F260970

General Info

Members Datasets Scaffolds Average Seq Length
172 127 147 516

Family's Representative Sequence

Representative Sequence 3300030731|Ga0316177_1126724|Ga0316177_11267242
Length 541
Sequence MNIMKNKTRIFYKKALIASACILMAFSACDKGFEEMNTNPNAFTEPVLGNLFTTSIIRTAGTGTADRNRTNIKYFAGTMQYMASLGLNWSGDKNYENNQFGDLFETIYNVHLKELQQIIAATEGNVDLINQFATANIWRVFILHRATDIYGDVPYTEAGAGYITGTFKPKYDKQSTIYSMMLEQLETSIKQLDATKSTFGSNDVLYQGNIPKWKTFAYSLMLRLGMRLSNVSPDLAKNWVEKAIAGGVMQSNEDIAKVNHVAGNGNTQNWDSFELKRESFPESNAGKGPVKLSKTLIDALIERNDPRLPFYATLWEGNILSQQQAKLPTTTAPTIQQGLPNGFDATTIKQVIPNFSNNMLAALSEPNTGTVASLNAPTIILSYSEVEFLLAEAALRGWGPGTPSEHYNNAIRANMQSTSLFPVVTLSSGESIMKEELIESYLIAHALNSSASFEQQMEQIYTQFWLAHFMYFDNFEAFSTWRRTGYPILNAPNFPGNFTGGKHLLRLRYPVSEATLNKANYEEAVSNQGPDLYTTAVWWDK

