F259442

General Info

Members Datasets Scaffolds Average Seq Length
171 141 342 333

Family's Representative Sequence

Representative Sequence 3300048903|Ga0496100_0065139|Ga0496100_0065139_1144_2286
Length 380
Sequence MPNRLFTTWAADISQHATWPTRPPAIRAWQRPEQANEMNPVAPIVNVQRLTVDFGTGAKTVRAVAGVDLTLAKGETVALLGESGSGKSVTLRALMRLHPKSARIDGSIVVDGHDVLEMPARALARYRGGVVSMVFQDPGLAFDPVYRIGDQIAEAVVRHMGTSLRAGRARALELFERVRIPSPERRLDNYPHEMSGGMRQRAMIALALACGPKVLLADEPTTALDATVQIQVLLLLRELQHELGLAVIFVTHDIGVAVEVADRIAVMYGGRIVEMGSCAGVIRAPAHPYTQGLLASRAGHSVAKGGRLVAIPGSPPDLANLPPGCAFAPRCSRAIDSCRASVPDPVTIEPGHFACCVRAQAPAFSCVRADGAALASGAVG

Samples

Sample ID Description Type Environment
1 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
20 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
26 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
44 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
45 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
47 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
68 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
69 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
71 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
72 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
73 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
74 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
75 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
76 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
77 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
78 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
79 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
80 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
81 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
82 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
83 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
84 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
87 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
88 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
89 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
90 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
91 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
92 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
93 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
94 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
95 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
98 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
99 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
102 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
103 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
104 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
105 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
106 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
107 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
108 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
109 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
113 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
114 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
115 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
116 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
117 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
118 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
119 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
120 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
121 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
122 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
123 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
124 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
125 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
126 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
127 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
128 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
129 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
130 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
131 2841911363 Bosea caraganae RCAM04685 Isolate Nodule
132 2841917233 Bosea caraganae RCAM04680 Isolate Nodule
133 2842694124 Methylopila sp. R-72369 Isolate Unclassified
