphere |
| 51 | 3300035241 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 | Metagenome | Rhizosphere |
| 52 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 53 | 3300035691 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 | Metagenome | Rhizosphere |
| 54 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 55 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 56 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 57 | 3300041494 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG | Metagenome | Unclassified |
| 58 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 59 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 60 | 3300046461 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere | Metagenome | Rhizosphere |
| 61 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 62 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 63 | 3300046692 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere | Metagenome | Rhizosphere |
| 64 | 3300046694 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere | Metagenome | Rhizosphere |
| 65 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 66 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 67 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 68 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 69 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 70 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 71 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 72 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 73 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 74 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 75 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 76 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 77 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 78 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 79 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 80 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 81 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 82 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 83 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 84 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 85 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 86 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 87 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 88 | 3300049593 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 | Metagenome | Rhizosphere |
| 89 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 90 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 91 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 92 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 93 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 94 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 95 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 96 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 97 | 3300053094 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere | Metagenome | Endosphere |
| 98 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 99 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 100 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 101 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 102 | 2554235132 | Pseudomonas aeruginosa PGPR2 | Isolate | Unclassified |
| 103 | 2606217733 | Pseudomonas aeruginosa NFHH01 | Isolate | Rhizoplane |
| 104 | 2738543020 | Pseudomonas sp. GV054 | Isolate | Unclassified |
| 105 | 2738543021 | Pseudomonas sp. GV071 | Isolate | Unclassified |
| 106 | 2842805378 | Pseudomonas sp. R-72599 | Isolate | Unclassified |
| 107 | 8011350971 | Pseudomonas sp. 30_B | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 96.51 |
| Metatranscriptomes | 0 |
| Isolates | 3.49 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 11.05 |
| Nodule | 0 |
| Rhizoplane | 2.33 |
| Rhizosphere | 82.56 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 4.07 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0316575_10003731 | 3300031665 | Bacteria | 5289 |
| 2 | Ga0070670_100031241 | 3300005331 | Bacteria | 4586 |
| 3 | Ga0070671_100037270 | 3300005355 | Bacteria | 4032 |
| 4 | Ga0070705_100058819 | 3300005440 | Unclassified | 2273 |
| 5 | Ga0070681_10213072 | 3300005458 | Bacteria | 1848 |
| 6 | Ga0070706_100068539 | 3300005467 | Bacteria | 3281 |
| 7 | Ga0070706_100246557 | 3300005467 | Bacteria | 1668 |
| 8 | Ga0070699_100100460 | 3300005518 | Bacteria | 2536 |
| 9 | Ga0070665_100194859 | 3300005548 | Bacteria | 2027 |
| 10 | Ga0068856_100167472 | 3300005614 | Bacteria | 2209 |
| 11 | Ga0070702_100079756 | 3300005615 | Bacteria | 1957 |
| 12 | Ga0068859_100159137 | 3300005617 | Bacteria | 2337 |
| 13 | Ga0068863_100030263 | 3300005841 | Bacteria | 5170 |
| 14 | Ga0068858_100039157 | 3300005842 | Bacteria | 4396 |
| 15 | Ga0068858_100164078 | 3300005842 | Bacteria | 2093 |
| 16 | Ga0068858_100254418 | 3300005842 | Bacteria | 1669 |
| 17 | Ga0068862_100044524 | 3300005844 | Bacteria | 3786 |
| 18 | Ga0068862_100132766 | 3300005844 | Bacteria | 2204 |
| 19 | Ga0075365_10000268 | 3300006038 | Bacteria | 17934 |
| 20 | Ga0075365_10024383 | 3300006038 | Bacteria | 3815 |
| 21 | Ga0075365_10065283 | 3300006038 | Bacteria | 2439 |
| 22 | Ga0075368_10037322 | 3300006042 | Bacteria | 1900 |
| 23 | Ga0075364_10002467 | 3300006051 | Bacteria | 10362 |
| 24 | Ga0075364_10044864 | 3300006051 | Bacteria | 2876 |
| 25 | Ga0075364_10060701 | 3300006051 | Bacteria | 2479 |
| 26 | Ga0075367_10030972 | 3300006178 | Bacteria | 3070 |
| 27 | Ga0075367_10039948 | 3300006178 | Bacteria | 2738 |
| 28 | Ga0075367_10096970 | 3300006178 | Bacteria | 1798 |
| 29 | Ga0075428_100000110 | 3300006844 | Bacteria | 69621 |
| 30 | Ga0075428_100021908 | 3300006844 | Bacteria | 7076 |
| 31 | Ga0075430_100100474 | 3300006846 | Bacteria | 2416 |
| 32 | Ga0097620_100159131 | 3300006931 | Bacteria | 2337 |
| 33 | Ga0111539_10006690 | 3300009094 | Bacteria | 14842 |
| 34 | Ga0105243_10223861 | 3300009148 | Bacteria | 1665 |
| 35 | Ga0105249_10086856 | 3300009553 | Unclassified | 2917 |
| 36 | Ga0105249_10426201 | 3300009553 | Bacteria | 1361 |