Samples

Sample ID Description Type Environment
1 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
2 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
3 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
4 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
5 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
6 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
7 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
8 2739367656 Pedobacter sp. CF523 Isolate Unclassified
9 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
10 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
11 2818991437 Pedobacter terrae 518 Isolate Unclassified
12 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
13 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
14 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
15 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
16 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
17 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
18 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
19 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
20 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
21 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
22 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
23 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
24 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
25 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
26 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
27 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
28 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
29 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
32 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
33 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
34 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
49 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
56 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
57 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
60 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
84 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
85 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
86 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
87 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
88 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
89 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
90 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
94 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
95 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
96 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
97 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
98 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
99 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
100 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
101 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
102 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
103 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
104 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
105 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
106 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
107 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
108 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
109 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
110 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
112 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
113 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
114 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
115 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
116 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
117 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
118 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
119 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
120 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
121 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
122 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
123 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
124 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
125 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
126 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
127 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.88
Metatranscriptomes 0.58
Isolates 14.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.63
Nodule 0
Rhizoplane 0
Rhizosphere 70.93
Stem 0
Stem Tuber 0
Unclassified 17.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10037346 3300003316 Bacteria 9326
2 rootL2_10011654 3300003322 Bacteria 20378
3 rootL2_10082820 3300003322 Bacteria 4797
4 rootL2_10101907 3300003322 Unclassified 2289
5 rootH1_10109696 3300003323 Bacteria 4777
6 Ga0055536_1003944 3300003781 Bacteria 7780
7 Ga0055531_10000293 3300003794 Bacteria 49990
8 Ga0065165_1000088 3300005262 Bacteria 152328
9 Ga0065714_10003442 3300005288 Bacteria 8456
10 Ga0065714_10007686 3300005288 Bacteria 4108
11 Ga0065714_10064437 3300005288 Bacteria 115817
12 Ga0065714_10067035 3300005288 Bacteria 5972
13 Ga0070670_100071010 3300005331 Bacteria 2989
14 Ga0068869_100002899 3300005334 Bacteria 10426
15 Ga0070666_10000074 3300005335 Bacteria 72739
16 Ga0070668_100105758 3300005347 Unclassified 2235
17 Ga0070671_100050057 3300005355 Bacteria 3476
18 Ga0070671_100066331 3300005355 Bacteria 3008
19 Ga0070667_100003389 3300005367 Bacteria 13585
20 Ga0070678_100029572 3300005456 Bacteria 3754
21 Ga0070672_100107860 3300005543 Bacteria 2267
22 Ga0070665_100000009 3300005548 Bacteria 562640
23 Ga0070665_100000585 3300005548 Bacteria 50839
24 Ga0068859_100000064 3300005617 Bacteria 104971
25 Ga0068859_100146573 3300005617 Unclassified 2436
26 Ga0068864_100031912 3300005618 Bacteria 4472
