F259365

General Info

Members Datasets Scaffolds Average Seq Length
171 109 164 390

Family's Representative Sequence

Representative Sequence 3300046522|Ga0495643_0000551|Ga0495643_0000551_31266_32480
Length 404
Sequence MMLRHLFKLIWKRKSRNMMLSLEILLAFVIVFGIVAFSLRSRQLYELPVGFDYRPMWSVMINTRDDKGMGADPAVYETIRQSLRALPEVDDVGFSGFPVYESSRMTSDFALADGSRPLNSNMIIVNDEFPAVAGMKLAEGHWFSKADDGAEITPVVINRRLADALFPGKSAVGQVFSEGHHSDGPKNAPEMFRVSGVVEEFRNQGEYMAPVNMMLVRLGQAADKYQLNVIAIKVKPGTPRGFETKLNSQLKLLHSDWSYTITPVADARASMLKLQGVPLMILSVIAAFLLVMVAFGLFGVLWQNTTQRIPEIGLRRAVGADAGHIYRQIIAEQMLLSSGAIAIALLLLVQLPLTGVFGENLNWPVFLAAAALSAGVIYLLSLLCSLYPGWRAARLSPTQALHYE

Samples

Sample ID Description Type Environment
1 2738541297 Duganella sp. GV083 Isolate Unclassified
2 2738541357 Duganella sp. GV053 Isolate Unclassified
3 2738543003 Duganella sp. GV066 Isolate Unclassified
4 2738543026 Duganella sp. GV089 Isolate Unclassified
5 2738543029 Duganella sp. GV039 Isolate Unclassified
6 2821131069 Duganella sp. 1224 Isolate Unclassified
7 2857564685 Duganella sp. R-74599 Isolate Unclassified
8 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
12 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
13 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
16 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
17 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
18 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
19 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
20 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
22 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
23 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
24 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
31 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
32 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
33 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
34 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
35 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
36 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
37 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
38 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
39 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
40 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
41 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
42 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
43 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
44 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
45 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
46 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
47 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
48 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
49 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
50 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
51 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
52 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
53 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
54 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
55 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
56 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
57 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
58 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
59 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
60 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
61 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
62 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
63 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
64 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
65 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
66 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
67 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
68 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
69 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
70 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
71 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
72 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
73 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
74 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
75 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
76 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
77 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
78 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
81 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
