F260786

General Info

Members Datasets Scaffolds Average Seq Length
172 105 172 552

Family's Representative Sequence

Representative Sequence 3300014969|Ga0157376_10000205|Ga0157376_1000020524
Length 565
Sequence MTIFEQILKARGLDNNEAAKLFFEPDYQMRHDPFLLPDMGAAVSRLVEARERQEHITIYGDYDIDGLTATTVLLDAFSSFDFRFVDAFIPNRFREGYGMTEQAVEEIAATGATLIVTVDCGSLSEGPIMRAKELGVDVIVTDHHNVAPVQPPAVAVINPKRLLQDYPDRYEKFRLVEQVDGESLYPFLDLPGVGVAFKLVQALQTQLDGLEIGQEKWLLDLVALGTVCDVVTLVDENRLHVYWGLKVLAKTRRPGLKALMGVAGAEPSHLTARTLGFGLGPRMNAAGRLETAKYAQDMLLATDGMIALELAQKLDEFNVARRKAQDIIYKAALEQAEQYQEDSVLVLSHAEWSHGIIGIVAAKILERYKKPTYVFQELGDESKGSARSYGDFSVADAIRASDDIITKGGGHKLAAGVTLPTQNIDAFRQRVNEYFVSLNLPPQISLLLPSADVTADDFSEATEELVTELSRLEPYGSGNPEPIICFENVTVMDVRRMGSESQHVKLSLQDTNDKKLDVVAFSAPEEWFAEVGRQVSVWVELSLNEWRGVRSVQGRLLHLVYLPEL

