F260486

General Info

Members Datasets Scaffolds Average Seq Length
172 107 344 414

Family's Representative Sequence

Representative Sequence 3300006042|Ga0075368_10002632|Ga0075368_100026326
Length 435
Sequence MGARSARRPPARGTELGGEWPAPRATGPVEAVVSLPGSKSLTNRALLLAALADGPSVVRRALRSRDTLLMAAALTSLGSAVDTSGEDWAVTPARFDRDAAIDCGLAGTVMRFVPPAAGLSTGTIEFDGDPHMRTRPIGEVLTALRGLGVDVVDDGGGALPFEIRGAGSVRGGLVVIDASASSQFVSALLLAGARYDEGVDVRHDGKPVPSLPHIDMTVAMLREHGVEVDDSEPNRWAVAPGVVKPVDHLIEPDLSNAAPFLALAAVSGGRVTVRDWPASTTQAGDALRDVLQQLGCAVTLDDHGLTVVGPPRLEGIDVDLHDHGELTPAVAALCALAAGPSHLRGIAHIRGHETDRLAALATELGGLGADVVEHPDGLSFRPAPLHGGVFHTYADHRMAHAGVIVGAAVDGVLVENVETTSKTFPDFAGFWSGLF

Samples

Sample ID Description Type Environment
1 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
9 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
18 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
29 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
31 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
32 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
33 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
34 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
35 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
36 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
37 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
38 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
39 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
40 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
41 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
42 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
43 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
44 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
45 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
46 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
47 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
48 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
49 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
50 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
51 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
52 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
53 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
54 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
55 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
56 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
57 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
58 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
64 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
67 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
72 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
73 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
74 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
75 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
76 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
77 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
78 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
79 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
80 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
81 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
82 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
85 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
86 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
87 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
88 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
91 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
92 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
93 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
94 2643221576 Nocardioides sp. Root614 Isolate Unclassified
95 2643221590 Nocardioides sp. Root682 Isolate Unclassified
96 2643221604 Nocardioides sp. Root190 Isolate Unclassified
97 2643221617 Nocardioides sp. Root79 Isolate Unclassified
98 2643221620 Nocardioides sp. Root240 Isolate Unclassified
99 2643221696 Nocardioides sp. Root140 Isolate Unclassified
100 2738541305 Nocardioides sp. CF167 Isolate Unclassified
101 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