| 37 | Ga0157370_10001630 | 3300013104 | Bacteria | 27714 |
| 38 | Ga0163163_10016702 | 3300014325 | Bacteria | 6827 |
| 39 | Ga0163163_10185211 | 3300014325 | Bacteria | 2130 |
| 40 | Ga0157379_10027885 | 3300014968 | Bacteria | 5026 |
| 41 | Ga0182006_1016857 | 3300015261 | Bacteria | 3113 |
| 42 | Ga0213876_10027027 | 3300021384 | Bacteria | 3028 |
| 43 | Ga0209233_1004328 | 3300025261 | Bacteria | 4848 |
| 44 | Ga0207706_10145838 | 3300025933 | Bacteria | 2082 |
| 45 | Ga0207712_10016471 | 3300025961 | Bacteria | 4788 |
| 46 | Ga0207658_10270723 | 3300025986 | Unclassified | 1452 |
| 47 | Ga0207703_10110639 | 3300026035 | Bacteria | 2344 |
| 48 | Ga0207703_10196083 | 3300026035 | Bacteria | 1792 |
| 49 | Ga0207703_10226677 | 3300026035 | Bacteria | 1673 |
| 50 | Ga0207641_10051587 | 3300026088 | Bacteria | 3484 |
| 51 | Ga0207648_10101489 | 3300026089 | Bacteria | 2521 |
| 52 | Ga0207675_100112773 | 3300026118 | Bacteria | 2567 |
| 53 | Ga0207683_10100854 | 3300026121 | Bacteria | 2577 |
| 54 | Ga0207428_10039320 | 3300027907 | Bacteria | 3841 |
| 55 | Ga0268264_10163295 | 3300028381 | Bacteria | 2009 |
| 56 | Ga0316575_10009025 | 3300031665 | Bacteria | 3645 |
| 57 | Ga0316576_10006564 | 3300031727 | Bacteria | 7256 |
| 58 | Ga0316576_10007388 | 3300031727 | Bacteria | 6918 |
| 59 | Ga0316576_10031989 | 3300031727 | Bacteria | 3738 |
| 60 | Ga0316576_10072787 | 3300031727 | Bacteria | 2538 |
| 61 | Ga0316576_10075629 | 3300031727 | Bacteria | 2491 |
| 62 | Ga0316576_10142271 | 3300031727 | Bacteria | 1806 |
| 63 | Ga0316578_10000507 | 3300031728 | Bacteria | 13197 |
| 64 | Ga0316578_10002130 | 3300031728 | Bacteria | 8510 |
| 65 | Ga0316578_10006074 | 3300031728 | Bacteria | 5922 |
| 66 | Ga0316578_10018844 | 3300031728 | Bacteria | 3790 |
| 67 | Ga0316578_10031501 | 3300031728 | Bacteria | 3022 |
| 68 | Ga0316578_10034623 | 3300031728 | Bacteria | 2900 |
| 69 | Ga0316577_10047314 | 3300031733 | Bacteria | 2402 |
| 70 | Ga0307409_100040434 | 3300031995 | Bacteria | 3472 |
| 71 | Ga0307415_100043221 | 3300032126 | Bacteria | 3005 |
| 72 | Ga0316583_10028495 | 3300032133 | Bacteria | 1991 |
| 73 | Ga0316585_10004052 | 3300032137 | Bacteria | 4062 |
| 74 | Ga0373930_0002398 | 3300034816 | Bacteria | 2895 |
| 75 | Ga0373929_0001291 | 3300035085 | Bacteria | 4839 |
| 76 | Ga0373932_0000777 | 3300035112 | Bacteria | 9468 |
| 77 | Ga0373961_0040028 | 3300035241 | Bacteria | 1349 |
| 78 | Ga0316574_0010196 | 3300035398 | Bacteria | 5297 |
| 79 | Ga0316574_0027596 | 3300035398 | Bacteria | 3420 |
| 80 | Ga0316574_0084524 | 3300035398 | Unclassified | 2019 |
| 81 | Ga0316574_0120299 | 3300035398 | Bacteria | 1686 |
| 82 | Ga0316574_0224577 | 3300035398 | Bacteria | 1203 |
| 83 | Ga0373931_0000005 | 3300035691 | Bacteria | 480485 |
| 84 | Ga0373931_0000775 | 3300035691 | Bacteria | 13364 |
| 85 | Ga0316582_0005146 | 3300036647 | Bacteria | 6691 |
| 86 | Ga0316582_0014048 | 3300036647 | Bacteria | 4532 |
| 87 | Ga0316582_0067292 | 3300036647 | Bacteria | 2311 |
| 88 | Ga0316584_0000580 | 3300036712 | Bacteria | 19752 |