Samples

Sample ID Description Type Environment
1 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
33 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
36 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
37 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
59 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
60 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
61 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
62 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
63 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
64 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
67 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
72 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
73 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
74 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
75 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
76 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
77 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
78 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
79 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
80 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
81 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
86 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
87 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
88 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
89 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
90 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
91 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
92 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
93 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
94 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
95 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
96 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
97 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
98 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
99 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
100 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
101 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
102 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
103 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
104 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
105 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 28.49
Nodule 0
Rhizoplane 0
Rhizosphere 69.19
Stem 0
Stem Tuber 0
Unclassified 2.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10009757 3300001989 Bacteria 3571
2 JGI24735J21928_10000077 3300002067 Bacteria 39575
3 JGI24738J21930_10000400 3300002075 Bacteria 12121
4 rootH2_10000659 3300003320 Bacteria 146718
5 rootL2_10050750 3300003322 Bacteria 17435
6 Ga0065715_10092669 3300005293 Bacteria 4981
7 Ga0070658_10000035 3300005327 Bacteria 145828
8 Ga0070683_100001532 3300005329 Bacteria 17886
9 Ga0070683_100011353 3300005329 Bacteria 7696
10 Ga0070660_100000215 3300005339 Bacteria 38482
11 Ga0070660_100069568 3300005339 Unclassified 2745
12 Ga0070661_100018436 3300005344 Bacteria 4960
13 Ga0070659_100004463 3300005366 Bacteria 9994
14 Ga0070662_100000332 3300005457 Bacteria 28364
15 Ga0070684_100032400 3300005535 Bacteria 4454
16 Ga0068855_100000138 3300005563 Bacteria 92676
17 Ga0068855_100003673 3300005563 Bacteria 18770
18 Ga0070664_100002795 3300005564 Bacteria 14103
19 Ga0068857_100000084 3300005577 Bacteria 54402
20 Ga0068857_100000706 3300005577 Bacteria 24865
21 Ga0068857_100023129 3300005577 Bacteria 5467
22 Ga0068854_100029014 3300005578 Bacteria 3827
23 Ga0068856_100000608 3300005614 Bacteria 39195
24 Ga0068856_100003088 3300005614 Bacteria 17007
25 Ga0068852_100000044 3300005616 Bacteria 89653
26 Ga0068852_100000051 3300005616 Bacteria 81538
27 Ga0068852_100017766 3300005616 Bacteria 5589
28 Ga0081455_10000006 3300005937 Bacteria 323066
29 Ga0075365_10000003 3300006038 Bacteria 203750
30 Ga0075365_10002312 3300006038 Bacteria 9275
31 Ga0075365_10005857 3300006038 Bacteria 6684
32 Ga0075365_10018646 3300006038 Unclassified 4271
33 Ga0075365_10083793 3300006038 Bacteria 2163
34 Ga0075368_10000697 3300006042 Bacteria 10230
35 Ga0075363_100001546 3300006048 Bacteria 8826
36 Ga0075364_10000496 3300006051 Bacteria 19996
37 Ga0075364_10000735 3300006051 Bacteria 17176
38 Ga0075364_10000910 3300006051 Bacteria 15610
39 Ga0075364_10004406 3300006051 Bacteria 8096
40 Ga0075367_10000011 3300006178 Bacteria 43060
41 Ga0075366_10000670 3300006195 Bacteria 16163
42 Ga0075370_10012900 3300006353 Bacteria 4428
43 Ga0075428_100001647 3300006844 Bacteria 23770
44 Ga0068865_100000560 3300006881 Bacteria 20677
45 Ga0105240_10000004 3300009093 Bacteria 708156
46 Ga0105240_10000118 3300009093 Bacteria 163934
47 Ga0105237_10000002 3300009545 Bacteria 702357
48 Ga0105237_10000488 3300009545 Bacteria 56363
49 Ga0105238_10001880 3300009551 Bacteria 21077
50 Ga0105238_10051772 3300009551 Bacteria 4129
51 Ga0105032_100032 3300009979 Bacteria 23486
52 Ga0105239_10003120 3300010375 Bacteria 20559
53 Ga0105246_10001198 3300011119 Bacteria 15139
54 Ga0105246_10006428 3300011119 Bacteria 7183
55 Ga0105246_10023629 3300011119 Bacteria 3980
56 Ga0157373_10001838 3300013100 Bacteria 16136
57 Ga0157373_10084362 3300013100 Bacteria 2239
58 Ga0157371_10023238 3300013102 Unclassified 4533
59 Ga0157371_10061490 3300013102 Bacteria 2663
60 Ga0157371_10105921 3300013102 Bacteria 1995