27 Ga0068863_100009358 3300005841 Bacteria 9560
28 Ga0068858_100003239 3300005842 Bacteria 16236
29 Ga0068860_100000239 3300005843 Bacteria 84335
30 Ga0068860_100001657 3300005843 Bacteria 23829
31 Ga0068860_100022473 3300005843 Bacteria 6099
32 Ga0068862_100194147 3300005844 Unclassified 1828
33 Ga0097621_100004035 3300006237 Bacteria 10182
34 Ga0097621_100113565 3300006237 Bacteria 2291
35 Ga0068871_100046859 3300006358 Unclassified 3483
36 Ga0097620_100000064 3300006931 Bacteria 104971
37 Ga0097620_100146569 3300006931 Unclassified 2436
38 Ga0105244_10000046 3300009036 Bacteria 143184
39 Ga0105240_10011264 3300009093 Bacteria 12469
40 Ga0105245_10073907 3300009098 Bacteria 3101
41 Ga0105243_10022410 3300009148 Bacteria 4800
42 Ga0105241_10001108 3300009174 Bacteria 20503
43 Ga0105242_10002098 3300009176 Bacteria 15701
44 Ga0105242_10067745 3300009176 Unclassified 2952
45 Ga0105237_10000052 3300009545 Bacteria 160459
46 Ga0105237_10001789 3300009545 Bacteria 27801
47 Ga0105237_10001976 3300009545 Bacteria 26087
48 Ga0105237_10003077 3300009545 Bacteria 20107
49 Ga0105237_10073920 3300009545 Bacteria 3400
50 Ga0105249_10031954 3300009553 Bacteria 4761
51 Ga0105239_10010496 3300010375 Bacteria 10353
52 Ga0105239_10182854 3300010375 Bacteria 2345
53 Ga0157373_10022162 3300013100 Bacteria 4609
54 Ga0157370_10003196 3300013104 Bacteria 19379
55 Ga0157370_10060187 3300013104 Unclassified 3607
56 Ga0157369_10006651 3300013105 Bacteria 13357
57 Ga0157374_10084649 3300013296 Bacteria 3014
58 Ga0157378_10005301 3300013297 Bacteria 11328
59 Ga0157378_10074975 3300013297 Unclassified 3045
60 Ga0157378_10176069 3300013297 Bacteria 2009
61 Ga0157375_10034517 3300013308 Bacteria 4821
62 Ga0182008_10001165 3300014497 Bacteria 18130
63 Ga0182006_1000323 3300015261 Bacteria 41598
64 Ga0163161_10000019 3300017792 Bacteria 216758
65 Ga0163161_10029810 3300017792 Unclassified 3878
66 Ga0209676_1001270 3300025292 Bacteria 26213
67 Ga0209257_1000025 3300025304 Bacteria 724838
68 Ga0207655_1000034 3300025728 Bacteria 364737
69 Ga0207680_10000034 3300025903 Bacteria 74519
70 Ga0207654_10022443 3300025911 Bacteria 3368
71 Ga0207695_10024671 3300025913 Bacteria 6754
72 Ga0207671_10000818 3300025914 Bacteria 39395
73 Ga0207671_10004773 3300025914 Bacteria 12778
74 Ga0207671_10014992 3300025914 Bacteria 6092
75 Ga0207671_10040328 3300025914 Bacteria 3456
76 Ga0207650_10019164 3300025925 Bacteria 4807
77 Ga0207686_10020677 3300025934 Bacteria 3764
78 Ga0207686_10031333 3300025934 Unclassified 3156
79 Ga0207704_10078410 3300025938 Unclassified 2125
80 Ga0207691_10048330 3300025940 Bacteria 3901
81 Ga0207689_10003788 3300025942 Bacteria 13780
82 Ga0207689_10021386 3300025942 Bacteria 5439
83 Ga0207712_10023055 3300025961 Bacteria 4104
84 Ga0207677_10016378 3300026023 Bacteria 4389
85 Ga0207703_10009000 3300026035 Bacteria 7864
86 Ga0207641_10000212 3300026088 Bacteria 75285
87 Ga0207676_10005351 3300026095 Bacteria 9091
88 Ga0207676_10063050 3300026095 Bacteria 2943
89 Ga0207683_10195159 3300026121 Bacteria 1839
90 Ga0268266_10000014 3300028379 Bacteria 644033
91 Ga0268266_10000060 3300028379 Bacteria 269063
92 Ga0268264_10000290 3300028381 Bacteria 84435
93 Ga0268264_10002841 3300028381 Bacteria 15108
94 Ga0268264_10036245 3300028381 Bacteria 4062
95 Ga0307515_10000078 3300028794 Bacteria 227988
96 Ga0307515_10000412 3300028794 Bacteria 103361
97 Ga0307515_10003343 3300028794 Bacteria 33898
98 Ga0307511_10005051 3300030521 Bacteria 13456
99 Ga0316177_1126724 3300030731 Bacteria 4037
100 Ga0316176_1181925 3300030732 Bacteria 6869
101 Ga0316183_1154697 3300030742 Bacteria 4645
102 Ga0316181_1038708 3300030744 Bacteria 10810
103 Ga0307509_10119903 3300031507 Unclassified 2611
104 Ga0307516_10145990 3300031730 Bacteria 2131
105 Ga0307413_10001519 3300031824 Bacteria 8893
106 Ga0307414_10028989 3300032004 Bacteria 3597
107 Ga0307411_10000009 3300032005 Bacteria 319906
108 Ga0307510_10034765 3300033180 Bacteria 5635
109 Ga0316596_1001255 3300033541 Bacteria 5021
110 Ga0439447_000193 3300041407 Bacteria 21766
111 Ga0439431_0007942 3300041997 Bacteria 2375
112 Ga0466971_0036246 3300044719 Bacteria 2212
113 Ga0495638_0000008 3300046460 Bacteria 565643
114 Ga0495638_0011794 3300046460 Bacteria 6017
115 Ga0495610_0001323 3300046512 Bacteria 21995
116 Ga0495648_0007717 3300046524 Bacteria 8572
117 Ga0495633_0000005 3300046558 Bacteria 357644
118 Ga0495611_0000084 3300046648 Bacteria 66870
119 Ga0495611_0000338 3300046648 Bacteria 30531
120 Ga0495672_0053176 3300047320 Unclassified 2375
121 Ga0495687_000379 3300047443 Bacteria 55445
122 Ga0495686_0000298 3300047472 Bacteria 85528
123 Ga0496116_0000075 3300048919 Bacteria 231674
124 Ga0496124_0025133 3300048927 Bacteria 5400
125 Ga0496125_0000070 3300048928 Bacteria 245793
126 Ga0496126_0005216 3300048929 Bacteria 14994
127 Ga0496126_0046163 3300048929 Bacteria 3998
128 Ga0501043_0044790 3300049579 Bacteria 3479
129 Ga0501249_001828 3300049679 Bacteria 4335
130 Ga0501241_000112 3300049758 Bacteria 17674
131 Ga0501266_000013 3300049763 Bacteria 183849
132 Ga0500644_0008058 3300053088 Bacteria 2769
133 Ga0500644_0027479 3300053088 Bacteria 1771
134 Ga0500646_0001488 3300053090 Bacteria 6161
135 Ga0500583_0002631 3300053092 Bacteria 5452
136 Ga0500651_0002603 3300053093 Bacteria 9591
137 Ga0500641_0000012 3300053096 Bacteria 164908
138 Ga0500658_0000005 3300053134 Bacteria 369268
139 Ga0500568_0003664 3300053139 Bacteria 8447
140 Ga0500604_0001780 3300053151 Bacteria 6021
141 Ga0500616_0000003 3300053153 Bacteria 1220687
142 Ga0500622_0000024 3300053156 Bacteria 249623
143 Ga0500622_0000042 3300053156 Bacteria 161253
144 Ga0500622_0000711 3300053156 Bacteria 29208
145 Ga0500622_0008520 3300053156 Bacteria 5728
146 Ga0500584_001081 3300053726 Bacteria 8990
147 Ga0466962_0007615 3300061719 Bacteria 5193