| 89 | Ga0316584_0006473 | 3300036712 | Bacteria | 7930 |
| 90 | Ga0316584_0011274 | 3300036712 | Bacteria | 6276 |
| 91 | Ga0316584_0050574 | 3300036712 | Bacteria | 3107 |
| 92 | Ga0400483_023727 | 3300039062 | Unclassified | 2476 |
| 93 | Ga0451837_0818248 | 3300041494 | Bacteria | 4424 |
| 94 | Ga0451577_0002485 | 3300042876 | Bacteria | 21912 |
| 95 | Ga0453684_0166509 | 3300044712 | Bacteria | 2601 |
| 96 | Ga0495641_0004660 | 3300046461 | Bacteria | 9582 |
| 97 | Ga0495606_0001514 | 3300046507 | Bacteria | 30819 |
| 98 | Ga0495643_0000560 | 3300046522 | Bacteria | 45977 |
| 99 | Ga0495671_0001241 | 3300046692 | Bacteria | 17430 |
| 100 | Ga0495649_0000576 | 3300046694 | Bacteria | 30824 |
| 101 | Ga0495672_0009286 | 3300047320 | Bacteria | 7147 |
| 102 | Ga0496104_0032907 | 3300048907 | Bacteria | 4827 |
| 103 | Ga0496114_0020284 | 3300048917 | Bacteria | 5393 |
| 104 | Ga0496114_0062985 | 3300048917 | Bacteria | 3105 |
| 105 | Ga0501032_0024899 | 3300049569 | Bacteria | 4129 |
| 106 | Ga0501033_0013765 | 3300049570 | Bacteria | 6153 |
| 107 | Ga0501034_0013572 | 3300049571 | Bacteria | 8385 |
| 108 | Ga0501034_0041004 | 3300049571 | Bacteria | 4684 |
| 109 | Ga0501034_0078058 | 3300049571 | Bacteria | 3316 |
| 110 | Ga0501036_0016168 | 3300049572 | Bacteria | 6233 |
| 111 | Ga0501036_0248093 | 3300049572 | Bacteria | 1492 |
| 112 | Ga0501037_0014413 | 3300049573 | Bacteria | 5819 |
| 113 | Ga0501038_0065398 | 3300049574 | Bacteria | 3098 |
| 114 | Ga0501038_0072238 | 3300049574 | Bacteria | 2924 |
| 115 | Ga0501039_0005355 | 3300049575 | Bacteria | 9707 |
| 116 | Ga0501039_0022969 | 3300049575 | Bacteria | 4784 |
| 117 | Ga0501039_0027749 | 3300049575 | Bacteria | 4354 |
| 118 | Ga0501039_0057465 | 3300049575 | Bacteria | 3013 |
| 119 | Ga0501039_0214907 | 3300049575 | Bacteria | 1512 |
| 120 | Ga0501040_0002098 | 3300049576 | Bacteria | 12847 |
| 121 | Ga0501041_0046469 | 3300049577 | Bacteria | 2641 |
| 122 | Ga0501041_0075523 | 3300049577 | Bacteria | 2072 |
| 123 | Ga0501041_0095645 | 3300049577 | Bacteria | 1836 |
| 124 | Ga0501042_0007774 | 3300049578 | Bacteria | 7046 |
| 125 | Ga0501042_0039223 | 3300049578 | Bacteria | 3365 |
| 126 | Ga0501046_0031313 | 3300049580 | Bacteria | 4313 |
| 127 | Ga0501047_0259463 | 3300049581 | Bacteria | 1586 |
| 128 | Ga0501047_0268876 | 3300049581 | Unclassified | 1551 |
| 129 | Ga0501048_0006920 | 3300049582 | Bacteria | 8620 |
| 130 | Ga0501048_0068221 | 3300049582 | Bacteria | 2513 |
| 131 | Ga0501068_0093041 | 3300049584 | Bacteria | 1862 |
| 132 | Ga0501069_0036833 | 3300049585 | Bacteria | 2699 |
| 133 | Ga0501070_0014724 | 3300049586 | Bacteria | 6581 |
| 134 | Ga0501071_0083491 | 3300049587 | Bacteria | 2340 |
| 135 | Ga0501071_0096561 | 3300049587 | Bacteria | 2175 |
| 136 | Ga0501072_0001981 | 3300049588 | Bacteria | 15253 |
| 137 | Ga0501072_0005115 | 3300049588 | Bacteria | 9973 |
| 138 | Ga0501075_0002837 | 3300049591 | Bacteria | 11621 |
| 139 | Ga0501075_0050678 | 3300049591 | Bacteria | 3121 |
| 140 | Ga0501075_0127107 | 3300049591 | Bacteria | 1941 |