61 Ga0157370_10002860 3300013104 Bacteria 20609
62 Ga0157370_10003475 3300013104 Bacteria 18492
63 Ga0157370_10022046 3300013104 Bacteria 6342
64 Ga0157369_10000024 3300013105 Bacteria 225851
65 Ga0157369_10000177 3300013105 Bacteria 89168
66 Ga0157369_10002122 3300013105 Bacteria 23910
67 Ga0157369_10002511 3300013105 Bacteria 21965
68 Ga0157369_10025003 3300013105 Bacteria 6633
69 Ga0157369_10037361 3300013105 Bacteria 5316
70 Ga0157374_10000960 3300013296 Bacteria 25007
71 Ga0157372_10000002 3300013307 Bacteria 687862
72 Ga0157372_10000008 3300013307 Bacteria 305449
73 Ga0157372_10095896 3300013307 Bacteria 3380
74 Ga0157377_10003036 3300014745 Bacteria 7524
75 Ga0157377_10026744 3300014745 Bacteria 3091
76 Ga0157376_10000205 3300014969 Bacteria 40924
77 Ga0207705_10000010 3300025909 Bacteria 518023
78 Ga0207695_10000009 3300025913 Bacteria 1034276
79 Ga0207695_10003048 3300025913 Bacteria 24011
80 Ga0207671_10000003 3300025914 Bacteria 1065461
81 Ga0207671_10000008 3300025914 Bacteria 798229
82 Ga0207657_10001512 3300025919 Bacteria 24893
83 Ga0207657_10014441 3300025919 Bacteria 7712
84 Ga0207657_10089602 3300025919 Unclassified 2569
85 Ga0207649_10043157 3300025920 Bacteria 2755
86 Ga0207649_10059690 3300025920 Unclassified 2394
87 Ga0207690_10004964 3300025932 Bacteria 7853
88 Ga0207706_10001897 3300025933 Bacteria 20526
89 Ga0207704_10000232 3300025938 Bacteria 27521
90 Ga0207679_10002334 3300025945 Bacteria 11669
91 Ga0207667_10000005 3300025949 Bacteria 715503
92 Ga0207640_10021452 3300025981 Bacteria 3850
93 Ga0207702_10000190 3300026078 Bacteria 73848
94 Ga0207702_10001028 3300026078 Bacteria 28634
95 Ga0207674_10002117 3300026116 Bacteria 25105
96 Ga0207674_10005607 3300026116 Bacteria 14881
97 Ga0207674_10017029 3300026116 Bacteria 7936
98 Ga0207698_10000022 3300026142 Bacteria 131985
99 Ga0207698_10000073 3300026142 Bacteria 67094
100 Ga0207698_10012285 3300026142 Bacteria 5597
101 Ga0209813_10000508 3300027866 Bacteria 9186
102 Ga0314311_1214101 3300030733 Bacteria 8139
103 Ga0316179_1089912 3300030734 Unclassified 2477
104 Ga0316183_1003180 3300030742 Bacteria 30203
105 Ga0316183_1064144 3300030742 Bacteria 4511
106 Ga0316183_1185833 3300030742 Bacteria 6237
107 Ga0316181_1151728 3300030744 Bacteria 17131
108 Ga0316182_1030052 3300030745 Bacteria 42417
109 Ga0316182_1031877 3300030745 Bacteria 7961
110 Ga0316182_1268732 3300030745 Bacteria 15179
111 Ga0307509_10023020 3300031507 Bacteria 7005
112 Ga0307405_10027766 3300031731 Unclassified 3287
113 Ga0307406_10000002 3300031901 Bacteria 255753
114 Ga0307406_10000079 3300031901 Bacteria 53858
115 Ga0373959_0000003 3300034820 Bacteria 105085
116 Ga0395899_0003930 3300037312 Bacteria 11715
117 Ga0395899_0022813 3300037312 Bacteria 4742
118 Ga0395900_0000001 3300037418 Bacteria 931146
119 Ga0395898_0000002 3300037466 Bacteria 931013
120 Ga0395901_0000006 3300038443 Bacteria 514112
121 Ga0395901_0012753 3300038443 Bacteria 8525
122 Ga0395901_0139935 3300038443 Bacteria 2544
123 Ga0439461_0000664 3300041410 Bacteria 4972
124 Ga0439446_0000005 3300042156 Bacteria 101649
125 Ga0439434_0000771 3300042435 Bacteria 9208
126 Ga0439464_0000002 3300042439 Bacteria 79371
127 Ga0450918_000259 3300042531 Bacteria 11865
128 Ga0466965_0001133 3300044683 Bacteria 10436
129 Ga0495638_0000070 3300046460 Bacteria 166954
130 Ga0495638_0000119 3300046460 Bacteria 127603
131 Ga0495660_0000035 3300046810 Bacteria 199140
132 Ga0495660_0001416 3300046810 Bacteria 16447
133 Ga0496124_0124726 3300048927 Bacteria 2053
134 Ga0501034_0000942 3300049571 Bacteria 42231
135 Ga0501034_0001705 3300049571 Bacteria 28293
136 Ga0501037_0000001 3300049573 Bacteria 753276
137 Ga0501038_0010182 3300049574 Bacteria 8603
138 Ga0501043_0097311 3300049579 Bacteria 2314
139 nmdc:mga03n38_17091_c1 3300050490 Bacteria 2834
140 nmdc:mga00v17_152_c1 3300050491 Bacteria 40251
141 nmdc:mga00v17_585_c1 3300050491 Bacteria 20310
142 nmdc:mga00v17_793_c1 3300050491 Bacteria 17212
143 nmdc:mga0yw44_182_c1 3300050492 Bacteria 22055
144 nmdc:mga0yw44_25_c1 3300050492 Bacteria 61711
145 nmdc:mga0yw44_31_c1 3300050492 Bacteria 51752
146 nmdc:mga0yw44_6_c1 3300050492 Bacteria 272478
147 nmdc:mga0yw44_8715_c1 3300050492 Unclassified 4000
148 nmdc:mga0yw44_93_c1 3300050492 Bacteria 31138
149 nmdc:mga0k408_29599_c2 3300050493 Bacteria 2069
150 nmdc:mga0k408_90_c1 3300050493 Bacteria 29972
151 nmdc:mga06z11_1358_c1 3300050494 Bacteria 9063
152 nmdc:mga04h51_1018_c1 3300050495 Bacteria 6471
153 Ga0500643_002040 3300053087 Bacteria 10824
154 Ga0500646_0000001 3300053090 Bacteria 273936
155 Ga0500583_0000140 3300053092 Bacteria 30524
156 Ga0500583_0040371 3300053092 Bacteria 2114
157 Ga0500651_0000019 3300053093 Bacteria 141974
158 Ga0500651_0000246 3300053093 Bacteria 33131
159 Ga0500641_0000001 3300053096 Bacteria 1115973
160 Ga0500555_000005 3300053103 Bacteria 342334
161 Ga0500562_000001 3300053108 Bacteria 1178987
162 Ga0500569_000002 3300053109 Bacteria 127605
163 Ga0500594_0000024 3300053118 Bacteria 52779
164 Ga0500652_000001 3300053131 Bacteria 946868
165 Ga0500577_0000085 3300053142 Bacteria 21884
166 Ga0500577_0022016 3300053142 Bacteria 2109
167 Ga0500588_0000039 3300053146 Bacteria 24643
168 Ga0500604_0002839 3300053151 Unclassified 4705
169 Ga0500616_0000067 3300053153 Bacteria 236311
170 Ga0500616_0008259 3300053153 Bacteria 6488
171 Ga0500570_006489 3300053724 Bacteria 6354
172 Ga0500570_029076 3300053724 Bacteria 3005