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044719 Ga0466971_0036246 Ga0466971_0036246_812_2149 424
2 3300041997 Ga0439431_0007942 Ga0439431_0007942_992_2320 442
3 3300009176 Ga0105242_10067745 Ga0105242_100677452 477
4 3300009093 Ga0105240_10011264 Ga0105240_100112646 478
5 3300009545 Ga0105237_10001789 Ga0105237_1000178915 478
6 3300010375 Ga0105239_10010496 Ga0105239_100104964 478
7 3300047443 Ga0495687_000379 Ga0495687_000379_51735_53231 478
8 3300046460 Ga0495638_0000008 Ga0495638_0000008_48563_50188 479
9 3300053153 Ga0500616_0000003 Ga0500616_0000003_489803_491428 479
10 3300005288 Ga0065714_10067035 Ga0065714_100670352 487
11 3300013297 Ga0157378_10074975 Ga0157378_100749752 488
12 3300013297 Ga0157378_10176069 Ga0157378_101760692 488
13 3300061719 Ga0466962_0007615 Ga0466962_0007615_3512_5062 489
14 3300031730 Ga0307516_10145990 Ga0307516_101459902 490
15 3300009545 Ga0105237_10003077 Ga0105237_100030778 491
16 3300025934 Ga0207686_10031333 Ga0207686_100313332 493
17 3300033541 Ga0316596_1001255 Ga0316596_10012552 493
18 iso_pu_bacteria 2739367656 2739617699 496
19 3300005456 Ga0070678_100029572 Ga0070678_1000295722 497
20 3300005543 Ga0070672_100107860 Ga0070672_1001078601 497
21 3300026121 Ga0207683_10195159 Ga0207683_101951591 497
22 iso_pu_bacteria 2842903701 2842908418 497
23 iso_pu_bacteria 8055588893 8055591858 497
24 iso_pu_bacteria 2818991437 2819548962 498
25 iso_pu_bacteria 2904445276 2904445324 498
26 iso_pu_bacteria 2919191525 2919194711 498
27 3300009545 Ga0105237_10073920 Ga0105237_100739202 499
28 3300025914 Ga0207671_10040328 Ga0207671_100403282 499
29 iso_pu_bacteria 2643221667 2644370448 499
30 iso_pu_bacteria 2738541279 2738735538 499
31 iso_pu_bacteria 2738541285 2738768115 499
32 iso_pu_bacteria 2738543007 2739217120 499
33 iso_pu_bacteria 2739367857 2740003713 499
34 iso_pu_bacteria 2739367858 2740008530 499
35 iso_pu_bacteria 2857618242 2857622381 499
36 iso_pu_bacteria 2910245624 2910247455 499
37 iso_pu_bacteria 2929150217 2929150921 499
38 3300003781 Ga0055536_1003944 Ga0055536_10039442 500
39 3300005262 Ga0065165_1000088 Ga0065165_100008819 500
40 3300013104 Ga0157370_10060187 Ga0157370_100601872 500
41 3300025292 Ga0209676_1001270 Ga0209676_10012704 500
42 3300030742 Ga0316183_1154697 Ga0316183_11546971 500
43 3300030744 Ga0316181_1038708 Ga0316181_10387089 500
44 3300046648 Ga0495611_0000084 Ga0495611_0000084_19682_21274 500
45 3300053093 Ga0500651_0002603 Ga0500651_0002603_6886_8409 500
46 iso_pu_bacteria 2522125168 2522551682 500
47 iso_pu_bacteria 2910245624 2910250469 500
48 iso_pu_bacteria 2911138879 2911140026 500
49 3300003322 rootL2_10101907 rootL2_101019072 501
50 3300030732 Ga0316176_1181925 Ga0316176_11819252 501
51 iso_pu_bacteria 8055588893 8055591310 501
52 iso_pu_bacteria 8055588893 8055592146 501
53 3300005288 Ga0065714_10064437 Ga0065714_1006443717 502
54 3300005548 Ga0070665_100000585 Ga0070665_1000005854 502
55 3300005617 Ga0068859_100146573 Ga0068859_1001465733 502
56 3300006931 Ga0097620_100146569 Ga0097620_1001465693 502
57 3300009545 Ga0105237_10000052 Ga0105237_1000005298 502
58 3300013100 Ga0157373_10022162 Ga0157373_100221622 502
59 3300014497 Ga0182008_10001165 Ga0182008_100011658 502
60 3300015261 Ga0182006_1000323 Ga0182006_100032326 502
61 3300017792 Ga0163161_10029810 Ga0163161_100298102 502