| 141 | Ga0501075_0146856 | 3300049591 | Bacteria | 1797 |
| 142 | Ga0501076_0011329 | 3300049592 | Bacteria | 6639 |
| 143 | Ga0501076_0088410 | 3300049592 | Bacteria | 2490 |
| 144 | Ga0501077_0006851 | 3300049593 | Bacteria | 7011 |
| 145 | Ga0501079_0013830 | 3300049741 | Bacteria | 6155 |
| 146 | Ga0501081_0029390 | 3300049743 | Bacteria | 3714 |
| 147 | Ga0501035_0042172 | 3300049822 | Bacteria | 4117 |
| 148 | Ga0501035_0042698 | 3300049822 | Bacteria | 4089 |
| 149 | Ga0501044_0000319 | 3300049823 | Bacteria | 60713 |
| 150 | Ga0501045_0001770 | 3300049824 | Bacteria | 14584 |
| 151 | Ga0501045_0024263 | 3300049824 | Unclassified | 4353 |
| 152 | Ga0501045_0041672 | 3300049824 | Bacteria | 3341 |
| 153 | Ga0501045_0055195 | 3300049824 | Bacteria | 2905 |
| 154 | nmdc:mga00v17_40725_c1 | 3300050491 | Bacteria | 2788 |
| 155 | nmdc:mga0yw44_13035_c1 | 3300050492 | Bacteria | 4358 |
| 156 | nmdc:mga0yw44_21096_c1 | 3300050492 | Bacteria | 3628 |
| 157 | nmdc:mga0yw44_78_c2 | 3300050492 | Bacteria | 19124 |
| 158 | nmdc:mga0yw44_84868_c1 | 3300050492 | Bacteria | 1991 |
| 159 | nmdc:mga08y16_17522_c1 | 3300050511 | Bacteria | 7543 |
| 160 | Ga0500566_0000183 | 3300053094 | Bacteria | 32338 |
| 161 | Ga0500568_0000067 | 3300053139 | Bacteria | 104480 |
| 162 | Ga0500616_0000418 | 3300053153 | Bacteria | 57046 |
| 163 | Ga0501084_0019319 | 3300054114 | Bacteria | 5677 |
| 164 | Ga0501084_0034179 | 3300054114 | Bacteria | 4251 |
| 165 | Ga0501082_0046074 | 3300060353 | Bacteria | 3760 |
| 166 | Ga0501082_0052572 | 3300060353 | Bacteria | 3512 |
| 167 | 2554816435 | 2554235132 | Bacteria | 6772433 |
| 168 | 2608382647 | 2606217733 | Bacteria | 6360972 |
| 169 | 2739290038 | 2738543020 | Bacteria | 5718238 |
| 170 | 2739295350 | 2738543021 | Bacteria | 5718241 |
| 171 | 2842810106 | 2842805378 | Bacteria | 5385175 |
| 172 | 8011356748 | 8011350971 | Bacteria | 6158957 |
| 173 | Ga0316575_10003731 | |||
| 174 | Ga0070670_100031241 | |||
| 175 | Ga0070671_100037270 | |||
| 176 | Ga0070705_100058819 | |||
| 177 | Ga0070681_10213072 | |||
| 178 | Ga0070706_100068539 | |||
| 179 | Ga0070706_100246557 | |||
| 180 | Ga0070699_100100460 | |||
| 181 | Ga0070665_100194859 | |||
| 182 | Ga0068856_100167472 | |||
| 183 | Ga0070702_100079756 | |||
| 184 | Ga0068859_100159137 | |||
| 185 | Ga0068863_100030263 | |||
| 186 | Ga0068858_100039157 | |||
| 187 | Ga0068858_100164078 | |||
| 188 | Ga0068858_100254418 | |||
| 189 | Ga0068862_100044524 | |||
| 190 | Ga0068862_100132766 | |||
| 191 | Ga0075365_10000268 | |||
| 192 | Ga0075365_10024383 | |||
| 193 | Ga0075365_10065283 | |||
| 194 | Ga0075368_10037322 | |||
| 195 | Ga0075364_10002467 | |||
| 196 | Ga0075364_10044864 | |||
| 197 | Ga0075364_10060701 | |||
| 198 | Ga0075367_10030972 | |||
| 199 | Ga0075367_10039948 | |||
| 200 | Ga0075367_10096970 | |||
| 201 | Ga0075428_100000110 | |||
| 202 | Ga0075428_100021908 | |||
| 203 | Ga0075430_100100474 | |||
| 204 | Ga0097620_100159131 | |||
| 205 | Ga0111539_10006690 | |||
| 206 | Ga0105243_10223861 | |||