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048927 Ga0496124_0124726 Ga0496124_0124726_15_1589 504
2 3300053087 Ga0500643_002040 Ga0500643_002040_9211_10725 504
3 3300049579 Ga0501043_0097311 Ga0501043_0097311_102_1619 505
4 3300053153 Ga0500616_0008259 Ga0500616_0008259_956_2536 506
5 3300050493 nmdc:mga0k408_29599_c2 nmdc:mga0k408_29599_c2_91_1629 507
6 3300030745 Ga0316182_1268732 Ga0316182_12687329 509
7 3300006038 Ga0075365_10005857 Ga0075365_100058572 518
8 3300006042 Ga0075368_10000697 Ga0075368_100006976 518
9 3300006048 Ga0075363_100001546 Ga0075363_1000015461 518
10 3300006051 Ga0075364_10000910 Ga0075364_1000091013 518
11 3300006178 Ga0075367_10000011 Ga0075367_1000001130 518
12 3300006353 Ga0075370_10012900 Ga0075370_100129004 518
13 3300027866 Ga0209813_10000508 Ga0209813_100005089 518
14 3300050490 nmdc:mga03n38_17091_c1 nmdc:mga03n38_17091_c1_1122_2813 518
15 3300050491 nmdc:mga00v17_152_c1 nmdc:mga00v17_152_c1_16882_18573 518
16 3300050492 nmdc:mga0yw44_6_c1 nmdc:mga0yw44_6_c1_5833_7524 518
17 3300050494 nmdc:mga06z11_1358_c1 nmdc:mga06z11_1358_c1_3525_5216 518
18 3300050495 nmdc:mga04h51_1018_c1 nmdc:mga04h51_1018_c1_588_2279 518
19 3300006038 Ga0075365_10018646 Ga0075365_100186464 530
20 3300050492 nmdc:mga0yw44_8715_c1 nmdc:mga0yw44_8715_c1_993_2633 530
21 3300013105 Ga0157369_10037361 Ga0157369_100373612 532
22 3300053093 Ga0500651_0000019 Ga0500651_0000019_119539_121164 532
23 3300053118 Ga0500594_0000024 Ga0500594_0000024_16168_17793 532
24 3300005577 Ga0068857_100023129 Ga0068857_1000231294 537
25 3300026116 Ga0207674_10017029 Ga0207674_100170295 537
26 3300006038 Ga0075365_10000003 Ga0075365_1000000317 538
27 3300006051 Ga0075364_10000735 Ga0075364_100007359 538
28 3300006051 Ga0075364_10004406 Ga0075364_100044068 538
29 3300050491 nmdc:mga00v17_793_c1 nmdc:mga00v17_793_c1_7117_8754 538
30 3300050492 nmdc:mga0yw44_25_c1 nmdc:mga0yw44_25_c1_22767_24404 538
31 3300003320 rootH2_10000659 rootH2_10000659140 540
32 3300009979 Ga0105032_100032 Ga0105032_10003221 540
33 3300030742 Ga0316183_1064144 Ga0316183_10641443 540
34 3300030744 Ga0316181_1151728 Ga0316181_115172812 540
35 3300030745 Ga0316182_1031877 Ga0316182_10318774 540
36 3300005293 Ga0065715_10092669 Ga0065715_100926694 541
37 3300005577 Ga0068857_100000084 Ga0068857_1000000844 541
38 3300005616 Ga0068852_100000051 Ga0068852_10000005118 541
39 3300006051 Ga0075364_10000496 Ga0075364_100004968 541
40 3300009545 Ga0105237_10000002 Ga0105237_10000002745 541
41 3300009551 Ga0105238_10001880 Ga0105238_1000188010 541
42 3300013102 Ga0157371_10023238 Ga0157371_100232383 541
43 3300014745 Ga0157377_10026744 Ga0157377_100267443 541
44 3300025914 Ga0207671_10000008 Ga0207671_10000008853 541
45 3300026116 Ga0207674_10002117 Ga0207674_1000211730 541
46 3300026142 Ga0207698_10000022 Ga0207698_1000002218 541
47 3300030742 Ga0316183_1185833 Ga0316183_11858332 541
48 3300031507 Ga0307509_10023020 Ga0307509_100230208 541
49 3300034820 Ga0373959_0000003 Ga0373959_0000003_22806_24452 541
50 3300037312 Ga0395899_0003930 Ga0395899_0003930_3291_4976 541
51 3300042435 Ga0439434_0000771 Ga0439434_0000771_6380_8005 541
52 3300050491 nmdc:mga00v17_585_c1 nmdc:mga00v17_585_c1_13462_15099 541
53 3300050492 nmdc:mga0yw44_182_c1 nmdc:mga0yw44_182_c1_10338_11975 541
54 3300053093 Ga0500651_0000246 Ga0500651_0000246_19252_20889 541
55 3300053142 Ga0500577_0000085 Ga0500577_0000085_1362_2999 541
56 3300053142 Ga0500577_0022016 Ga0500577_0022016_296_1921 541
57 3300005563 Ga0068855_100000138 Ga0068855_10000013822 542