62 3300025914 Ga0207671_10000818 Ga0207671_100008183 502
63 3300028379 Ga0268266_10000060 Ga0268266_10000060127 502
64 3300028794 Ga0307515_10000078 Ga0307515_1000007877 502
65 3300030731 Ga0316177_1126724 Ga0316177_11267242 502
66 3300033180 Ga0307510_10034765 Ga0307510_100347652 502
67 3300046460 Ga0495638_0011794 Ga0495638_0011794_3298_4869 502
68 3300046512 Ga0495610_0001323 Ga0495610_0001323_18595_20124 502
69 3300046524 Ga0495648_0007717 Ga0495648_0007717_6411_7982 502
70 3300047472 Ga0495686_0000298 Ga0495686_0000298_14703_16301 502
71 3300053088 Ga0500644_0027479 Ga0500644_0027479_122_1693 502
72 3300053092 Ga0500583_0002631 Ga0500583_0002631_2439_4010 502
73 3300053139 Ga0500568_0003664 Ga0500568_0003664_2893_4464 502
74 3300053151 Ga0500604_0001780 Ga0500604_0001780_3775_5379 502
75 3300053156 Ga0500622_0000024 Ga0500622_0000024_239685_241289 502
76 3300053156 Ga0500622_0000711 Ga0500622_0000711_25834_27405 502
77 3300005288 Ga0065714_10003442 Ga0065714_100034425 503
78 3300005843 Ga0068860_100000239 Ga0068860_10000023925 503
79 3300005843 Ga0068860_100022473 Ga0068860_1000224733 503
80 3300009036 Ga0105244_10000046 Ga0105244_10000046118 503
81 3300009553 Ga0105249_10031954 Ga0105249_100319542 503
82 3300013104 Ga0157370_10003196 Ga0157370_1000319617 503
83 3300013308 Ga0157375_10034517 Ga0157375_100345172 503
84 3300017792 Ga0163161_10000019 Ga0163161_10000019144 503
85 3300025728 Ga0207655_1000034 Ga0207655_1000034147 503
86 3300025913 Ga0207695_10024671 Ga0207695_100246712 503
87 3300025914 Ga0207671_10004773 Ga0207671_100047735 503
88 3300026023 Ga0207677_10016378 Ga0207677_100163782 503
89 3300028381 Ga0268264_10000290 Ga0268264_1000029035 503
90 3300028381 Ga0268264_10002841 Ga0268264_100028413 503
91 3300030521 Ga0307511_10005051 Ga0307511_100050519 503
92 3300031824 Ga0307413_10001519 Ga0307413_100015196 503
93 3300032004 Ga0307414_10028989 Ga0307414_100289892 503
94 3300032005 Ga0307411_10000009 Ga0307411_10000009130 503
95 3300041407 Ga0439447_000193 Ga0439447_000193_4490_6019 503
96 3300046648 Ga0495611_0000338 Ga0495611_0000338_21336_22916 503
97 3300049579 Ga0501043_0044790 Ga0501043_0044790_416_2002 503
98 3300049679 Ga0501249_001828 Ga0501249_001828_909_2438 503
99 3300049763 Ga0501266_000013 Ga0501266_000013_162040_163569 503
100 3300053088 Ga0500644_0008058 Ga0500644_0008058_653_2182 503
101 3300053090 Ga0500646_0001488 Ga0500646_0001488_3448_4977 503
102 3300053096 Ga0500641_0000012 Ga0500641_0000012_46197_47726 503
103 3300053134 Ga0500658_0000005 Ga0500658_0000005_174351_175880 503
104 3300053726 Ga0500584_001081 Ga0500584_001081_3991_5520 503
105 3300005331 Ga0070670_100071010 Ga0070670_1000710103 504
106 3300005355 Ga0070671_100050057 Ga0070671_1000500573 504
107 3300005367 Ga0070667_100003389 Ga0070667_10000338912 504
108 3300005618 Ga0068864_100031912 Ga0068864_1000319122 504
109 3300006237 Ga0097621_100113565 Ga0097621_1001135652 504
110 3300013297 Ga0157378_10005301 Ga0157378_100053012 504
111 3300025925 Ga0207650_10019164 Ga0207650_100191642 504
112 3300026095 Ga0207676_10063050 Ga0207676_100630503 504
113 3300028794 Ga0307515_10000412 Ga0307515_1000041247 504
114 3300028794 Ga0307515_10003343 Ga0307515_1000334311 504
115 3300031507 Ga0307509_10119903 Ga0307509_101199032 504
116 iso_pu_bacteria 2643221600 2644012755 504