82 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
83 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
84 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
85 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
88 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
89 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
90 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
91 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
92 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
93 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
94 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
95 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
96 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
97 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
105 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
106 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
107 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
108 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
109 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.91
Metatranscriptomes 0
Isolates 4.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.02
Nodule 0
Rhizoplane 3.51
Rhizosphere 80.12
Stem 0
Stem Tuber 0
Unclassified 9.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1002754 3300002738 Bacteria 4254
2 rootH2_10238988 3300003320 Bacteria 1926
3 rootL2_10033965 3300003322 Bacteria 5871
4 rootL2_10074919 3300003322 Bacteria 4877
5 Ga0055529_1000241 3300003763 Bacteria 68092
6 Ga0055526_1000068 3300003771 Bacteria 98723
7 Ga0055526_1000089 3300003771 Bacteria 83426
8 Ga0070664_100054711 3300005564 Bacteria 3387
9 Ga0070664_100244797 3300005564 Bacteria 1611
10 Ga0068852_100082764 3300005616 Bacteria 2853
11 Ga0105241_10065897 3300009174 Bacteria 2800
12 Ga0105242_10018780 3300009176 Bacteria 5410
13 Ga0209437_104100 3300025233 Bacteria 2582
14 Ga0207425_1000716 3300025245 Bacteria 17850
15 Ga0209646_1000077 3300025246 Bacteria 208262
16 Ga0209455_1000169 3300025272 Bacteria 111454
17 Ga0209025_1003857 3300025294 Bacteria 13610
18 Ga0209564_1000072 3300025295 Bacteria 289331
19 Ga0209564_1000299 3300025295 Bacteria 99740
20 Ga0209758_1000483 3300025297 Bacteria 65467
21 Ga0207705_10013565 3300025909 Bacteria 5882
22 Ga0207654_10019191 3300025911 Bacteria 3604
23 Ga0207657_10008651 3300025919 Bacteria 10305
24 Ga0207687_10144190 3300025927 Bacteria 1810
25 Ga0207686_10009055 3300025934 Bacteria 5391
26 Ga0207679_10108226 3300025945 Bacteria 2188
27 Ga0316177_1200553 3300030731 Bacteria 3600
28 Ga0316182_1052054 3300030745 Bacteria 6538
29 Ga0265314_10009403 3300031711 Bacteria 8249
30 Ga0395899_0005315 3300037312 Bacteria 9998
31 Ga0395899_0059013 3300037312 Bacteria 2828
32 Ga0395900_0000973 3300037418 Bacteria 37255
33 Ga0395900_0022449 3300037418 Bacteria 6454
34 Ga0395900_0042891 3300037418 Bacteria 4660
35 Ga0395898_0032057 3300037466 Bacteria 5245
36 Ga0395898_0113033 3300037466 Bacteria 2602
37 Ga0395905_0048570 3300037471 Bacteria 3977
38 Ga0395905_0051036 3300037471 Bacteria 3874
39 Ga0395901_0000054 3300038443 Bacteria 160505
40 Ga0395901_0150812 3300038443 Bacteria 2443
41 Ga0395901_0177409 3300038443 Bacteria 2234
42 Ga0439448_0000467 3300042005 Bacteria 9372
43 Ga0466965_0045792 3300044683 Bacteria 2164
44 Ga0466966_0003428 3300044684 Bacteria 10461
45 Ga0466966_0235703 3300044684 Bacteria 1104
46 Ga0466964_0007226 3300044706 Bacteria 4150
47 Ga0466957_0000489 3300044842 Bacteria 19748
48 Ga0466959_0041591 3300045049 Bacteria 3392
49 Ga0466967_0007970 3300045976 Bacteria 7707
50 Ga0466967_0034907 3300045976 Bacteria 4274
51 Ga0495627_010975 3300046453 Bacteria 3267
52 Ga0495590_0000163 3300046457 Bacteria 39787
53 Ga0495638_0000098 3300046460 Bacteria 140656
54 Ga0495653_0000004 3300046463 Bacteria 376003
55 Ga0495653_0037308 3300046463 Bacteria 3819
56 Ga0495650_0000042 3300046471 Bacteria 357244
57 Ga0495650_0000135 3300046471 Bacteria 172251
58 Ga0495650_0000445 3300046471 Bacteria 66180
59 Ga0495650_0004195 3300046471 Bacteria 9991
60 Ga0495650_0018808 3300046471 Bacteria 3423
61 Ga0495650_0026052 3300046471 Bacteria 2727
62 Ga0495582_0011607 3300046473 Bacteria 4855
63 Ga0495605_0000042 3300046474 Bacteria 185225
64 Ga0495605_0010863 3300046474 Bacteria 5086
65 Ga0495639_0042357 3300046475 Bacteria 2053
66 Ga0495585_0004948 3300046492 Bacteria 8519
67 Ga0495585_0005270 3300046492 Bacteria 8175
68 Ga0495585_0028207 3300046492 Bacteria 3202
69 Ga0495594_0010069 3300046499 Bacteria 4897