58 3300005563 Ga0068855_100003673 Ga0068855_1000036737 542
59 3300005578 Ga0068854_100029014 Ga0068854_1000290144 542
60 3300006038 Ga0075365_10002312 Ga0075365_100023124 542
61 3300013105 Ga0157369_10000024 Ga0157369_1000002417 542
62 3300013307 Ga0157372_10000008 Ga0157372_10000008323 542
63 3300025949 Ga0207667_10000005 Ga0207667_1000000528 542
64 3300025981 Ga0207640_10021452 Ga0207640_100214524 542
65 3300031731 Ga0307405_10027766 Ga0307405_100277663 542
66 3300038443 Ga0395901_0012753 Ga0395901_0012753_4331_5974 542
67 3300044683 Ga0466965_0001133 Ga0466965_0001133_2723_4354 542
68 3300046460 Ga0495638_0000070 Ga0495638_0000070_152806_154449 542
69 3300049571 Ga0501034_0000942 Ga0501034_0000942_30527_32155 542
70 3300049573 Ga0501037_0000001 Ga0501037_0000001_625665_627293 542
71 3300049574 Ga0501038_0010182 Ga0501038_0010182_4870_6498 542
72 3300050492 nmdc:mga0yw44_93_c1 nmdc:mga0yw44_93_c1_17409_19100 542
73 3300053103 Ga0500555_000005 Ga0500555_000005_264444_266072 542
74 3300053151 Ga0500604_0002839 Ga0500604_0002839_81_1730 542
75 3300005614 Ga0068856_100003088 Ga0068856_1000030882 543
76 3300009093 Ga0105240_10000118 Ga0105240_1000011815 543
77 3300010375 Ga0105239_10003120 Ga0105239_100031207 543
78 3300013105 Ga0157369_10002511 Ga0157369_1000251120 543
79 3300025913 Ga0207695_10003048 Ga0207695_1000304827 543
80 3300026078 Ga0207702_10000190 Ga0207702_1000019058 543
81 3300031901 Ga0307406_10000002 Ga0307406_1000000228 543
82 3300031901 Ga0307406_10000079 Ga0307406_1000007918 543
83 3300037312 Ga0395899_0022813 Ga0395899_0022813_2091_3779 543
84 3300037418 Ga0395900_0000001 Ga0395900_0000001_727032_728720 543
85 3300037466 Ga0395898_0000002 Ga0395898_0000002_377286_378974 543
86 3300038443 Ga0395901_0000006 Ga0395901_0000006_22962_24650 543
87 3300042156 Ga0439446_0000005 Ga0439446_0000005_16653_18344 543
88 3300046810 Ga0495660_0001416 Ga0495660_0001416_3354_4994 543
89 3300049571 Ga0501034_0001705 Ga0501034_0001705_10660_12291 543
90 3300050492 nmdc:mga0yw44_31_c1 nmdc:mga0yw44_31_c1_16119_17750 543
91 3300053092 Ga0500583_0040371 Ga0500583_0040371_64_1755 543
92 3300053108 Ga0500562_000001 Ga0500562_000001_682880_684520 543
93 3300053724 Ga0500570_006489 Ga0500570_006489_3023_4654 543
94 3300001989 JGI24739J22299_10009757 JGI24739J22299_100097574 544
95 3300002067 JGI24735J21928_10000077 JGI24735J21928_1000007720 544
96 3300002075 JGI24738J21930_10000400 JGI24738J21930_1000040010 544
97 3300003322 rootL2_10050750 rootL2_1005075012 544
98 3300005327 Ga0070658_10000035 Ga0070658_10000035150 544
99 3300005329 Ga0070683_100001532 Ga0070683_1000015326 544
100 3300005329 Ga0070683_100011353 Ga0070683_1000113535 544
101 3300005339 Ga0070660_100000215 Ga0070660_10000021516 544
102 3300005339 Ga0070660_100069568 Ga0070660_1000695683 544
103 3300005344 Ga0070661_100018436 Ga0070661_1000184364 544
104 3300005366 Ga0070659_100004463 Ga0070659_10000446310 544
105 3300005457 Ga0070662_100000332 Ga0070662_10000033213 544
106 3300005535 Ga0070684_100032400 Ga0070684_1000324003 544
107 3300005564 Ga0070664_100002795 Ga0070664_1000027951 544
108 3300005577 Ga0068857_100000706 Ga0068857_10000070611 544
109 3300005614 Ga0068856_100000608 Ga0068856_10000060823 544
110 3300005616 Ga0068852_100000044 Ga0068852_10000004488 544
111 3300005616 Ga0068852_100017766 Ga0068852_1000177665 544
112 3300005937 Ga0081455_10000006 Ga0081455_10000006133 544
113 3300006038 Ga0075365_10083793 Ga0075365_100837932 544
114 3300006195 Ga0075366_10000670 Ga0075366_1000067012 544