117 iso_pu_bacteria 2643221716 2644641776 504
118 iso_pu_bacteria 8054307821 8054307941 504
119 3300005288 Ga0065714_10007686 Ga0065714_100076864 505
120 3300005334 Ga0068869_100002899 Ga0068869_1000028998 505
121 3300005335 Ga0070666_10000074 Ga0070666_1000007436 505
122 3300005347 Ga0070668_100105758 Ga0070668_1001057582 505
123 3300005355 Ga0070671_100066331 Ga0070671_1000663312 505
124 3300005617 Ga0068859_100000064 Ga0068859_10000006477 505
125 3300005841 Ga0068863_100009358 Ga0068863_1000093585 505
126 3300005842 Ga0068858_100003239 Ga0068858_1000032395 505
127 3300005843 Ga0068860_100001657 Ga0068860_10000165716 505
128 3300006237 Ga0097621_100004035 Ga0097621_1000040355 505
129 3300006358 Ga0068871_100046859 Ga0068871_1000468592 505
130 3300006931 Ga0097620_100000064 Ga0097620_10000006477 505
131 3300009098 Ga0105245_10073907 Ga0105245_100739072 505
132 3300009174 Ga0105241_10001108 Ga0105241_1000110819 505
133 3300009545 Ga0105237_10001976 Ga0105237_1000197619 505
134 3300013105 Ga0157369_10006651 Ga0157369_100066512 505
135 3300013296 Ga0157374_10084649 Ga0157374_100846492 505
136 3300025903 Ga0207680_10000034 Ga0207680_1000003430 505
137 3300025911 Ga0207654_10022443 Ga0207654_100224432 505
138 3300025914 Ga0207671_10014992 Ga0207671_100149923 505
139 3300025938 Ga0207704_10078410 Ga0207704_100784102 505
140 3300025940 Ga0207691_10048330 Ga0207691_100483303 505
141 3300025942 Ga0207689_10003788 Ga0207689_100037885 505
142 3300025961 Ga0207712_10023055 Ga0207712_100230552 505
143 3300026035 Ga0207703_10009000 Ga0207703_100090004 505
144 3300026088 Ga0207641_10000212 Ga0207641_1000021272 505
145 3300026095 Ga0207676_10005351 Ga0207676_100053513 505
146 3300028381 Ga0268264_10036245 Ga0268264_100362452 505
147 3300048919 Ga0496116_0000075 Ga0496116_0000075_57302_58879 505
148 3300048927 Ga0496124_0025133 Ga0496124_0025133_1004_2581 505
149 3300048928 Ga0496125_0000070 Ga0496125_0000070_78129_79706 505
150 3300048929 Ga0496126_0046163 Ga0496126_0046163_1128_2705 505
151 iso_pu_bacteria 8055588893 8055590558 505
152 iso_pu_bacteria 8055588893 8055591854 505
153 3300005844 Ga0068862_100194147 Ga0068862_1001941471 506
154 3300009148 Ga0105243_10022410 Ga0105243_100224103 506
155 3300009176 Ga0105242_10002098 Ga0105242_100020982 506
156 3300025934 Ga0207686_10020677 Ga0207686_100206772 506
157 3300025942 Ga0207689_10021386 Ga0207689_100213862 506
158 3300053156 Ga0500622_0008520 Ga0500622_0008520_1091_2683 506
159 3300005548 Ga0070665_100000009 Ga0070665_100000009352 508
160 3300028379 Ga0268266_10000014 Ga0268266_10000014320 508
161 3300047320 Ga0495672_0053176 Ga0495672_0053176_139_1701 508
162 3300046558 Ga0495633_0000005 Ga0495633_0000005_250415_251944 509
163 3300003316 rootH1_10037346 rootH1_100373465 510
164 3300003322 rootL2_10011654 rootL2_100116547 510
165 3300003322 rootL2_10082820 rootL2_100828203 510
166 3300003323 rootH1_10109696 rootH1_101096962 510
167 3300003794 Ga0055531_10000293 Ga0055531_100002935 510
168 3300010375 Ga0105239_10182854 Ga0105239_101828543 510
169 3300025304 Ga0209257_1000025 Ga0209257_1000025401 510
170 3300048929 Ga0496126_0005216 Ga0496126_0005216_1480_3015 510
171 3300049758 Ga0501241_000112 Ga0501241_000112_4270_5805 510
172 3300053156 Ga0500622_0000042 Ga0500622_0000042_33361_34893 510