134 2842733646 Variovorax sp. R-72446 Isolate Unclassified
135 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
136 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
137 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
138 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
139 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
140 2922386360 Bradyrhizobium archetypum WSM 1744 Isolate Nodule
141 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.81
Metatranscriptomes 0
Isolates 8.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.88
Nodule 2.34
Rhizoplane 6.43
Rhizosphere 66.08
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496100_0065139 3300048903 Bacteria 2413
2 Ga0070690_100036577 3300005330 Bacteria 3086
3 Ga0070677_10001043 3300005333 Bacteria 8940
4 Ga0068869_100184961 3300005334 Bacteria 1635
5 Ga0070669_100014828 3300005353 Bacteria 5550
6 Ga0070669_100295026 3300005353 Bacteria 1303
7 Ga0070671_100331404 3300005355 Bacteria 1297
8 Ga0070674_100003533 3300005356 Bacteria 8779
9 Ga0070667_100072434 3300005367 Bacteria 2936
10 Ga0070714_100013583 3300005435 Bacteria 6527
11 Ga0070713_100001260 3300005436 Bacteria 16183
12 Ga0070710_10001251 3300005437 Bacteria 12059
13 Ga0070711_100001495 3300005439 Bacteria 12838
14 Ga0070662_100178970 3300005457 Bacteria 1670
15 Ga0068857_100061421 3300005577 Bacteria 3338
16 Ga0068857_100135372 3300005577 Bacteria 2224
17 Ga0068864_100078102 3300005618 Bacteria 2896
18 Ga0068863_100125864 3300005841 Bacteria 2445
19 Ga0068858_100184841 3300005842 Bacteria 1969
20 Ga0081455_10001267 3300005937 Bacteria 31568
21 Ga0081538_10002323 3300005981 Bacteria 18774
22 Ga0081540_1000002 3300005983 Bacteria 251149
23 Ga0081540_1001188 3300005983 Bacteria 22800
24 Ga0070717_10032567 3300006028 Bacteria 4201
25 Ga0070717_10405816 3300006028 Bacteria 1225
26 Ga0075365_10020136 3300006038 Bacteria 4131
27 Ga0075365_10034064 3300006038 Bacteria 3287
28 Ga0075363_100021163 3300006048 Bacteria 3272
29 Ga0075363_100023096 3300006048 Bacteria 3149
30 Ga0075363_100036763 3300006048 Bacteria 2570
31 Ga0075364_10027784 3300006051 Bacteria 3617
32 Ga0075364_10058545 3300006051 Bacteria 2525
33 Ga0070715_10006509 3300006163 Bacteria 3975
34 Ga0070716_100031441 3300006173 Bacteria 2887
35 Ga0070712_100000463 3300006175 Bacteria 23326
36 Ga0075370_10061710 3300006353 Bacteria 2135
37 Ga0075370_10075871 3300006353 Bacteria 1927
38 Ga0075428_100012249 3300006844 Bacteria 9536
39 Ga0075428_100023006 3300006844 Bacteria 6898
40 Ga0075430_100014404 3300006846 Bacteria 6738
41 Ga0075430_100059136 3300006846 Bacteria 3222
42 Ga0075430_100262249 3300006846 Bacteria 1431
43 Ga0075431_100000481 3300006847 Bacteria 33062
44 Ga0075431_100000596 3300006847 Bacteria 30494
45 Ga0075431_100007502 3300006847 Bacteria 10858
46 Ga0075434_100499034 3300006871 Bacteria 1238
47 Ga0075429_100034941 3300006880 Bacteria 4369
48 Ga0105240_10028112 3300009093 Bacteria 7352
49 Ga0111539_10002444 3300009094 Bacteria 24696
50 Ga0105245_10511100 3300009098 Bacteria 1219
51 Ga0114129_10001244 3300009147 Bacteria 33939
52 Ga0105242_10299954 3300009176 Bacteria 1466
53 Ga0171462_1010 3300013250 Bacteria 310590
54 Ga0157378_10428384 3300013297 Bacteria 1309
55 Ga0163162_10614952 3300013306 Bacteria 1212
56 Ga0157380_10019113 3300014326 Bacteria 5103
57 Ga0182006_1001258 3300015261 Bacteria 15687
58 Ga0209233_1000561 3300025261 Bacteria 19886
59 Ga0209455_1001937 3300025272 Bacteria 8554
60 Ga0209758_1000176 3300025297 Bacteria 143504
61 Ga0209256_1000954 3300025299 Bacteria 35032
62 Ga0207682_10002723 3300025893 Bacteria 7845
63 Ga0207692_10073767 3300025898 Bacteria 1806
64 Ga0207642_10130356 3300025899 Bacteria 1311
65 Ga0207688_10065021 3300025901 Bacteria 2060
66 Ga0207685_10039491 3300025905 Bacteria 1752
67 Ga0207645_10085592 3300025907 Bacteria 2024
68 Ga0207695_10066918 3300025913 Bacteria 3687
69 Ga0207671_10115258 3300025914 Bacteria 2049
70 Ga0207662_10006141 3300025918 Bacteria 6460
71 Ga0207681_10002481 3300025923 Bacteria 11710
72 Ga0207681_10151958 3300025923 Bacteria 1736
73 Ga0207681_10228855 3300025923 Bacteria 1442
74 Ga0207700_10050877 3300025928 Bacteria 3089
75 Ga0207686_10235546 3300025934 Bacteria 1330