70 Ga0495594_0016161 3300046499 Bacteria 3929
71 Ga0495607_0000317 3300046501 Bacteria 50197
72 Ga0495607_0016050 3300046501 Bacteria 4839
73 Ga0495583_0000472 3300046506 Bacteria 58906
74 Ga0495583_0029196 3300046506 Bacteria 2701
75 Ga0495606_0000175 3300046507 Bacteria 113577
76 Ga0495606_0000680 3300046507 Bacteria 53232
77 Ga0495606_0000957 3300046507 Bacteria 42388
78 Ga0495606_0001270 3300046507 Bacteria 34959
79 Ga0495606_0008857 3300046507 Bacteria 8624
80 Ga0495606_0017888 3300046507 Bacteria 5336
81 Ga0495610_0000010 3300046512 Bacteria 538821
82 Ga0495610_0012991 3300046512 Bacteria 4975
83 Ga0495610_0028079 3300046512 Bacteria 2981
84 Ga0495616_0000559 3300046513 Bacteria 28177
85 Ga0495630_0067515 3300046517 Bacteria 2688
86 Ga0495631_0013012 3300046518 Bacteria 4050
87 Ga0495631_0031598 3300046518 Bacteria 2393
88 Ga0495631_0036992 3300046518 Bacteria 2176
89 Ga0495637_0000114 3300046520 Bacteria 58485
90 Ga0495643_0000551 3300046522 Bacteria 46367
91 Ga0495643_0098872 3300046522 Bacteria 1497
92 Ga0495644_0010080 3300046523 Bacteria 3641
93 Ga0495648_0000169 3300046524 Bacteria 75523
94 Ga0495648_0000995 3300046524 Bacteria 29146
95 Ga0495648_0005293 3300046524 Bacteria 10769
96 Ga0495666_0006448 3300046526 Bacteria 5906
97 Ga0495642_0005744 3300046528 Bacteria 4759
98 Ga0495652_0003778 3300046529 Bacteria 14778
99 Ga0495654_0000002 3300046530 Bacteria 1021205
100 Ga0495654_0011009 3300046530 Bacteria 4912
101 Ga0495665_0012591 3300046531 Bacteria 4579
102 Ga0495586_0019375 3300046535 Bacteria 3620
103 Ga0495587_0042556 3300046536 Bacteria 2708
104 Ga0495609_0000009 3300046538 Bacteria 354860
105 Ga0495609_0001165 3300046538 Bacteria 18135
106 Ga0495597_0000266 3300046542 Bacteria 47830
107 Ga0495622_0000055 3300046557 Bacteria 102577
108 Ga0495622_0000263 3300046557 Bacteria 40099
109 Ga0495633_0000311 3300046558 Bacteria 55445
110 Ga0495633_0000781 3300046558 Bacteria 28470
111 Ga0495633_0020286 3300046558 Bacteria 3345
112 Ga0495668_0000288 3300046616 Bacteria 69253
113 Ga0495668_0000744 3300046616 Bacteria 38882
114 Ga0495668_0000853 3300046616 Bacteria 34412
115 Ga0495668_0006860 3300046616 Bacteria 7382
116 Ga0495611_0001504 3300046648 Bacteria 11522
117 Ga0495625_0000810 3300046660 Bacteria 43340
118 Ga0495625_0006574 3300046660 Bacteria 10316
119 Ga0495661_0000113 3300046665 Bacteria 96815
120 Ga0495661_0037587 3300046665 Bacteria 3021
121 Ga0495661_0056891 3300046665 Bacteria 2337
122 Ga0495588_0034871 3300046674 Bacteria 2547
123 Ga0495623_0014156 3300046679 Bacteria 5166
124 Ga0495670_0047868 3300046691 Bacteria 2138
125 Ga0495671_0000002 3300046692 Bacteria 1136189
126 Ga0495671_0020099 3300046692 Bacteria 3522
127 Ga0495671_0029241 3300046692 Bacteria 2831
128 Ga0495589_0000037 3300046794 Bacteria 150603
129 Ga0495660_0000448 3300046810 Bacteria 34404
130 Ga0495660_0000493 3300046810 Bacteria 32595
131 Ga0495660_0028411 3300046810 Bacteria 3160
132 Ga0495660_0074755 3300046810 Bacteria 1789
133 Ga0495604_0002836 3300047317 Bacteria 13909
134 Ga0495636_0077962 3300047318 Bacteria 1423
135 Ga0495683_0039870 3300047323 Bacteria 2373
136 Ga0495687_000168 3300047443 Bacteria 97267
137 Ga0495687_000215 3300047443 Bacteria 82752
138 Ga0495687_001842 3300047443 Bacteria 18563
139 Ga0495687_002225 3300047443 Bacteria 16017
140 Ga0495675_0010810 3300047444 Bacteria 5719
141 Ga0495677_0000011 3300047445 Bacteria 149837
142 Ga0495685_002214 3300047447 Bacteria 6051
143 Ga0495673_0000028 3300047469 Bacteria 473418
144 Ga0495673_0000207 3300047469 Bacteria 89423
145 Ga0495673_0000265 3300047469 Bacteria 72840
146 Ga0495686_0035451 3300047472 Bacteria 3207
147 Ga0495626_0000026 3300048091 Bacteria 207698
148 Ga0495626_0002492 3300048091 Bacteria 12718
149 Ga0495626_0045346 3300048091 Bacteria 2052
150 Ga0496101_0032130 3300048904 Bacteria 3693
151 Ga0496102_0000123 3300048905 Bacteria 110781
152 Ga0496102_0303948 3300048905 Bacteria 1503
153 Ga0496103_0009497 3300048906 Bacteria 5758
154 Ga0496103_0029941 3300048906 Bacteria 3310
155 Ga0496104_0259947 3300048907 Bacteria 1649
156 Ga0496116_0082766 3300048919 Bacteria 1984
157 Ga0496120_0072790 3300048923 Bacteria 1882
158 Ga0496123_0003808 3300048926 Bacteria 16484
159 Ga0496126_0081970 3300048929 Bacteria 2851
160 Ga0495678_000197 3300049459 Bacteria 70712
161 Ga0501249_000736 3300049679 Bacteria 7355
162 Ga0501269_000022 3300049766 Bacteria 53264
163 nmdc:mga03683_9914_c1 3300050489 Bacteria 3402
164 Ga0500586_000643 3300053145 Bacteria 7106