| 207 | Ga0105249_10086856 | |||
| 208 | Ga0105249_10426201 | |||
| 209 | Ga0157370_10001630 | |||
| 210 | Ga0163163_10016702 | |||
| 211 | Ga0163163_10185211 | |||
| 212 | Ga0157379_10027885 | |||
| 213 | Ga0182006_1016857 | |||
| 214 | Ga0213876_10027027 | |||
| 215 | Ga0209233_1004328 | |||
| 216 | Ga0207706_10145838 | |||
| 217 | Ga0207712_10016471 | |||
| 218 | Ga0207658_10270723 | |||
| 219 | Ga0207703_10110639 | |||
| 220 | Ga0207703_10196083 | |||
| 221 | Ga0207703_10226677 | |||
| 222 | Ga0207641_10051587 | |||
| 223 | Ga0207648_10101489 | |||
| 224 | Ga0207675_100112773 | |||
| 225 | Ga0207683_10100854 | |||
| 226 | Ga0207428_10039320 | |||
| 227 | Ga0268264_10163295 | |||
| 228 | Ga0316575_10009025 | |||
| 229 | Ga0316576_10006564 | |||
| 230 | Ga0316576_10007388 | |||
| 231 | Ga0316576_10031989 | |||
| 232 | Ga0316576_10072787 | |||
| 233 | Ga0316576_10075629 | |||
| 234 | Ga0316576_10142271 | |||
| 235 | Ga0316578_10000507 | |||
| 236 | Ga0316578_10002130 | |||
| 237 | Ga0316578_10006074 | |||
| 238 | Ga0316578_10018844 | |||
| 239 | Ga0316578_10031501 | |||
| 240 | Ga0316578_10034623 | |||
| 241 | Ga0316577_10047314 | |||
| 242 | Ga0307409_100040434 | |||
| 243 | Ga0307415_100043221 | |||
| 244 | Ga0316583_10028495 | |||
| 245 | Ga0316585_10004052 | |||
| 246 | Ga0373930_0002398 | |||
| 247 | Ga0373929_0001291 | |||
| 248 | Ga0373932_0000777 | |||
| 249 | Ga0373961_0040028 | |||
| 250 | Ga0316574_0010196 | |||
| 251 | Ga0316574_0027596 | |||
| 252 | Ga0316574_0084524 | |||
| 253 | Ga0316574_0120299 | |||
| 254 | Ga0316574_0224577 | |||
| 255 | Ga0373931_0000005 | |||
| 256 | Ga0373931_0000775 | |||
| 257 | Ga0316582_0005146 | |||
| 258 | Ga0316582_0014048 | |||
| 259 | Ga0316582_0067292 | |||
| 260 | Ga0316584_0000580 | |||
| 261 | Ga0316584_0006473 | |||
| 262 | Ga0316584_0011274 | |||
| 263 | Ga0316584_0050574 | |||
| 264 | Ga0400483_023727 | |||
| 265 | Ga0451837_0818248 | |||
| 266 | Ga0451577_0002485 | |||
| 267 | Ga0453684_0166509 | |||
| 268 | Ga0495641_0004660 | |||
| 269 | Ga0495606_0001514 | |||
| 270 | Ga0495643_0000560 | |||
| 271 | Ga0495671_0001241 | |||
| 272 | Ga0495649_0000576 | |||
| 273 | Ga0495672_0009286 | |||
| 274 | Ga0496104_0032907 | |||
| 275 | Ga0496114_0020284 | |||
| 276 | Ga0496114_0062985 | |||
| 277 | Ga0501032_0024899 | |||
| 278 | Ga0501033_0013765 | |||
| 279 | Ga0501034_0013572 | |||
| 280 | Ga0501034_0041004 | |||
| 281 | Ga0501034_0078058 | |||
| 282 | Ga0501036_0016168 | |||
| 283 | Ga0501036_0248093 | |||
| 284 | Ga0501037_0014413 | |||
| 285 | Ga0501038_0065398 | |||
| 286 | Ga0501038_0072238 | |||
| 287 | Ga0501039_0005355 | |||
| 288 | Ga0501039_0022969 | |||
| 289 | Ga0501039_0027749 | |||
| 290 | Ga0501039_0057465 | |||
| 291 | Ga0501039_0214907 | |||
| 292 | Ga0501040_0002098 | |||
| 293 | Ga0501041_0046469 | |||
| 294 | Ga0501041_0075523 | |||
| 295 | Ga0501041_0095645 | |||
| 296 | Ga0501042_0007774 | |||
| 297 | Ga0501042_0039223 | |||
| 298 | Ga0501046_0031313 | |||
| 299 | Ga0501047_0259463 | |||
| 300 | Ga0501047_0268876 | |||
| 301 | Ga0501048_0006920 | |||