76 Ga0207686_10307761 3300025934 Bacteria 1179
77 Ga0207709_10253957 3300025935 Bacteria 1286
78 Ga0207665_10025687 3300025939 Bacteria 3887
79 Ga0207691_10005476 3300025940 Bacteria 12258
80 Ga0207691_10095581 3300025940 Bacteria 2658
81 Ga0207641_10179008 3300026088 Bacteria 1941
82 Ga0207674_10027170 3300026116 Bacteria 6061
83 Ga0207674_10030736 3300026116 Bacteria 5645
84 Ga0207683_10059806 3300026121 Bacteria 3348
85 Ga0209179_1003558 3300027512 Bacteria 2259
86 Ga0209813_10043491 3300027866 Bacteria 1377
87 Ga0207428_10006807 3300027907 Bacteria 10483
88 Ga0268264_10351828 3300028381 Bacteria 1402
89 Ga0265318_10014731 3300028577 Bacteria 3274
90 Ga0265340_10018397 3300031247 Bacteria 3603
91 Ga0265339_10022304 3300031249 Bacteria 3669
92 Ga0265339_10046170 3300031249 Bacteria 2396
93 Ga0265316_10104455 3300031344 Bacteria 2150
94 Ga0307513_10043136 3300031456 Bacteria 4958
95 Ga0265313_10026059 3300031595 Bacteria 3087
96 Ga0307508_10000740 3300031616 Bacteria 38713
97 Ga0265342_10003084 3300031712 Bacteria 13926
98 Ga0265342_10032748 3300031712 Bacteria 3203
99 Ga0373927_0005522 3300035695 Bacteria 8709
100 Ga0436363_0751479 3300039450 Bacteria 2844
101 Ga0439453_0000584 3300041408 Bacteria 4106
102 Ga0439443_004061 3300042003 Bacteria 1885
103 Ga0439452_035751 3300042010 Bacteria 1194
104 Ga0439435_0000282 3300042436 Bacteria 7524
105 Ga0439460_0043141 3300042461 Bacteria 1331
106 Ga0466963_0096323 3300044694 Bacteria 2021
107 Ga0466967_0126931 3300045976 Bacteria 2364
108 Ga0495638_0018774 3300046460 Bacteria 4588
109 Ga0495638_0023829 3300046460 Bacteria 3998
110 Ga0495584_0000814 3300046491 Bacteria 20544
111 Ga0495654_0003829 3300046530 Bacteria 9092
112 Ga0495598_0049295 3300046537 Bacteria 1262
113 Ga0495656_0033485 3300046615 Bacteria 2098
114 Ga0495672_0045650 3300047320 Bacteria 2620
115 Ga0495685_053557 3300047447 Bacteria 1366
116 Ga0495684_0109330 3300047471 Bacteria 2088
117 Ga0496101_0102629 3300048904 Bacteria 2142
118 Ga0496102_0309280 3300048905 Bacteria 1489
119 Ga0496104_0015379 3300048907 Bacteria 6930
120 Ga0496105_0100101 3300048908 Bacteria 2393
121 Ga0496107_0164640 3300048910 Bacteria 1644
122 Ga0496109_0019192 3300048912 Bacteria 6022
123 Ga0496110_0125856 3300048913 Bacteria 2312
124 Ga0496112_0036672 3300048915 Bacteria 4783
125 Ga0496114_0422125 3300048917 Bacteria 1181
126 Ga0496115_0249473 3300048918 Bacteria 1462
127 nmdc:mga03n38_5920_c1 3300050490 Bacteria 4205
128 nmdc:mga00v17_121895_c1 3300050491 Bacteria 1661
129 nmdc:mga00v17_169826_c1 3300050491 Bacteria 1406
130 nmdc:mga0yw44_18992_c1 3300050492 Bacteria 3780
131 nmdc:mga0yw44_22256_c1 3300050492 Bacteria 3552
132 nmdc:mga0yw44_297169_c1 3300050492 Bacteria 1081
133 nmdc:mga0k408_137415_c1 3300050493 Bacteria 1452
134 nmdc:mga09592_11310_c2 3300050508 Bacteria 6507
135 nmdc:mga0qj67_103017_c1 3300050509 Bacteria 2302
136 nmdc:mga0qj67_205559_c1 3300050509 Bacteria 1599
137 nmdc:mga0qj67_32438_c1 3300050509 Bacteria 4073
138 nmdc:mga06r32_223569_c1 3300050510 Bacteria 1871
139 nmdc:mga06r32_241_c1 3300050510 Bacteria 44852
140 nmdc:mga06r32_445_c1 3300050510 Bacteria 35037
141 nmdc:mga08y16_427_c1 3300050511 Bacteria 38825
142 nmdc:mga0n895_341390_c1 3300050512 Bacteria 1517
143 nmdc:mga0sz30_96723_c1 3300050516 Bacteria 1288
144 Ga0500610_0078422 3300053079 Bacteria 1721
145 Ga0495655_0015647 3300053083 Bacteria 1617
146 Ga0500644_0000703 3300053088 Bacteria 11861
147 Ga0500651_0057151 3300053093 Bacteria 2442
148 Ga0500641_0018113 3300053096 Bacteria 2644
149 Ga0500593_015611 3300053117 Bacteria 3278
150 Ga0500652_046233 3300053131 Bacteria 1766
151 Ga0500559_0043378 3300053136 Bacteria 1964
152 Ga0500588_0041742 3300053146 Bacteria 1386
153 Ga0500616_0000002 3300053153 Bacteria 1611257
154 Ga0500616_0023306 3300053153 Bacteria 3449
155 Ga0500636_0161716 3300053177 Bacteria 1219
156 Ga0500645_000087 3300053730 Bacteria 74431
157 Ga0501082_0200606 3300060353 Bacteria 1736
158 2513593747 2513237087 Bacteria 5817514
159 2521560634 2521172590 Bacteria 5047645
160 2574430733 2574179768 Bacteria 4907129
161 2841911777 2841911363 Bacteria 6173697
162 2841917266 2841917233 Bacteria 6173500
163 2842695477 2842694124 Bacteria 4063419