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044684 Ga0466966_0235703 Ga0466966_0235703_30_1043 337
2 3300047318 Ga0495636_0077962 Ga0495636_0077962_397_1410 337
3 3300046473 Ga0495582_0011607 Ga0495582_0011607_2344_3537 360
4 3300046499 Ga0495594_0010069 Ga0495594_0010069_2151_3344 360
5 3300046517 Ga0495630_0067515 Ga0495630_0067515_625_1818 360
6 3300046526 Ga0495666_0006448 Ga0495666_0006448_2248_3441 360
7 3300046529 Ga0495652_0003778 Ga0495652_0003778_6017_7210 360
8 3300046531 Ga0495665_0012591 Ga0495665_0012591_2323_3516 360
9 3300046535 Ga0495586_0019375 Ga0495586_0019375_1109_2302 360
10 3300046536 Ga0495587_0042556 Ga0495587_0042556_656_1849 360
11 3300046674 Ga0495588_0034871 Ga0495588_0034871_480_1673 360
12 3300046679 Ga0495623_0014156 Ga0495623_0014156_2036_3229 360
13 3300047317 Ga0495604_0002836 Ga0495604_0002836_9798_10991 360
14 3300047444 Ga0495675_0010810 Ga0495675_0010810_2142_3335 360
15 3300046453 Ga0495627_010975 Ga0495627_010975_469_1659 363
16 3300046492 Ga0495585_0004948 Ga0495585_0004948_6194_7384 363
17 3300046499 Ga0495594_0016161 Ga0495594_0016161_1201_2391 363
18 3300046518 Ga0495631_0013012 Ga0495631_0013012_1618_2808 363
19 3300046523 Ga0495644_0010080 Ga0495644_0010080_179_1369 363
20 3300046648 Ga0495611_0001504 Ga0495611_0001504_7526_8716 363
21 3300046665 Ga0495661_0056891 Ga0495661_0056891_401_1591 363
22 3300046691 Ga0495670_0047868 Ga0495670_0047868_483_1673 363
23 3300048091 Ga0495626_0002492 Ga0495626_0002492_3096_4286 363
24 3300046506 Ga0495583_0029196 Ga0495583_0029196_187_1377 364
25 3300046492 Ga0495585_0028207 Ga0495585_0028207_527_1726 367
26 3300046507 Ga0495606_0008857 Ga0495606_0008857_2221_3420 367
27 3300046518 Ga0495631_0031598 Ga0495631_0031598_1174_2373 367
28 3300046518 Ga0495631_0036992 Ga0495631_0036992_285_1484 367
29 3300046528 Ga0495642_0005744 Ga0495642_0005744_570_1769 367
30 3300046665 Ga0495661_0037587 Ga0495661_0037587_651_1850 367
31 3300046692 Ga0495671_0020099 Ga0495671_0020099_2265_3464 367
32 3300046463 Ga0495653_0037308 Ga0495653_0037308_476_1669 373
33 3300037418 Ga0395900_0000973 Ga0395900_0000973_2913_4109 374
34 3300038443 Ga0395901_0000054 Ga0395901_0000054_156196_157392 374
35 3300003322 rootL2_10074919 rootL2_100749193 377
36 3300046522 Ga0495643_0098872 Ga0495643_0098872_157_1359 377
37 3300046524 Ga0495648_0000169 Ga0495648_0000169_49386_50585 383
38 3300005616 Ga0068852_100082764 Ga0068852_1000827642 384
39 3300025909 Ga0207705_10013565 Ga0207705_100135656 384
40 3300009174 Ga0105241_10065897 Ga0105241_100658972 387
41 3300025911 Ga0207654_10019191 Ga0207654_100191913 387
42 3300046501 Ga0495607_0016050 Ga0495607_0016050_880_2076 387