| 302 | Ga0501048_0068221 | |||
| 303 | Ga0501068_0093041 | |||
| 304 | Ga0501069_0036833 | |||
| 305 | Ga0501070_0014724 | |||
| 306 | Ga0501071_0083491 | |||
| 307 | Ga0501071_0096561 | |||
| 308 | Ga0501072_0001981 | |||
| 309 | Ga0501072_0005115 | |||
| 310 | Ga0501075_0002837 | |||
| 311 | Ga0501075_0050678 | |||
| 312 | Ga0501075_0127107 | |||
| 313 | Ga0501075_0146856 | |||
| 314 | Ga0501076_0011329 | |||
| 315 | Ga0501076_0088410 | |||
| 316 | Ga0501077_0006851 | |||
| 317 | Ga0501079_0013830 | |||
| 318 | Ga0501081_0029390 | |||
| 319 | Ga0501035_0042172 | |||
| 320 | Ga0501035_0042698 | |||
| 321 | Ga0501044_0000319 | |||
| 322 | Ga0501045_0001770 | |||
| 323 | Ga0501045_0024263 | |||
| 324 | Ga0501045_0041672 | |||
| 325 | Ga0501045_0055195 | |||
| 326 | nmdc:mga00v17_40725_c1 | |||
| 327 | nmdc:mga0yw44_13035_c1 | |||
| 328 | nmdc:mga0yw44_21096_c1 | |||
| 329 | nmdc:mga0yw44_78_c2 | |||
| 330 | nmdc:mga0yw44_84868_c1 | |||
| 331 | nmdc:mga08y16_17522_c1 | |||
| 332 | Ga0500566_0000183 | |||
| 333 | Ga0500568_0000067 | |||
| 334 | Ga0500616_0000418 | |||
| 335 | Ga0501084_0019319 | |||
| 336 | Ga0501084_0034179 | |||
| 337 | Ga0501082_0046074 | |||
| 338 | Ga0501082_0052572 | |||
| 339 | 2554816435 | |||
| 340 | 2608382647 | |||
| 341 | 2739290038 | |||
| 342 | 2739295350 | |||
| 343 | 2842810106 | |||
| 344 | 8011356748 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2rhf-assembly1.cif.gz_A | d. radiodurans recq hrdc domain 3 | 0.9566 | 209 | 278 |
| 7mpr-assembly1.cif.gz_A | brucella melitensis nrnc | 0.9012 | 19 | 175 |
| 7mpm-assembly1.cif.gz_A | bartonella henselae nrnc bound to paa | 0.8991 | 19 | 182 |
| 5c0x-assembly1.cif.gz_K | structure of a 12-subunit nuclear exosome complex bound to structured rna | 0.8981 | 2 | 185 |
| 7mqd-assembly1.cif.gz_A | bartonella henselae nrnc complexed with pagg. d4 symmetry. | 0.8925 | 19 | 182 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 2rhfA00 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain | 0.9551 | 209 | 278 | 1.10.150.80 |
| 1yt3A01 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.9345 | 1 | 191 | 3.30.420.10 |
| 1yt3A02 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain | 0.9313 | 191 | 290 | 1.10.150.80 |
| af_G5EBX6_179_483_3.30.420.10 | Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H | 0.9257 | 1 | 183 | 3.30.420.10 |
| 1yt3A02 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain | 0.9225 | 191 | 290 | 1.10.150.80 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7V3VXU8-F1-model_v4 | Ribonuclease D | 0.9745 | 2 | 167 |
GO:0003676
GO:0006139 GO:0008408 |
| AF-A0A3D1WTS6-F1-model_v4 | Ribonuclease D | 0.9704 | 2 | 254 |
GO:0000166
GO:0003676 GO:0005737 GO:0008033 GO:0008408 GO:0033890 |
| AF-A0A7Z9LZS4-F1-model_v4 | Ribonuclease D | 0.963 | 2 | 144 |
GO:0003676
GO:0006139 GO:0008408 |
| AF-A0A534FI36-F1-model_v4 | Ribonuclease D | 0.9626 | 2 | 196 |
GO:0003676
GO:0006139 GO:0008408 |
| AF-A0A2N3G9Z5-F1-model_v4 | Ribonuclease D | 0.9618 | 2 | 248 |
GO:0000166
GO:0003676 GO:0005737 GO:0008033 GO:0008408 GO:0033890 |