102 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
103 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
104 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
105 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
106 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
107 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.86
Metatranscriptomes 0
Isolates 8.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.28
Nodule 0
Rhizoplane 9.3
Rhizosphere 66.28
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075368_10002632 3300006042 Bacteria 5896
2 JGI24739J22299_10009871 3300001989 Bacteria 3549
3 Ga0070683_100121042 3300005329 Bacteria 2472
4 Ga0070668_100101704 3300005347 Bacteria 2278
5 Ga0070667_100056657 3300005367 Bacteria 3311
6 Ga0070681_10122071 3300005458 Bacteria 2539
7 Ga0070679_100005548 3300005530 Bacteria 11691
8 Ga0068870_10064106 3300005840 Bacteria 1984
9 Ga0068860_100000301 3300005843 Bacteria 68703
10 Ga0075365_10008224 3300006038 Bacteria 5905
11 Ga0075365_10038815 3300006038 Bacteria 3098
12 Ga0075365_10059322 3300006038 Bacteria 2550
13 Ga0075368_10003251 3300006042 Bacteria 5411
14 Ga0075363_100013287 3300006048 Bacteria 3986
15 Ga0075363_100016597 3300006048 Bacteria 3640
16 Ga0075363_100025809 3300006048 Bacteria 3001
17 Ga0075363_100026051 3300006048 Bacteria 2989
18 Ga0075364_10011912 3300006051 Bacteria 5299
19 Ga0075364_10068235 3300006051 Bacteria 2338
20 Ga0075364_10068864 3300006051 Bacteria 2328
21 Ga0075362_10030507 3300006177 Bacteria 2328
22 Ga0075367_10080853 3300006178 Bacteria 1966
23 Ga0075370_10018083 3300006353 Bacteria 3819
24 Ga0075370_10071831 3300006353 Bacteria 1980
25 Ga0111539_10041684 3300009094 Bacteria 5517
26 Ga0163161_10006142 3300017792 Bacteria 8317
27 Ga0207647_10035062 3300025904 Bacteria 3200
28 Ga0207652_10004423 3300025921 Bacteria 11451
29 Ga0207664_10061310 3300025929 Bacteria 3001
30 Ga0207661_10217831 3300025944 Bacteria 1686
31 Ga0207668_10058759 3300025972 Bacteria 2690
32 Ga0207658_10003816 3300025986 Bacteria 10609
33 Ga0207648_10136730 3300026089 Bacteria 2159
34 Ga0207675_100015011 3300026118 Bacteria 7228
35 Ga0207683_10009920 3300026121 Bacteria 8122
36 Ga0207683_10134938 3300026121 Bacteria 2221
37 Ga0207698_10223133 3300026142 Bacteria 1705
38 Ga0209813_10006366 3300027866 Bacteria 2915
39 Ga0268264_10000269 3300028381 Bacteria 91321
40 Ga0307411_10142401 3300032005 Bacteria 1770
41 Ga0395900_0357259 3300037418 Bacteria 1433
42 Ga0395898_0179751 3300037466 Bacteria 2022
43 Ga0395901_0147630 3300038443 Bacteria 2471
44 Ga0439461_0010638 3300041410 Bacteria 1693
45 Ga0439431_0002230 3300041997 Bacteria 4276
46 Ga0439446_0026626 3300042156 Bacteria 1657
47 Ga0439434_0003021 3300042435 Bacteria 4931
48 Ga0466965_0094219 3300044683 Bacteria 1526
49 Ga0466961_0074746 3300044693 Bacteria 2149
50 Ga0466963_0024387 3300044694 Bacteria 3851
51 Ga0466963_0182440 3300044694 Bacteria 1465
52 Ga0466964_0005345 3300044706 Bacteria 4770
53 Ga0466968_0057002 3300044735 Bacteria 1679
54 Ga0466970_0010029 3300044765 Bacteria 4798
55 Ga0466970_0021801 3300044765 Bacteria 3340
56 Ga0466970_0027860 3300044765 Bacteria 2966
57 Ga0466970_0030366 3300044765 Bacteria 2849
58 Ga0466970_0038914 3300044765 Bacteria 2524
59 Ga0466957_0004310 3300044842 Bacteria 7897
60 Ga0466960_0001421 3300044901 Bacteria 8714
61 Ga0466960_0036681 3300044901 Bacteria 2297
62 Ga0466960_0064001 3300044901 Bacteria 1812
63 Ga0466960_0102155 3300044901 Bacteria 1478
64 Ga0466967_0003294 3300045976 Bacteria 10478
65 Ga0466967_0149759 3300045976 Bacteria 2180
66 Ga0466967_0327576 3300045976 Bacteria 1478
67 Ga0496101_0044652 3300048904 Bacteria 3171
68 Ga0496102_0017593 3300048905 Bacteria 6263
69 Ga0496106_0119462 3300048909 Bacteria 2059
70 Ga0496107_0074950 3300048910 Bacteria 2462
71 Ga0496107_0156676 3300048910 Bacteria 1686
72 Ga0496108_0020596 3300048911 Bacteria 5420
73 Ga0496108_0114906 3300048911 Bacteria 2305
74 Ga0496109_0044610 3300048912 Bacteria 4022
75 Ga0496109_0103997 3300048912 Bacteria 2636
76 Ga0496110_0318444 3300048913 Bacteria 1417
