F259225

General Info

Members Datasets Scaffolds Average Seq Length
171 107 113 493

Family's Representative Sequence

Representative Sequence 3300042007|Ga0439449_0002872|Ga0439449_0002872_2173_3729
Length 518
Sequence MQSNRGFKPWLDWKPYKSNTNLFMKELIKIHSRDNVVIALRPFSKGDVIEVNDASIELLDDIERGHKIALTEIEEGADILKYGYPIGKATTAIKTGQHVHVHNVKTKLGDVFDYTYNPSFTELIHPKRNLTFQGYRRKNGEVGIRNEIWIVPTVGCVNGIAEQIIREFKAEVNPTDIEGMEVFKHNYGCSQLGDDHENTRKMLSNIASHPNAGGVLVLGLGCENNKIDEFEAGLGDYDKSRIKFLASQKAKNEVEEAIVLLKEIYEEVRKDKREPIPLSELKVGLKCGGSDGLSGITANPLVGYFSDFLISQGGTTTLTEVPEMFGAETILMDRCVSEDVFHKTVSLINDFKQYFIDLKQPIYENPSPGNKAGGISTLEDKSLGCTQKGGNAAVMDVLKYGERLKVKGLNLLSAPGNDLVSTTALGAAGSHIVLFTTGRGTPFGSFIPTMKIATNSELAKNKPHWIDYNAGPLAEDKTFDAALEEMIDKIIRVASGEKASHEKAGFREIAIFKSGVTL

Samples

Sample ID Description Type Environment
1 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
2 2554235283 Bacillus safensis VK Isolate Rhizosphere
3 2565956521 Vibrio rhizosphaerae DSM 18581 Isolate Rhizosphere
4 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
5 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
6 2643221735 Bacillus sp. Root920 Isolate Unclassified
7 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
8 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
9 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
10 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
11 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
12 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
13 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
14 2772190666 Serratia surfactantfaciens YD25 Isolate Unclassified
15 2788500588 Lysinibacillus sp. YS11 Isolate Unclassified
16 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
17 2811994870 Bacillus sp. JB4 Isolate Unclassified
18 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
19 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
20 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
21 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
22 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
23 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
24 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
25 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
26 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
27 2904606771 Lysinibacillus macroides 1284 Isolate Rhizosphere
28 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
29 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
30 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
31 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
32 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
33 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
34 2919726948 Bacillus pumilus 4489 Isolate Unclassified
35 2929004312 Priestia megaterium 1104 Isolate Unclassified
36 2937967321 Serratia sp. YC16 Isolate Unclassified
37 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
38 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
39 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
40 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
41 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
42 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
43 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
44 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
45 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
46 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
47 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
48 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
49 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
50 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
51 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
52 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
53 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
54 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
55 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
56 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
57 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
58 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
62 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
67 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
70 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
71 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
72 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
73 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
80 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
81 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
82 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
83 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
84 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
85 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
89 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
90 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
93 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
94 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
95 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
96 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
97 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
98 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
102 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
103 8015394850 Serratia sp. PGPR-27 Isolate Rhizosphere
104 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
105 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
106 8022948649 Bacillus endophyticus FH5 Isolate Rhizosphere
107 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 66.08
Metatranscriptomes 0
Isolates 33.92