164 2842737457 2842733646 Bacteria 5716726
165 2889792124 2889790730 Bacteria 5689708
166 2904534836 2904530477 Bacteria 5876334
167 2904605064 2904601388 Bacteria 5884906
168 2917699574 2917699015 Bacteria 7043791
169 2919083296 2919079590 Bacteria 5946433
170 2922389293 2922386360 Bacteria 7017218
171 8054563937 8054563764 Bacteria 5592885
172 Ga0496100_0065139
173 Ga0070690_100036577
174 Ga0070677_10001043
175 Ga0068869_100184961
176 Ga0070669_100014828
177 Ga0070669_100295026
178 Ga0070671_100331404
179 Ga0070674_100003533
180 Ga0070667_100072434
181 Ga0070714_100013583
182 Ga0070713_100001260
183 Ga0070710_10001251
184 Ga0070711_100001495
185 Ga0070662_100178970
186 Ga0068857_100061421
187 Ga0068857_100135372
188 Ga0068864_100078102
189 Ga0068863_100125864
190 Ga0068858_100184841
191 Ga0081455_10001267
192 Ga0081538_10002323
193 Ga0081540_1000002
194 Ga0081540_1001188
195 Ga0070717_10032567
196 Ga0070717_10405816
197 Ga0075365_10020136
198 Ga0075365_10034064
199 Ga0075363_100021163
200 Ga0075363_100023096
201 Ga0075363_100036763
202 Ga0075364_10027784
203 Ga0075364_10058545
204 Ga0070715_10006509
205 Ga0070716_100031441
206 Ga0070712_100000463
207 Ga0075370_10061710
208 Ga0075370_10075871
209 Ga0075428_100012249
210 Ga0075428_100023006
211 Ga0075430_100014404
212 Ga0075430_100059136
213 Ga0075430_100262249
214 Ga0075431_100000481
215 Ga0075431_100000596
216 Ga0075431_100007502
217 Ga0075434_100499034
218 Ga0075429_100034941
219 Ga0105240_10028112
220 Ga0111539_10002444
221 Ga0105245_10511100
222 Ga0114129_10001244
223 Ga0105242_10299954
224 Ga0171462_1010
225 Ga0157378_10428384
226 Ga0163162_10614952
227 Ga0157380_10019113
228 Ga0182006_1001258
229 Ga0209233_1000561
230 Ga0209455_1001937
231 Ga0209758_1000176
232 Ga0209256_1000954
233 Ga0207682_10002723
234 Ga0207692_10073767
235 Ga0207642_10130356
236 Ga0207688_10065021
237 Ga0207685_10039491
238 Ga0207645_10085592
239 Ga0207695_10066918
240 Ga0207671_10115258
241 Ga0207662_10006141
242 Ga0207681_10002481
243 Ga0207681_10151958
244 Ga0207681_10228855
245 Ga0207700_10050877
246 Ga0207686_10235546
247 Ga0207686_10307761
248 Ga0207709_10253957
249 Ga0207665_10025687
250 Ga0207691_10005476
251 Ga0207691_10095581
252 Ga0207641_10179008
253 Ga0207674_10027170
254 Ga0207674_10030736
255 Ga0207683_10059806
256 Ga0209179_1003558
257 Ga0209813_10043491
258 Ga0207428_10006807
259 Ga0268264_10351828
260 Ga0265318_10014731
261 Ga0265340_10018397
262 Ga0265339_10022304
263 Ga0265339_10046170
264 Ga0265316_10104455
265 Ga0307513_10043136
266 Ga0265313_10026059
267 Ga0307508_10000740
268 Ga0265342_10003084
269 Ga0265342_10032748
270 Ga0373927_0005522
271 Ga0436363_0751479
272 Ga0439453_0000584
273 Ga0439443_004061
274 Ga0439452_035751
275 Ga0439435_0000282
276 Ga0439460_0043141
277 Ga0466963_0096323
278 Ga0466967_0126931
279 Ga0495638_0018774
280 Ga0495638_0023829
281 Ga0495584_0000814
282 Ga0495654_0003829
283 Ga0495598_0049295
284 Ga0495656_0033485
285 Ga0495672_0045650
286 Ga0495685_053557
287 Ga0495684_0109330
288 Ga0496101_0102629
289 Ga0496102_0309280
290 Ga0496104_0015379
291 Ga0496105_0100101
292 Ga0496107_0164640
293 Ga0496109_0019192
294 Ga0496110_0125856
295 Ga0496112_0036672
296 Ga0496114_0422125
297 Ga0496115_0249473
298 nmdc:mga03n38_5920_c1
299 nmdc:mga00v17_121895_c1
300 nmdc:mga00v17_169826_c1
301 nmdc:mga0yw44_18992_c1
302 nmdc:mga0yw44_22256_c1
303 nmdc:mga0yw44_297169_c1
304 nmdc:mga0k408_137415_c1
305 nmdc:mga09592_11310_c2
306 nmdc:mga0qj67_103017_c1
307 nmdc:mga0qj67_205559_c1
308 nmdc:mga0qj67_32438_c1
309 nmdc:mga06r32_223569_c1
310 nmdc:mga06r32_241_c1
311 nmdc:mga06r32_445_c1
312 nmdc:mga08y16_427_c1
313 nmdc:mga0n895_341390_c1
314 nmdc:mga0sz30_96723_c1
315 Ga0500610_0078422
316 Ga0495655_0015647
317 Ga0500644_0000703
318 Ga0500651_0057151
319 Ga0500641_0018113
320 Ga0500593_015611
321 Ga0500652_046233
322 Ga0500559_0043378
323 Ga0500588_0041742
324 Ga0500616_0000002
325 Ga0500616_0023306
326 Ga0500636_0161716
327 Ga0500645_000087
328 Ga0501082_0200606
329 2513593747
330 2521560634
331 2574430733
332 2841911777
333 2841917266
334 2842695477
335 2842737457
336 2889792124
337 2904534836
338 2904605064
339 2917699574
340 2919083296
341 2922389293
342 8054563937