77 Ga0496111_0071885 3300048914 Bacteria 2518
78 Ga0496113_0117803 3300048916 Bacteria 2074
79 Ga0496114_0031182 3300048917 Bacteria 4385
80 Ga0496114_0045588 3300048917 Bacteria 3643
81 Ga0496115_0005765 3300048918 Bacteria 9018
82 Ga0496115_0085393 3300048918 Bacteria 2574
83 Ga0501031_0034385 3300049568 Bacteria 3307
84 Ga0501031_0090729 3300049568 Bacteria 1993
85 Ga0501032_0017210 3300049569 Bacteria 5077
86 Ga0501032_0028068 3300049569 Bacteria 3867
87 Ga0501034_0030984 3300049571 Bacteria 5435
88 Ga0501034_0124337 3300049571 Bacteria 2565
89 Ga0501036_0001452 3300049572 Bacteria 18223
90 Ga0501036_0043963 3300049572 Bacteria 3783
91 Ga0501036_0057541 3300049572 Bacteria 3293
92 Ga0501037_0005676 3300049573 Bacteria 9100
93 Ga0501037_0132574 3300049573 Bacteria 1786
94 Ga0501038_0011773 3300049574 Bacteria 7980
95 Ga0501038_0028603 3300049574 Bacteria 4951
96 Ga0501038_0041263 3300049574 Bacteria 4025
97 Ga0501039_0006565 3300049575 Bacteria 8832
98 Ga0501039_0081612 3300049575 Bacteria 2517
99 Ga0501039_0085669 3300049575 Bacteria 2454
100 Ga0501040_0005487 3300049576 Bacteria 8208
101 Ga0501040_0167363 3300049576 Bacteria 1556
102 Ga0501042_0013337 3300049578 Bacteria 5589
103 Ga0501042_0028851 3300049578 Bacteria 3913
104 Ga0501042_0332571 3300049578 Bacteria 1098
105 Ga0501043_0006754 3300049579 Bacteria 9162
106 Ga0501043_0061517 3300049579 Bacteria 2949
107 Ga0501046_0000602 3300049580 Bacteria 35284
108 Ga0501046_0017113 3300049580 Bacteria 6057
109 Ga0501047_0067896 3300049581 Bacteria 3434
110 Ga0501048_0007683 3300049582 Bacteria 8172
111 Ga0501048_0231039 3300049582 Bacteria 1312
112 Ga0501067_0090729 3300049583 Bacteria 1696
113 Ga0501068_0005175 3300049584 Bacteria 7115
114 Ga0501068_0006462 3300049584 Bacteria 6465
115 Ga0501068_0030085 3300049584 Bacteria 3219
116 Ga0501069_0046332 3300049585 Bacteria 2412
117 Ga0501069_0052256 3300049585 Bacteria 2275
118 Ga0501069_0056977 3300049585 Bacteria 2178
119 Ga0501070_0042796 3300049586 Bacteria 3771
120 Ga0501070_0052839 3300049586 Bacteria 3372
121 Ga0501070_0219010 3300049586 Bacteria 1561
122 Ga0501071_0010848 3300049587 Bacteria 6113
123 Ga0501071_0027506 3300049587 Bacteria 4001
124 Ga0501071_0160319 3300049587 Bacteria 1681
125 Ga0501072_0016153 3300049588 Bacteria 5726
126 Ga0501072_0158270 3300049588 Bacteria 1807
127 Ga0501073_0000338 3300049589 Bacteria 31568
128 Ga0501073_0021238 3300049589 Bacteria 4680
129 Ga0501073_0055128 3300049589 Bacteria 2782
130 Ga0501074_0000353 3300049590 Bacteria 26897
131 Ga0501074_0086557 3300049590 Bacteria 2245
132 Ga0501077_0005224 3300049593 Bacteria 7892
133 Ga0501079_0014905 3300049741 Bacteria 5926
134 Ga0501079_0016303 3300049741 Bacteria 5678
135 Ga0501080_0000231 3300049742 Bacteria 42074
136 Ga0501080_0073662 3300049742 Bacteria 3177
137 Ga0501035_0003880 3300049822 Bacteria 14266
138 Ga0501044_0052611 3300049823 Bacteria 4195
139 Ga0501044_0057540 3300049823 Bacteria 3989
140 Ga0501044_0353023 3300049823 Bacteria 1390
141 Ga0501045_0024828 3300049824 Bacteria 4305
142 Ga0501045_0116721 3300049824 Bacteria 1981
143 Ga0501045_0225751 3300049824 Bacteria 1394
144 nmdc:mga00v17_135073_c1 3300050491 Bacteria 1579
145 nmdc:mga00v17_20313_c1 3300050491 Bacteria 3803
146 nmdc:mga0yw44_180006_c1 3300050492 Bacteria 1391
147 nmdc:mga0yw44_21146_c1 3300050492 Bacteria 3625
148 nmdc:mga0yw44_27803_c1 3300050492 Bacteria 3245
149 nmdc:mga0yw44_4541_c1 3300050492 Bacteria 6390
150 nmdc:mga04h51_1455_c1 3300050495 Bacteria 5480
151 nmdc:mga04h51_14853_c1 3300050495 Bacteria 2233
152 Ga0500644_0000345 3300053088 Bacteria 23414
153 Ga0500593_000544 3300053117 Bacteria 14618
154 Ga0500573_0003117 3300053140 Bacteria 8498
155 Ga0501084_0016860 3300054114 Bacteria 6069
156 Ga0501082_0018201 3300060353 Bacteria 6049
157 Ga0501082_0019943 3300060353 Bacteria 5777
158 Ga0530510_0160667 3300061734 Bacteria 1662
159 2643889215 2643221576 Bacteria 5214352
160 2643958270 2643221590 Bacteria 5214697
161 2644036439 2643221604 Bacteria 5014917
162 2644099125 2643221617 Bacteria 5139111
163 2644115006 2643221620 Bacteria 5134593
164 2644535087 2643221696 Bacteria 5431823