Biome Distribution

Category Percentage (%)
Aerial Root 1.17
Bulb 0
Endosphere 3.51
Nodule 3.51
Rhizoplane 5.85
Rhizosphere 43.27
Stem 0
Stem Tuber 0
Unclassified 42.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000011 3300003187 Bacteria 264206
2 Ga0070658_10015510 3300005327 Bacteria 6094
3 Ga0070659_100000383 3300005366 Bacteria 33558
4 Ga0079104_1000523 3300006946 Bacteria 40865
5 Ga0079104_1004201 3300006946 Bacteria 6266
6 Ga0079104_1008200 3300006946 Bacteria 3690
7 Ga0105250_10043384 3300009092 Bacteria 1802
8 Ga0209673_1006897 3300025273 Bacteria 5379
9 Ga0209130_1013468 3300025284 Bacteria 2092
10 Ga0209676_1000347 3300025292 Bacteria 87634
11 Ga0209025_1000011 3300025294 Bacteria 976387
12 Ga0209025_1019197 3300025294 Bacteria 3816
13 Ga0207696_1006833 3300025711 Bacteria 4541
14 Ga0207690_10001605 3300025932 Bacteria 14082
15 Ga0209281_1000357 3300027111 Bacteria 75457
16 Ga0209281_1000973 3300027111 Bacteria 22997
17 Ga0209281_1008761 3300027111 Bacteria 2426
18 Ga0307408_100000236 3300031548 Bacteria 57955
19 Ga0307408_100001050 3300031548 Bacteria 21208
20 Ga0307408_100009687 3300031548 Bacteria 6351
21 Ga0307408_100027411 3300031548 Bacteria 3925
22 Ga0307405_10030506 3300031731 Bacteria 3162
23 Ga0307412_10001644 3300031911 Bacteria 12339
24 Ga0307412_10061185 3300031911 Bacteria 2530
25 Ga0307416_100057776 3300032002 Bacteria 3141
26 Ga0400483_019782 3300039062 Bacteria 2512
27 Ga0400483_053186 3300039062 Bacteria 5235
28 Ga0400483_055664 3300039062 Bacteria 2221
29 Ga0400483_126751 3300039062 Bacteria 27006
30 Ga0400483_193296 3300039062 Bacteria 1389
31 Ga0400483_195774 3300039062 Bacteria 4103
32 Ga0400489_36236 3300039093 Bacteria 12258
33 Ga0451795_0208822 3300041456 Bacteria 3476
34 Ga0439449_0002872 3300042007 Bacteria 6698
35 Ga0439457_003714 3300042014 Bacteria 4110
36 Ga0451577_0000090 3300042876 Bacteria 202241
37 Ga0451577_0080825 3300042876 Bacteria 2898
38 Ga0451577_0082011 3300042876 Bacteria 2876
39 Ga0451577_0188502 3300042876 Unclassified 1860
40 Ga0451577_0192614 3300042876 Bacteria 1839
41 Ga0453683_0000005 3300044673 Bacteria 741657
42 Ga0453683_0002252 3300044673 Bacteria 15244
43 Ga0466961_0092826 3300044693 Bacteria 1905
44 Ga0453684_0000322 3300044712 Bacteria 202241
45 Ga0453684_0000469 3300044712 Bacteria 160413
46 Ga0453684_0002121 3300044712 Bacteria 49974
47 Ga0453684_0020034 3300044712 Bacteria 10130
48 Ga0453684_0061353 3300044712 Bacteria 4827
49 Ga0453684_0079238 3300044712 Bacteria 4107
50 Ga0453684_0191664 3300044712 Bacteria 2391
51 Ga0453684_0299229 3300044712 Bacteria 1829
52 Ga0451576_0000614 3300045051 Bacteria 74965
53 Ga0451576_0001114 3300045051 Bacteria 48965
54 Ga0451576_0175493 3300045051 Bacteria 2237
55 Ga0451576_0186560 3300045051 Bacteria 2166
56 Ga0451576_0262673 3300045051 Bacteria 1805
57 Ga0495603_0027147 3300046455 Bacteria 3457
58 Ga0495622_0026944 3300046557 Bacteria 2682
59 Ga0495660_0012292 3300046810 Bacteria 4967
60 Ga0495672_0004015 3300047320 Bacteria 12306
61 Ga0496100_0102528 3300048903 Bacteria 1975
62 Ga0496102_0016888 3300048905 Bacteria 6387
63 Ga0496102_0035840 3300048905 Bacteria 4468
64 Ga0496103_0032646 3300048906 Bacteria 3178
65 Ga0496110_0078889 3300048913 Bacteria 2931
66 Ga0496112_0231034 3300048915 Bacteria 1804
67 Ga0496113_0101829 3300048916 Bacteria 2227
68 Ga0496116_0000756 3300048919 Bacteria 41062
69 Ga0496116_0007138 3300048919 Bacteria 9992
70 Ga0496116_0010357 3300048919 Bacteria 7827
71 Ga0496117_0000456 3300048920 Bacteria 68180
72 Ga0496118_0013467 3300048921 Bacteria 7731
73 Ga0496118_0014954 3300048921 Bacteria 7220
74 Ga0496119_0000003 3300048922 Bacteria 550563
75 Ga0496119_0004140 3300048922 Bacteria 14595
76 Ga0496119_0006576 3300048922 Bacteria 10714
77 Ga0496119_0007277 3300048922 Bacteria 10013
78 Ga0496119_0007769 3300048922 Bacteria 9561
79 Ga0496119_0020964 3300048922 Bacteria 4739
80 Ga0496119_0047051 3300048922 Bacteria 2687
81 Ga0496120_0000001 3300048923 Bacteria 630849
82 Ga0496120_0000219 3300048923 Bacteria 99099
83 Ga0496120_0000552 3300048923 Bacteria 57133
84 Ga0496120_0001125 3300048923 Bacteria 34586
85 Ga0496120_0001175 3300048923 Bacteria 33428
86 Ga0496120_0004548 3300048923 Bacteria 11561
87 Ga0496120_0004834 3300048923 Bacteria 11023
88 Ga0496120_0074096 3300048923 Bacteria 1860
89 Ga0496121_0012825 3300048924 Bacteria 9071
90 Ga0496121_0018503 3300048924 Bacteria 7021
91 Ga0496122_0000015 3300048925 Bacteria 489028
92 Ga0496122_0018117 3300048925 Bacteria 6524
93 Ga0496122_0042522 3300048925 Bacteria 3573
94 Ga0496122_0123257 3300048925 Bacteria 1666
95 Ga0496123_0002884 3300048926 Bacteria 20158
96 Ga0496123_0060687 3300048926 Bacteria 2436
97 Ga0496124_0000053 3300048927 Bacteria 252285
98 Ga0496124_0000335 3300048927 Bacteria 86882
99 Ga0496124_0043656 3300048927 Bacteria 3853
100 Ga0496125_0000057 3300048928 Bacteria 266453
101 Ga0496125_0002266 3300048928 Bacteria 25541
102 Ga0496125_0003654 3300048928 Bacteria 18407
103 Ga0496125_0008160 3300048928 Bacteria 11025
104 Ga0496126_0000008 3300048929 Bacteria 781752
105 Ga0496126_0000043 3300048929 Bacteria 337789
106 Ga0496126_0000194 3300048929 Bacteria 136093
107 Ga0496126_0001202 3300048929 Bacteria 42234
108 Ga0496126_0002887 3300048929 Bacteria 22411
109 Ga0496126_0023617 3300048929 Bacteria 5956
110 Ga0496126_0042561 3300048929 Bacteria 4194
111 Ga0501034_0004207 3300049571 Bacteria 16071
112 Ga0501083_0001118 3300049744 Bacteria 17960
113 Ga0501083_0011248 3300049744 Bacteria 6278