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12771

SusD-like_2

Starch-binding associating with outer membrane

40

510

0.87

PF12741

SusD-like

Susd and RagB outer membrane lipoprotein

67

540

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5j5u-assembly4.cif.gz_D fjoh_4561 chitin-binding protein 0.9074 40 510
5j5u-assembly1.cif.gz_A fjoh_4561 chitin-binding protein 0.907 40 510
5j5u-assembly3.cif.gz_C fjoh_4561 chitin-binding protein 0.9065 40 510
5j5u-assembly4.cif.gz_D fjoh_4561 chitin-binding protein 0.9054 40 510
5j5u-assembly1.cif.gz_A fjoh_4561 chitin-binding protein 0.9051 40 510
ID Description Score Start End Superfamily
3mx3B03 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);SusD-like, tetratrico peptide repeats domain 0.8814 362 456 1.20.120.840
4q69A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8214 33 509 1.25.40.390
4q69A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8197 33 509 1.25.40.390
5j90A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8062 45 509 1.25.40.390
3ejnA03 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);SusD-like, tetratrico peptide repeats domain 0.7905 362 455 1.20.120.840
ID Description Score Start End GO Terms
AF-A0A3C0GFI4-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9588 362 510
AF-A0A519TG32-F1-model_v4 deleted 0.9507 97 255
AF-A0A258KHF4-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9505 24 461
AF-A0A258LAX9-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9467 116 496
AF-A0A7L7LH20-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9449 21 510

Feature Viewer

pLDDT pTM Quality
89.86 0.89 High
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Predicted Structure (AlphaFold2)

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