43 3300046507 Ga0495606_0001270 Ga0495606_0001270_26884_28080 387
44 3300037312 Ga0395899_0059013 Ga0395899_0059013_1606_2802 389
45 3300037418 Ga0395900_0042891 Ga0395900_0042891_1322_2518 389
46 3300037466 Ga0395898_0113033 Ga0395898_0113033_85_1281 389
47 3300037471 Ga0395905_0048570 Ga0395905_0048570_268_1464 389
48 3300046810 Ga0495660_0074755 Ga0495660_0074755_298_1494 389
49 3300047443 Ga0495687_002225 Ga0495687_002225_1801_3000 389
50 3300048905 Ga0496102_0303948 Ga0496102_0303948_123_1328 390
51 3300048906 Ga0496103_0029941 Ga0496103_0029941_50_1255 390
52 iso_pu_bacteria 2738541297 2738830364 394
53 iso_pu_bacteria 2738541357 2739154160 394
54 iso_pu_bacteria 2738543003 2739196080 394
55 iso_pu_bacteria 2738543026 2739322556 394
56 iso_pu_bacteria 2738543029 2739340797 394
57 iso_pu_bacteria 2821131069 2821133450 394
58 iso_pu_bacteria 2857564685 2857570237 394
59 3300048091 Ga0495626_0000026 Ga0495626_0000026_104385_105575 396
60 3300003320 rootH2_10238988 rootH2_102389881 397
61 3300003322 rootL2_10033965 rootL2_100339653 397
62 3300003763 Ga0055529_1000241 Ga0055529_100024134 397
63 3300025272 Ga0209455_1000169 Ga0209455_100016929 397
64 3300031711 Ga0265314_10009403 Ga0265314_100094035 397
65 3300046471 Ga0495650_0000135 Ga0495650_0000135_109077_110270 397
66 3300046507 Ga0495606_0000957 Ga0495606_0000957_32704_33897 397
67 3300046538 Ga0495609_0001165 Ga0495609_0001165_4261_5466 397
68 3300046557 Ga0495622_0000055 Ga0495622_0000055_91121_92314 397
69 3300046558 Ga0495633_0000311 Ga0495633_0000311_29535_30728 397
70 3300046810 Ga0495660_0000448 Ga0495660_0000448_21735_22928 397
71 3300046810 Ga0495660_0000493 Ga0495660_0000493_11581_12786 397
72 3300049459 Ga0495678_000197 Ga0495678_000197_21718_22923 397
73 3300049679 Ga0501249_000736 Ga0501249_000736_2536_3729 397
74 3300049766 Ga0501269_000022 Ga0501269_000022_11295_12488 397
75 3300050489 nmdc:mga03683_9914_c1 nmdc:mga03683_9914_c1_1905_3098 397
76 3300003771 Ga0055526_1000089 Ga0055526_100008929 398
77 3300005564 Ga0070664_100054711 Ga0070664_1000547112 398
78 3300005564 Ga0070664_100244797 Ga0070664_1002447972 398
79 3300009176 Ga0105242_10018780 Ga0105242_100187804 398
80 3300025245 Ga0207425_1000716 Ga0207425_10007163 398
81 3300025294 Ga0209025_1003857 Ga0209025_100385714 398
82 3300025295 Ga0209564_1000299 Ga0209564_100029939 398
83 3300025297 Ga0209758_1000483 Ga0209758_100048335 398
84 3300025919 Ga0207657_10008651 Ga0207657_100086513 398
85 3300025927 Ga0207687_10144190 Ga0207687_101441902 398
86 3300025934 Ga0207686_10009055 Ga0207686_100090553 398
87 3300025945 Ga0207679_10108226 Ga0207679_101082261 398
88 3300037312 Ga0395899_0005315 Ga0395899_0005315_2887_4083 398