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039062 Ga0400483_193296 Ga0400483_193296_34_1299 421
2 iso_pu_bacteria 2996706504 2996710955 446
3 iso_pu_bacteria 2788500588 2791215801 447
4 iso_pu_bacteria 2823526263 2823529490 457
5 3300045051 Ga0451576_0175493 Ga0451576_0175493_15_1400 461
6 iso_pu_bacteria 2721755693 2723603684 466
7 3300031548 Ga0307408_100000236 Ga0307408_10000023630 469
8 3300048905 Ga0496102_0035840 Ga0496102_0035840_3019_4431 470
9 3300042876 Ga0451577_0192614 Ga0451577_0192614_222_1709 483
10 3300044712 Ga0453684_0061353 Ga0453684_0061353_2072_3559 483
11 3300045051 Ga0451576_0262673 Ga0451576_0262673_157_1650 484
12 3300031731 Ga0307405_10030506 Ga0307405_100305063 485
13 3300044673 Ga0453683_0000005 Ga0453683_0000005_513975_515462 485
14 3300048922 Ga0496119_0007769 Ga0496119_0007769_609_2078 489
15 3300048923 Ga0496120_0000552 Ga0496120_0000552_1878_3347 489
16 3300048925 Ga0496122_0042522 Ga0496122_0042522_1869_3338 489
17 3300048927 Ga0496124_0000335 Ga0496124_0000335_22457_23926 489
18 3300048929 Ga0496126_0001202 Ga0496126_0001202_6992_8461 489
19 iso_pu_bacteria 2857604169 2857606013 490
20 iso_pu_bacteria 2548877040 2550900484 491
21 iso_pu_bacteria 2565956521 2566035083 491
22 iso_pu_bacteria 2571042143 2571527565 491
23 iso_pu_bacteria 2600255286 2601641289 491
24 iso_pu_bacteria 2728368933 2728534545 491
25 iso_pu_bacteria 2772190666 2772440878 491
26 iso_pu_bacteria 2888366609 2888370983 491
27 iso_pu_bacteria 2907202186 2907204188 491
28 iso_pu_bacteria 2916178963 2916179392 491
29 iso_pu_bacteria 2937967321 2937971282 491
30 iso_pu_bacteria 2938649242 2938649852 491
31 iso_pu_bacteria 2968558590 2968562828 491
32 iso_pu_bacteria 2971403814 2971408092 491
33 iso_pu_bacteria 2988225383 2988226784 491
34 iso_pu_bacteria 2990275345 2990276522 491
35 iso_pu_bacteria 2996632988 2996635697 491
36 iso_pu_bacteria 3001892409 3001893990 491
37 iso_pu_bacteria 8015394850 8015397152 491
38 iso_pu_bacteria 8054465665 8054469868 491
39 3300039062 Ga0400483_019782 Ga0400483_019782_502_1983 492
40 3300041456 Ga0451795_0208822 Ga0451795_0208822_561_2042 492
41 3300049571 Ga0501034_0004207 Ga0501034_0004207_204_1751 492
42 iso_pu_bacteria 2728369359 2730139678 492
43 iso_pu_bacteria 2751185905 2753808028 492
44 iso_pu_bacteria 2757320391 2757566244 492
45 iso_pu_bacteria 2802428803 2802435814 492
46 iso_pu_bacteria 2816332295 2817481628 492
47 iso_pu_bacteria 2889276214 2889279615 492
48 iso_pu_bacteria 2904524088 2904527215 492
49 iso_pu_bacteria 2904595352 2904596942 492
50 iso_pu_bacteria 2919143609 2919144193 492
51 iso_pu_bacteria 2919517244 2919519390 492
52 iso_pu_bacteria 2929004312 2929008022 492
53 iso_pu_bacteria 2960319331 2960322898 492
54 iso_pu_bacteria 2960375949 2960377696 492
55 iso_pu_bacteria 2984527788 2984531253 492
56 iso_pu_bacteria 2984532647 2984537363 492
57 iso_pu_bacteria 3006858327 3006862056 492
58 iso_pu_bacteria 3006984091 3006987342 492
59 iso_pu_bacteria 648028048 648169978 492
60 iso_pu_bacteria 8022893055 8022894067 492
61 iso_pu_bacteria 8022914991 8022915135 492
62 iso_pu_bacteria 8022948649 8022951803 492
63 3300048919 Ga0496116_0000756 Ga0496116_0000756_1200_2681 493
64 3300048919 Ga0496116_0007138 Ga0496116_0007138_3268_4749 493