115 3300006844 Ga0075428_100001647 Ga0075428_1000016477 544
116 3300006881 Ga0068865_100000560 Ga0068865_1000005607 544
117 3300009093 Ga0105240_10000004 Ga0105240_10000004781 544
118 3300009545 Ga0105237_10000488 Ga0105237_1000048846 544
119 3300009551 Ga0105238_10051772 Ga0105238_100517724 544
120 3300011119 Ga0105246_10001198 Ga0105246_1000119812 544
121 3300011119 Ga0105246_10006428 Ga0105246_100064288 544
122 3300011119 Ga0105246_10023629 Ga0105246_100236294 544
123 3300013100 Ga0157373_10001838 Ga0157373_1000183813 544
124 3300013100 Ga0157373_10084362 Ga0157373_100843622 544
125 3300013102 Ga0157371_10061490 Ga0157371_100614904 544
126 3300013102 Ga0157371_10105921 Ga0157371_101059212 544
127 3300013104 Ga0157370_10002860 Ga0157370_1000286010 544
128 3300013104 Ga0157370_10003475 Ga0157370_1000347514 544
129 3300013104 Ga0157370_10022046 Ga0157370_100220465 544
130 3300013105 Ga0157369_10000177 Ga0157369_1000017719 544
131 3300013105 Ga0157369_10002122 Ga0157369_1000212210 544
132 3300013105 Ga0157369_10025003 Ga0157369_100250035 544
133 3300013296 Ga0157374_10000960 Ga0157374_1000096011 544
134 3300013307 Ga0157372_10000002 Ga0157372_10000002758 544
135 3300013307 Ga0157372_10095896 Ga0157372_100958964 544
136 3300014745 Ga0157377_10003036 Ga0157377_100030363 544
137 3300014969 Ga0157376_10000205 Ga0157376_1000020524 544
138 3300025909 Ga0207705_10000010 Ga0207705_10000010156 544
139 3300025913 Ga0207695_10000009 Ga0207695_100000091165 544
140 3300025914 Ga0207671_10000003 Ga0207671_100000031221 544
141 3300025919 Ga0207657_10001512 Ga0207657_1000151222 544
142 3300025919 Ga0207657_10014441 Ga0207657_100144417 544
143 3300025919 Ga0207657_10089602 Ga0207657_100896023 544
144 3300025920 Ga0207649_10043157 Ga0207649_100431572 544
145 3300025920 Ga0207649_10059690 Ga0207649_100596903 544
146 3300025932 Ga0207690_10004964 Ga0207690_100049645 544
147 3300025933 Ga0207706_10001897 Ga0207706_100018977 544
148 3300025938 Ga0207704_10000232 Ga0207704_1000023213 544
149 3300025945 Ga0207679_10002334 Ga0207679_100023346 544
150 3300026078 Ga0207702_10001028 Ga0207702_1000102818 544
151 3300026116 Ga0207674_10005607 Ga0207674_100056075 544
152 3300026142 Ga0207698_10000073 Ga0207698_100000739 544
153 3300026142 Ga0207698_10012285 Ga0207698_100122854 544
154 3300030733 Ga0314311_1214101 Ga0314311_12141017 544
155 3300030734 Ga0316179_1089912 Ga0316179_10899122 544
156 3300030742 Ga0316183_1003180 Ga0316183_100318010 544
157 3300030745 Ga0316182_1030052 Ga0316182_103005219 544
158 3300038443 Ga0395901_0139935 Ga0395901_0139935_738_2432 544
159 3300041410 Ga0439461_0000664 Ga0439461_0000664_1936_3630 544
160 3300042439 Ga0439464_0000002 Ga0439464_0000002_67992_69686 544
161 3300042531 Ga0450918_000259 Ga0450918_000259_9598_11295 544
162 3300046460 Ga0495638_0000119 Ga0495638_0000119_12333_13985 544
163 3300046810 Ga0495660_0000035 Ga0495660_0000035_20092_21732 544
164 3300050493 nmdc:mga0k408_90_c1 nmdc:mga0k408_90_c1_19714_21408 544
165 3300053090 Ga0500646_0000001 Ga0500646_0000001_257031_258671 544
166 3300053092 Ga0500583_0000140 Ga0500583_0000140_14224_15864 544
167 3300053096 Ga0500641_0000001 Ga0500641_0000001_640724_642364 544
168 3300053109 Ga0500569_000002 Ga0500569_000002_113619_115271 544
169 3300053131 Ga0500652_000001 Ga0500652_000001_839063_840703 544
170 3300053146 Ga0500588_0000039 Ga0500588_0000039_11106_12758 544
171 3300053153 Ga0500616_0000067 Ga0500616_0000067_146942_148576 544
172 3300053724 Ga0500570_029076 Ga0500570_029076_319_1959 544