89 3300037418 Ga0395900_0022449 Ga0395900_0022449_342_1538 398
90 3300037466 Ga0395898_0032057 Ga0395898_0032057_3698_4894 398
91 3300037471 Ga0395905_0051036 Ga0395905_0051036_169_1365 398
92 3300038443 Ga0395901_0150812 Ga0395901_0150812_875_2071 398
93 3300038443 Ga0395901_0177409 Ga0395901_0177409_167_1363 398
94 3300042005 Ga0439448_0000467 Ga0439448_0000467_20_1225 398
95 3300044683 Ga0466965_0045792 Ga0466965_0045792_731_1927 398
96 3300044684 Ga0466966_0003428 Ga0466966_0003428_6363_7559 398
97 3300044706 Ga0466964_0007226 Ga0466964_0007226_396_1592 398
98 3300044842 Ga0466957_0000489 Ga0466957_0000489_13726_14922 398
99 3300045049 Ga0466959_0041591 Ga0466959_0041591_1369_2565 398
100 3300045976 Ga0466967_0007970 Ga0466967_0007970_1612_2811 398
101 3300045976 Ga0466967_0034907 Ga0466967_0034907_2012_3208 398
102 3300046457 Ga0495590_0000163 Ga0495590_0000163_16033_17232 398
103 3300046460 Ga0495638_0000098 Ga0495638_0000098_102458_103657 398
104 3300046463 Ga0495653_0000004 Ga0495653_0000004_322168_323364 398
105 3300046471 Ga0495650_0000042 Ga0495650_0000042_43924_45120 398
106 3300046471 Ga0495650_0000445 Ga0495650_0000445_56163_57359 398
107 3300046471 Ga0495650_0004195 Ga0495650_0004195_1917_3113 398
108 3300046471 Ga0495650_0018808 Ga0495650_0018808_204_1400 398
109 3300046471 Ga0495650_0026052 Ga0495650_0026052_1447_2643 398
110 3300046474 Ga0495605_0000042 Ga0495605_0000042_132027_133223 398
111 3300046474 Ga0495605_0010863 Ga0495605_0010863_1039_2235 398
112 3300046475 Ga0495639_0042357 Ga0495639_0042357_595_1794 398
113 3300046492 Ga0495585_0005270 Ga0495585_0005270_1520_2716 398
114 3300046501 Ga0495607_0000317 Ga0495607_0000317_11967_13163 398
115 3300046506 Ga0495583_0000472 Ga0495583_0000472_24543_25742 398
116 3300046507 Ga0495606_0000175 Ga0495606_0000175_78524_79720 398
117 3300046507 Ga0495606_0000680 Ga0495606_0000680_37761_38957 398
118 3300046507 Ga0495606_0017888 Ga0495606_0017888_2873_4069 398
119 3300046512 Ga0495610_0000010 Ga0495610_0000010_6331_7527 398
120 3300046512 Ga0495610_0028079 Ga0495610_0028079_370_1566 398
121 3300046513 Ga0495616_0000559 Ga0495616_0000559_14157_15353 398
122 3300046520 Ga0495637_0000114 Ga0495637_0000114_6540_7736 398
123 3300046524 Ga0495648_0000995 Ga0495648_0000995_12330_13526 398
124 3300046524 Ga0495648_0005293 Ga0495648_0005293_1439_2635 398
125 3300046530 Ga0495654_0000002 Ga0495654_0000002_50770_51966 398
126 3300046530 Ga0495654_0011009 Ga0495654_0011009_3704_4900 398
127 3300046538 Ga0495609_0000009 Ga0495609_0000009_299666_300862 398
128 3300046557 Ga0495622_0000263 Ga0495622_0000263_24560_25759 398
129 3300046558 Ga0495633_0000781 Ga0495633_0000781_24978_26177 398