65 3300048919 Ga0496116_0010357 Ga0496116_0010357_1359_2840 493
66 3300048920 Ga0496117_0000456 Ga0496117_0000456_19478_20959 493
67 3300048921 Ga0496118_0014954 Ga0496118_0014954_4290_5771 493
68 3300048922 Ga0496119_0000003 Ga0496119_0000003_450834_452315 493
69 3300048922 Ga0496119_0004140 Ga0496119_0004140_13013_14494 493
70 3300048922 Ga0496119_0020964 Ga0496119_0020964_2432_3913 493
71 3300048923 Ga0496120_0000001 Ga0496120_0000001_177523_179004 493
72 3300048923 Ga0496120_0000219 Ga0496120_0000219_18_1499 493
73 3300048923 Ga0496120_0004834 Ga0496120_0004834_1406_2887 493
74 3300048923 Ga0496120_0074096 Ga0496120_0074096_102_1583 493
75 3300048925 Ga0496122_0000015 Ga0496122_0000015_179081_180562 493
76 3300048925 Ga0496122_0018117 Ga0496122_0018117_3664_5145 493
77 3300048925 Ga0496122_0123257 Ga0496122_0123257_80_1561 493
78 3300048926 Ga0496123_0002884 Ga0496123_0002884_15014_16495 493
79 3300048926 Ga0496123_0060687 Ga0496123_0060687_181_1662 493
80 3300048927 Ga0496124_0043656 Ga0496124_0043656_1526_3007 493
81 3300048928 Ga0496125_0000057 Ga0496125_0000057_36022_37503 493
82 3300048929 Ga0496126_0000008 Ga0496126_0000008_705948_707429 493
83 3300048929 Ga0496126_0000194 Ga0496126_0000194_96849_98330 493
84 3300048929 Ga0496126_0023617 Ga0496126_0023617_4198_5679 493
85 iso_pu_bacteria 2554235283 2555468233 493
86 iso_pu_bacteria 2643221735 2644738955 493
87 iso_pu_bacteria 2684623153 2686998384 493
88 iso_pu_bacteria 2687453109 2687499659 493
89 iso_pu_bacteria 2811994870 2812317514 493
90 iso_pu_bacteria 2818991468 2819722576 493
91 iso_pu_bacteria 2889295896 2889296617 493
92 iso_pu_bacteria 2904606771 2904609481 493
93 iso_pu_bacteria 2908665501 2908666859 493
94 iso_pu_bacteria 2919093281 2919095125 493
95 iso_pu_bacteria 2919726948 2919727699 493
96 iso_pu_bacteria 2954773129 2954776973 493
97 iso_pu_bacteria 2956897341 2956900615 494
98 3300005327 Ga0070658_10015510 Ga0070658_100155103 495
99 3300005366 Ga0070659_100000383 Ga0070659_10000038314 495
100 3300006946 Ga0079104_1000523 Ga0079104_100052321 495
101 3300006946 Ga0079104_1004201 Ga0079104_10042013 495
102 3300006946 Ga0079104_1008200 Ga0079104_10082002 495
103 3300025284 Ga0209130_1013468 Ga0209130_10134681 495
104 3300025292 Ga0209676_1000347 Ga0209676_100034713 495
105 3300025932 Ga0207690_10001605 Ga0207690_1000160513 495
106 3300027111 Ga0209281_1000357 Ga0209281_100035710 495
107 3300027111 Ga0209281_1000973 Ga0209281_10009736 495
108 3300027111 Ga0209281_1008761 Ga0209281_10087612 495
109 3300031548 Ga0307408_100001050 Ga0307408_1000010504 495
110 3300031548 Ga0307408_100009687 Ga0307408_1000096873 495
111 3300031911 Ga0307412_10001644 Ga0307412_100016442 495
112 3300031911 Ga0307412_10061185 Ga0307412_100611852 495
113 3300039062 Ga0400483_053186 Ga0400483_053186_3699_5189 495
114 3300039062 Ga0400483_055664 Ga0400483_055664_91_1581 495
115 3300039062 Ga0400483_126751 Ga0400483_126751_2668_4170 495
116 3300039062 Ga0400483_195774 Ga0400483_195774_890_2380 495
117 3300039093 Ga0400489_36236 Ga0400489_36236_5078_6580 495
118 3300042007 Ga0439449_0002872 Ga0439449_0002872_2173_3729 495
119 3300042014 Ga0439457_003714 Ga0439457_003714_555_2111 495
120 3300042876 Ga0451577_0000090 Ga0451577_0000090_195060_196604 495