165 2738867826 2738541305 Bacteria 4910150
166 2774396774 2773857762 Bacteria 5971770
167 2809198421 2808606439 Bacteria 5952208
168 2812332151 2811994874 Bacteria 5367947
169 2812349625 2811994878 Bacteria 5992952
170 2855390710 2855386786 Bacteria 4752232
171 2857482290 2857481737 Bacteria 4761446
172 2891969476 2891968417 Bacteria 5821697
173 Ga0075368_10002632
174 JGI24739J22299_10009871
175 Ga0070683_100121042
176 Ga0070668_100101704
177 Ga0070667_100056657
178 Ga0070681_10122071
179 Ga0070679_100005548
180 Ga0068870_10064106
181 Ga0068860_100000301
182 Ga0075365_10008224
183 Ga0075365_10038815
184 Ga0075365_10059322
185 Ga0075368_10003251
186 Ga0075363_100013287
187 Ga0075363_100016597
188 Ga0075363_100025809
189 Ga0075363_100026051
190 Ga0075364_10011912
191 Ga0075364_10068235
192 Ga0075364_10068864
193 Ga0075362_10030507
194 Ga0075367_10080853
195 Ga0075370_10018083
196 Ga0075370_10071831
197 Ga0111539_10041684
198 Ga0163161_10006142
199 Ga0207647_10035062
200 Ga0207652_10004423
201 Ga0207664_10061310
202 Ga0207661_10217831
203 Ga0207668_10058759
204 Ga0207658_10003816
205 Ga0207648_10136730
206 Ga0207675_100015011
207 Ga0207683_10009920
208 Ga0207683_10134938
209 Ga0207698_10223133
210 Ga0209813_10006366
211 Ga0268264_10000269
212 Ga0307411_10142401
213 Ga0395900_0357259
214 Ga0395898_0179751
215 Ga0395901_0147630
216 Ga0439461_0010638
217 Ga0439431_0002230
218 Ga0439446_0026626
219 Ga0439434_0003021
220 Ga0466965_0094219
221 Ga0466961_0074746
222 Ga0466963_0024387
223 Ga0466963_0182440
224 Ga0466964_0005345
225 Ga0466968_0057002
226 Ga0466970_0010029
227 Ga0466970_0021801
228 Ga0466970_0027860
229 Ga0466970_0030366
230 Ga0466970_0038914
231 Ga0466957_0004310
232 Ga0466960_0001421
233 Ga0466960_0036681
234 Ga0466960_0064001
235 Ga0466960_0102155
236 Ga0466967_0003294
237 Ga0466967_0149759
238 Ga0466967_0327576
239 Ga0496101_0044652
240 Ga0496102_0017593
241 Ga0496106_0119462
242 Ga0496107_0074950
243 Ga0496107_0156676
244 Ga0496108_0020596
245 Ga0496108_0114906
246 Ga0496109_0044610
247 Ga0496109_0103997
248 Ga0496110_0318444
249 Ga0496111_0071885
250 Ga0496113_0117803
251 Ga0496114_0031182
252 Ga0496114_0045588
253 Ga0496115_0005765
254 Ga0496115_0085393
255 Ga0501031_0034385
256 Ga0501031_0090729
257 Ga0501032_0017210
258 Ga0501032_0028068
259 Ga0501034_0030984
260 Ga0501034_0124337
261 Ga0501036_0001452
262 Ga0501036_0043963
263 Ga0501036_0057541
264 Ga0501037_0005676
265 Ga0501037_0132574
266 Ga0501038_0011773
267 Ga0501038_0028603
268 Ga0501038_0041263
269 Ga0501039_0006565
270 Ga0501039_0081612
271 Ga0501039_0085669
272 Ga0501040_0005487
273 Ga0501040_0167363
274 Ga0501042_0013337
275 Ga0501042_0028851
276 Ga0501042_0332571
277 Ga0501043_0006754
278 Ga0501043_0061517
279 Ga0501046_0000602
280 Ga0501046_0017113
281 Ga0501047_0067896
282 Ga0501048_0007683
283 Ga0501048_0231039
284 Ga0501067_0090729
285 Ga0501068_0005175
286 Ga0501068_0006462
287 Ga0501068_0030085
288 Ga0501069_0046332
289 Ga0501069_0052256
290 Ga0501069_0056977
291 Ga0501070_0042796
292 Ga0501070_0052839
293 Ga0501070_0219010
294 Ga0501071_0010848
295 Ga0501071_0027506
296 Ga0501071_0160319
297 Ga0501072_0016153
298 Ga0501072_0158270
299 Ga0501073_0000338
300 Ga0501073_0021238
301 Ga0501073_0055128
302 Ga0501074_0000353
303 Ga0501074_0086557
304 Ga0501077_0005224
305 Ga0501079_0014905
306 Ga0501079_0016303
307 Ga0501080_0000231
308 Ga0501080_0073662
309 Ga0501035_0003880
310 Ga0501044_0052611
311 Ga0501044_0057540
312 Ga0501044_0353023
313 Ga0501045_0024828
314 Ga0501045_0116721
315 Ga0501045_0225751
316 nmdc:mga00v17_135073_c1
317 nmdc:mga00v17_20313_c1
318 nmdc:mga0yw44_180006_c1
319 nmdc:mga0yw44_21146_c1
320 nmdc:mga0yw44_27803_c1
321 nmdc:mga0yw44_4541_c1
322 nmdc:mga04h51_1455_c1
323 nmdc:mga04h51_14853_c1
324 Ga0500644_0000345
325 Ga0500593_000544
326 Ga0500573_0003117
327 Ga0501084_0016860
328 Ga0501082_0018201
329 Ga0501082_0019943
330 Ga0530510_0160667
331 2643889215
332 2643958270
333 2644036439
334 2644099125
335 2644115006
336 2644535087
337 2738867826
338 2774396774
339 2809198421
340 2812332151
341 2812349625
342 2855390710
343 2857482290
344 2891969476