130 3300046558 Ga0495633_0020286 Ga0495633_0020286_184_1380 398
131 3300046616 Ga0495668_0000288 Ga0495668_0000288_59306_60502 398
132 3300046616 Ga0495668_0000744 Ga0495668_0000744_21641_22840 398
133 3300046616 Ga0495668_0000853 Ga0495668_0000853_9119_10315 398
134 3300046616 Ga0495668_0006860 Ga0495668_0006860_5033_6229 398
135 3300046660 Ga0495625_0000810 Ga0495625_0000810_9017_10216 398
136 3300046660 Ga0495625_0006574 Ga0495625_0006574_6315_7511 398
137 3300046665 Ga0495661_0000113 Ga0495661_0000113_53996_55192 398
138 3300046692 Ga0495671_0000002 Ga0495671_0000002_59431_60627 398
139 3300046692 Ga0495671_0029241 Ga0495671_0029241_399_1595 398
140 3300046794 Ga0495589_0000037 Ga0495589_0000037_54001_55197 398
141 3300046810 Ga0495660_0028411 Ga0495660_0028411_220_1416 398
142 3300047323 Ga0495683_0039870 Ga0495683_0039870_309_1505 398
143 3300047443 Ga0495687_000168 Ga0495687_000168_54001_55197 398
144 3300047443 Ga0495687_000215 Ga0495687_000215_75078_76274 398
145 3300047445 Ga0495677_0000011 Ga0495677_0000011_94641_95837 398
146 3300047469 Ga0495673_0000207 Ga0495673_0000207_62586_63782 398
147 3300047469 Ga0495673_0000265 Ga0495673_0000265_53024_54220 398
148 3300047472 Ga0495686_0035451 Ga0495686_0035451_915_2111 398
149 3300048091 Ga0495626_0045346 Ga0495626_0045346_788_1984 398
150 3300048904 Ga0496101_0032130 Ga0496101_0032130_655_1851 398
151 3300048907 Ga0496104_0259947 Ga0496104_0259947_43_1239 398
152 3300048919 Ga0496116_0082766 Ga0496116_0082766_649_1845 398
153 3300048923 Ga0496120_0072790 Ga0496120_0072790_520_1716 398
154 3300048926 Ga0496123_0003808 Ga0496123_0003808_1490_2686 398
155 3300048929 Ga0496126_0081970 Ga0496126_0081970_549_1745 398
156 3300053145 Ga0500586_000643 Ga0500586_000643_1515_2711 398
157 3300046512 Ga0495610_0012991 Ga0495610_0012991_1871_3070 399
158 3300047469 Ga0495673_0000028 Ga0495673_0000028_457102_458301 399
159 3300030731 Ga0316177_1200553 Ga0316177_12005533 400
160 3300030745 Ga0316182_1052054 Ga0316182_10520543 400
161 3300047447 Ga0495685_002214 Ga0495685_002214_2939_4141 400
162 3300048905 Ga0496102_0000123 Ga0496102_0000123_49134_50336 400
163 3300048906 Ga0496103_0009497 Ga0496103_0009497_1461_2663 400
164 3300002738 JGI25154J39366_1002754 JGI25154J39366_10027543 401
165 3300003771 Ga0055526_1000068 Ga0055526_100006834 401
166 3300025233 Ga0209437_104100 Ga0209437_1041002 401
167 3300025246 Ga0209646_1000077 Ga0209646_1000077158 401
168 3300025295 Ga0209564_1000072 Ga0209564_100007258 401
169 3300046522 Ga0495643_0000551 Ga0495643_0000551_31266_32480 401
170 3300046542 Ga0495597_0000266 Ga0495597_0000266_14315_15529 401
171 3300047443 Ga0495687_001842 Ga0495687_001842_15543_16757 401