121 3300042876 Ga0451577_0080825 Ga0451577_0080825_1132_2619 495
122 3300042876 Ga0451577_0082011 Ga0451577_0082011_1137_2624 495
123 3300042876 Ga0451577_0188502 Ga0451577_0188502_24_1511 495
124 3300044673 Ga0453683_0002252 Ga0453683_0002252_5610_7154 495
125 3300044693 Ga0466961_0092826 Ga0466961_0092826_312_1802 495
126 3300044712 Ga0453684_0000322 Ga0453684_0000322_195060_196604 495
127 3300044712 Ga0453684_0000469 Ga0453684_0000469_17410_18897 495
128 3300044712 Ga0453684_0002121 Ga0453684_0002121_10835_12322 495
129 3300044712 Ga0453684_0020034 Ga0453684_0020034_5737_7224 495
130 3300044712 Ga0453684_0079238 Ga0453684_0079238_1567_3054 495
131 3300044712 Ga0453684_0191664 Ga0453684_0191664_402_1892 495
132 3300044712 Ga0453684_0299229 Ga0453684_0299229_293_1780 495
133 3300045051 Ga0451576_0000614 Ga0451576_0000614_56071_57558 495
134 3300045051 Ga0451576_0001114 Ga0451576_0001114_5638_7182 495
135 3300045051 Ga0451576_0186560 Ga0451576_0186560_276_1763 495
136 3300046810 Ga0495660_0012292 Ga0495660_0012292_2856_4343 495
137 3300047320 Ga0495672_0004015 Ga0495672_0004015_3868_5376 495
138 3300048903 Ga0496100_0102528 Ga0496100_0102528_109_1596 495
139 3300048915 Ga0496112_0231034 Ga0496112_0231034_140_1627 495
140 3300048916 Ga0496113_0101829 Ga0496113_0101829_270_1757 495
141 3300048922 Ga0496119_0006576 Ga0496119_0006576_5943_7430 495
142 3300048922 Ga0496119_0007277 Ga0496119_0007277_3291_4778 495
143 3300048923 Ga0496120_0001125 Ga0496120_0001125_21905_23392 495
144 3300048923 Ga0496120_0001175 Ga0496120_0001175_20754_22241 495
145 3300048927 Ga0496124_0000053 Ga0496124_0000053_22163_23650 495
146 3300048928 Ga0496125_0002266 Ga0496125_0002266_19099_20589 495
147 3300048928 Ga0496125_0008160 Ga0496125_0008160_4187_5674 495
148 3300048929 Ga0496126_0000043 Ga0496126_0000043_168010_169497 495
149 3300048929 Ga0496126_0002887 Ga0496126_0002887_9699_11186 495
150 3300049744 Ga0501083_0001118 Ga0501083_0001118_15740_17230 495
151 3300049744 Ga0501083_0011248 Ga0501083_0011248_4766_6256 495
152 3300009092 Ga0105250_10043384 Ga0105250_100433842 496
153 3300025273 Ga0209673_1006897 Ga0209673_10068972 496
154 3300025294 Ga0209025_1019197 Ga0209025_10191973 496
155 3300025711 Ga0207696_1006833 Ga0207696_10068332 496
156 3300031548 Ga0307408_100027411 Ga0307408_1000274113 496
157 3300032002 Ga0307416_100057776 Ga0307416_1000577762 496
158 3300046455 Ga0495603_0027147 Ga0495603_0027147_436_1926 496
159 3300046557 Ga0495622_0026944 Ga0495622_0026944_429_1922 496
160 3300048905 Ga0496102_0016888 Ga0496102_0016888_1051_2544 496
161 3300048906 Ga0496103_0032646 Ga0496103_0032646_1402_2895 496
162 3300048913 Ga0496110_0078889 Ga0496110_0078889_43_1533 496
163 3300048921 Ga0496118_0013467 Ga0496118_0013467_45_1544 496
164 3300048922 Ga0496119_0047051 Ga0496119_0047051_692_2191 496
165 3300048923 Ga0496120_0004548 Ga0496120_0004548_3982_5481 496
166 3300048924 Ga0496121_0012825 Ga0496121_0012825_2552_4051 496
167 3300048924 Ga0496121_0018503 Ga0496121_0018503_820_2319 496
168 3300048928 Ga0496125_0003654 Ga0496125_0003654_2948_4447 496
169 3300048929 Ga0496126_0042561 Ga0496126_0042561_1901_3400 496
170 3300003187 JGI25151J46595_10000011 JGI25151J46595_10000011238 497
171 3300025294 Ga0209025_1000011 Ga0209025_1000011756 497