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00275

EPSP_synthase

EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

23

431

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o15-assembly1.cif.gz_A mycobacterium tuberculosis epsp synthase after partial products withdrawal 0.9023 4 428
7tm4-assembly1.cif.gz_A crystal structure of apo 3-phosphoshikimate 1-carboxyvinyltransferase from klebsiella pneumoniae 0.9004 10 428
2o15-assembly1.cif.gz_A mycobacterium tuberculosis epsp synthase after partial products withdrawal 0.9003 4 428
7tm4-assembly1.cif.gz_A crystal structure of apo 3-phosphoshikimate 1-carboxyvinyltransferase from klebsiella pneumoniae 0.8845 10 428
7tbu-assembly2.cif.gz_B crystal structure of the 5-enolpyruvate-shikimate-3-phosphate synthase (epsps) domain of aro1 from candida albicans in complex with shikimate-3-phosphate 0.8817 3 399
ID Description Score Start End Superfamily
af_P9WPY5_236_421_1.20.200.10 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.9718 242 424 1.20.200.10
2o0eA01 Alpha Beta;Alpha-beta prism;UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain;Enolpyruvate transferase domain 0.968 245 428 3.65.10.10
af_P9WPY5_236_421_1.20.200.10 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.9514 242 424 1.20.200.10
af_Q57925_221_429_3.65.10.10 Alpha Beta;Alpha-beta prism;UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain;Enolpyruvate transferase domain 0.9389 233 428 3.65.10.10
1g6sA01 Alpha Beta;Alpha-beta prism;UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain;Enolpyruvate transferase domain 0.9291 245 428 3.65.10.10
ID Description Score Start End GO Terms
AF-A0A0F7FX65-F1-model_v4 3-phosphoshikimate 1-carboxyvinyltransferase 0.9875 264 423 GO:0003866
GO:0009423
AF-A0A7J0CZ36-F1-model_v4 Enolpyruvate transferase domain-containing protein 0.9842 259 426 GO:0003866
GO:0009423
AF-A0A2G4G6L7-F1-model_v4 3-phosphoshikimate 1-carboxyvinyltransferase 0.9807 305 428 GO:0003866
GO:0009423
AF-A0A6I3ACM6-F1-model_v4 3-phosphoshikimate 1-carboxyvinyltransferase 0.9789 306 428 GO:0003866
GO:0009423
AF-A0A7K1F4X8-F1-model_v4 3-phosphoshikimate 1-carboxyvinyltransferase 0.9759 289 426 GO:0003866
GO:0009423

Map