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02687

FtsX

FtsX-like permease family

283

397

0.93

PF12704

MacB_PCD

MacB-like periplasmic core domain

18

241

0.62

Structural Annotation

Top 5 Hits

ID Description Score Start End
5f9q-assembly1.cif.gz_A crystal structure of the extracellular domain of noncanonic abc-type transporter yknz from gram-positive bacteria 0.7316 55 259
5f9q-assembly1.cif.gz_A crystal structure of the extracellular domain of noncanonic abc-type transporter yknz from gram-positive bacteria 0.7216 55 259
3ftj-assembly1.cif.gz_A crystal structure of the periplasmic region of macb from actinobacillus actinomycetemcomitans 0.7212 42 268
7w7c-assembly1.cif.gz_B-2 heme exporter in the unliganded form 0.7021 277 398
3ftj-assembly1.cif.gz_A crystal structure of the periplasmic region of macb from actinobacillus actinomycetemcomitans 0.7004 42 268
ID Description Score Start End Superfamily
4mmoB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.5387 215 260 3.30.70.360
af_A0A1D8PEL1_240_382_3.30.70.890 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;GHMP kinase, C-terminal domain 0.533 219 259 3.30.70.890
af_Q8CHC4_890_975_3.30.70.330 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RRM (RNA recognition motif) domain 0.5284 51 91 3.30.70.330
5jsnD00 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; Chain A, domain 4;Ribosome-recycling factor 0.5246 291 390 1.10.132.20
af_A2BGN1_227_372_3.30.70.890 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;GHMP kinase, C-terminal domain 0.5223 219 259 3.30.70.890
ID Description Score Start End GO Terms
AF-A0A4Z0PVB4-F1-model_v4 FtsX-like permease family protein 0.8922 1 401 GO:0005886
GO:0022857
AF-A0A4Z0PVB4-F1-model_v4 FtsX-like permease family protein 0.8901 1 401 GO:0005886
GO:0022857
AF-E4RWG5-F1-model_v4 ABC3 transporter permease protein domain-containing protein 0.8897 1 401 GO:0005886
GO:0022857
AF-E4RWG5-F1-model_v4 ABC3 transporter permease protein domain-containing protein 0.8876 1 401 GO:0005886
GO:0022857
AF-A0A437R4D3-F1-model_v4 FtsX-like permease family protein 0.8848 1 401 GO:0005886
GO:0022857

Feature Viewer

pLDDT pTM Quality
82.92 0.77 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map