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17768

RecJ_OB

RecJ OB domain

453

558

0.96

PF01368

DHH

DHH family

55

226

0.89

PF02272

DHHA1

DHHA1 domain

308

435

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zxp-assembly1.cif.gz_A crystal structure of recj in complex with mn2+ from thermus thermophilus hb8 0.9016 6 543
2zxr-assembly1.cif.gz_A crystal structure of recj in complex with mg2+ from thermus thermophilus hb8 0.8925 6 543
5f56-assembly1.cif.gz_A structure of recj complexed with dna and ssb-ct 0.8895 6 539
6lrd-assembly1.cif.gz_A structure of recj complexed with a 5'-p-dspacer-modified ssdna 0.8615 4 539
5f54-assembly1.cif.gz_A structure of recj complexed with dtmp 0.8407 4 543
ID Description Score Start End Superfamily
5f56A03 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1; 0.9647 299 416 3.10.310.30
af_Q2FXT9_317_441_3.10.310.30 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1; 0.9552 299 416 3.10.310.30
af_P21893_50_326_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9419 31 296 3.90.1640.30
af_Q2FXT9_57_316_3.90.1640.30 Alpha Beta;Alpha-Beta Complex;inorganic pyrophosphatase (n-terminal core); 0.9381 30 295 3.90.1640.30
af_P21893_327_456_3.10.310.30 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1; 0.9323 299 416 3.10.310.30
ID Description Score Start End GO Terms
AF-A0A519LGD9-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9625 36 185 GO:0004527
AF-K1UZQ3-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9538 33 176 GO:0004527
AF-A0A5C8UHK1-F1-model_v4 Single-stranded-DNA-specific exonuclease RecJ 0.9528 72 185 GO:0004527
AF-A0A382P229-F1-model_v4 DDH domain-containing protein 0.9527 25 185 GO:0004527
AF-A0A3D4ITH4-F1-model_v4 deleted 0.9516 196 540

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pLDDT pTM Quality
88.58 0.85 High
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Predicted Structure (AlphaFold2)

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