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08352

oligo_HPY

Oligopeptide/dipeptide transporter, C-terminal region

273

338

0.98

PF00005

ABC_tran

ABC transporter

64

222

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
7z17-assembly1.cif.gz_J e. coli c-p lyase bound to a phnk abc dimer in an open conformation 0.94 4 259
4fwi-assembly1.cif.gz_B crystal structure of the nucleotide-binding domain of a dipeptide abc transporter 0.938 3 316
7z19-assembly1.cif.gz_I e. coli c-p lyase bound to a single phnk abc domain 0.9358 4 259
2pcj-assembly1.cif.gz_B crystal structure of abc transporter (aq_297) from aquifex aeolicus vf5 0.9353 3 238
7z17-assembly1.cif.gz_J e. coli c-p lyase bound to a phnk abc dimer in an open conformation 0.9327 4 259
ID Description Score Start End Superfamily
af_Q2FZR5_3_331_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9701 4 316 3.40.50.300
af_P9WQJ5_2_332_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9644 3 320 3.40.50.300
af_Q2G1F8_1_274_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9563 2 267 3.40.50.300
af_Q2FZR1_3_327_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9532 4 321 3.40.50.300
af_P77268_3_327_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.952 4 316 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A853I3Z0-F1-model_v4 deleted 0.978 4 185
AF-A0A7X9KIM3-F1-model_v4 ABC transporter ATP-binding protein 0.9779 3 165 GO:0005524
GO:0005886
GO:0016887
AF-A0A6G2QKZ1-F1-model_v4 ATP-binding cassette domain-containing protein 0.9766 4 255 GO:0005524
GO:0016887
AF-A0A3D0ZRT3-F1-model_v4 ABC-type dipeptide transporter (EC 7.4.2.9) 0.9747 4 320 GO:0005524
GO:0005886
GO:0015833
GO:0016887
AF-A0A6J4JAE9-F1-model_v4 Oligopeptide transport ATP-binding protein OppD 0.9715 1 316 GO:0005524
GO:0005886
GO:0015833
GO:0016887

Map