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20629

GD_AH_C

D-galactarate/Altronate dehydratase, C-terminal

278

517

0.99

PF04295

GD_AH_second

D-galactarate dehydratase/Altronate hydrolase, second domain

134

269

0.98

PF08666

SAF

SAF domain

34

105

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
3k3s-assembly3.cif.gz_C crystal structure of altronate hydrolase (fragment 1-84) from shigella flexneri. 0.9724 3 85
3k3s-assembly3.cif.gz_C crystal structure of altronate hydrolase (fragment 1-84) from shigella flexneri. 0.939 3 85
6u7l-assembly2.cif.gz_D 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.8892 1 497
6u7l-assembly2.cif.gz_D 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.8873 1 497
6u7l-assembly1.cif.gz_A 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. 0.8809 1 497
ID Description Score Start End Superfamily
3k3sD01 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.9546 4 85 2.30.130.110
af_P39829_14_92_2.30.130.110 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.9447 4 82 2.30.130.110
3k3sD01 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.9325 4 85 2.30.130.110
af_P39829_14_92_2.30.130.110 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4; 0.9215 4 82 2.30.130.110
af_O74765_317_422_3.40.50.800 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Anticodon-binding domain 0.6787 121 165 3.40.50.800
ID Description Score Start End GO Terms
AF-A0A1L5KMQ0-F1-model_v4 SAF domain 0.9936 2 83 GO:0016829
GO:0019698
AF-A0A5J4RPN1-F1-model_v4 Altronate dehydratase (EC 4.2.1.7) 0.99 1 86 GO:0008789
GO:0019698
AF-A0A1F5DIZ3-F1-model_v4 SAF domain-containing protein 0.9845 1 82 GO:0016829
GO:0019698
AF-A0A389M145-F1-model_v4 SAF domain-containing protein 0.9837 1 83 GO:0016829
GO:0019698
AF-A0A7X8W1R3-F1-model_v4 UxaA family hydrolase 0.9834 1 82 GO:0016787
GO:0019698

Feature Viewer

pLDDT pTM Quality
90.77 0.9 High
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Predicted Structure (AlphaFold2)

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