F258125

General Info

Members Datasets Scaffolds Average Seq Length
171 151 144 394

Family's Representative Sequence

Representative Sequence 3300005347|Ga0070668_100003311|Ga0070668_1000033113
Length 446
Sequence MADMTDDDILAELGVDLTPGKVRARTPREERIIAGFEDIVRFREAHGRAPQHGEGRDIFERLYAVRLDRLRAQQDCRALLAEMDVHGLLEAGGGVDAIDALDDNALLAELGIEAAAPGDITQLRNVRSNADRKAAEEVASARRCADFATFKPLFDRVQADLEAGVRTTRPFVRDLGMSKADIRQGEFFIVGGQVAYVASMGDPIEAPNGEADARLRVIYSNGTESDLLLRSLQRALYKDAGGRRITEPTAGPLFDEAAPAAAEPDLLQTGTLYVLRSRSTHPTIAAHRDLIHKIGITGGPVEARIAGAADDATYLLAEVDVVATYKLYDVHRTRLEALIHRVLDTVRFDVEIPDRFGKPVRPREWFLVPVPIIDEIVARIADGTLAGMTYDPRSVALVPAQAAPARVTPPPAPGSARRPVRSRGDGPGAAPVASSTSRTPDAPGSS

Samples

Sample ID Description Type Environment
1 2124908027 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v1 Metagenome Rhizosphere
2 2510461076 Rhizobium leguminosarum bv. trifolii TA1 Isolate Nodule
3 2515154116 Rhizobium ruizarguesonis Ps8 Isolate Nodule
4 2599185190 Pseudomonas sp. NFPP04 Isolate Rhizoplane
5 2599185290 Pseudomonas sp. NFPP11 Isolate Rhizoplane
6 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
7 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
8 2643221611 Acidovorax sp. Root219 Isolate Unclassified
9 2643221674 Devosia sp. Root436 Isolate Unclassified
10 2643221688 Rhizobium sp. Root482 Isolate Unclassified
11 2718218235 Rhizobium phaseoli sv. phaseoli R620 Isolate Nodule
12 2718218269 Rhizobium phaseoli sv. phaseoli N671 Isolate Nodule
13 2721755607 Pseudomonas fluorescens Pt14 Isolate Rhizosphere
14 2721755685 Rhizobium phaseoli sv. phaseoli R611 Isolate Nodule
15 2721755819 Rhizobium phaseoli sv. phaseoli N771 Isolate Nodule
16 2721755822 Rhizobium phaseoli sv. phaseoli R650 Isolate Nodule
17 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
18 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
19 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
20 2919501602 Pseudomonas alcaliphila 3512 Isolate Unclassified
21 2926063275 Pseudomonas sp. 3400 Isolate Unclassified
22 2936375103 Rhizobium changzhiense WYCCWR 11317 Isolate Nodule
23 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
24 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
25 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
26 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
27 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
28 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
29 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
30 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
31 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
32 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
33 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
34 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
36 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
37 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
38 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
39 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
40 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
41 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
42 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
43 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
44 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
45 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
46 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
47 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
58 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
59 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
60 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
61 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
62 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
63 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
64 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
65 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
67 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
80 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
81 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
82 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
83 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
84 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
85 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
86 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
87 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
88 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
89 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
90 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
91 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
92 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
93 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
94 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
95 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
96 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
97 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
98 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
99 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
100 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
101 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
102 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
105 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
106 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
107 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
108 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
109 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
110 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
111 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
112 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
113 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
114 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
115 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
116 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
117 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
118 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
119 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
120 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
121 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
122 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
123 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
124 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
125 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
126 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
127 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
128 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
129 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
130 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
131 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
132 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
133 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
134 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
139 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
141 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
142 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
143 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
144 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
145 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
146 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
147 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
148 8005688590 Rhizobium bangladeshense 1024 Isolate Nodule
149 8054503363 Pseudomonas sivasensis BsEB-1 Isolate Unclassified
150 8056115690 Pseudomonas muyukensis COW39 Isolate Rhizosphere
151 8056382006 Rhizobium croatiense 13T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 84.21
Metatranscriptomes 0
Isolates 15.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.7
Nodule 7.02
Rhizoplane 2.92
Rhizosphere 64.91
Stem 0
Stem Tuber 0
Unclassified 13.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS2a_Contig_1661 2124908027 Bacteria 10792
2 JGI24735J21928_10000727 3300002067 Bacteria 11692
3 JGI24749J21850_1000075 3300002076 Bacteria 17989
4 JGI25152J39213_1000452 3300002773 Bacteria 24181
5 JGI25150J39212_1000358 3300002774 Bacteria 22416
6 JGI25150J39212_1000899 3300002774 Bacteria 9712
7 JGI25151J46595_10000848 3300003187 Bacteria 24358
8 JGI25153J46596_10000585 3300003215 Bacteria 22420
9 rootH1_10141312 3300003316 Bacteria 2522
10 rootH1_10020010 3300003323 Bacteria 34376
11 Ga0055528_1001405 3300003790 Bacteria 14751
12 Ga0055531_10002704 3300003794 Bacteria 11674
13 Ga0065714_10002929 3300005288 Bacteria 9594
14 Ga0065714_10066757 3300005288 Bacteria 6343
15 Ga0065714_10068695 3300005288 Bacteria 4581
16 Ga0070668_100003311 3300005347 Bacteria 11883
17 Ga0070669_100000020 3300005353 Bacteria 181297
18 Ga0070662_100198182 3300005457 Bacteria 1592
19 Ga0070681_10057578 3300005458 Bacteria 3867
20 Ga0068853_100003736 3300005539 Bacteria 11679
21 Ga0070665_100177121 3300005548 Bacteria 2133
22 Ga0070665_100208331 3300005548 Bacteria 1956
23 Ga0068855_100003674 3300005563 Bacteria 18767
24 Ga0068855_100007944 3300005563 Bacteria 12821
25 Ga0068855_100047631 3300005563 Bacteria 5063
26 Ga0068857_100170695 3300005577 Bacteria 1977
27 Ga0068857_100429037 3300005577 Bacteria 1233
28 Ga0068859_100003071 3300005617 Bacteria 16928
29 Ga0068862_100009087 3300005844 Bacteria 8225
30 Ga0070712_100039754 3300006175 Bacteria 3220
31 Ga0075366_10081087 3300006195 Bacteria 1938
32 Ga0097620_100003071 3300006931 Bacteria 16928
33 Ga0105251_10036298 3300009011 Bacteria 2426
34 Ga0105240_10008076 3300009093 Bacteria 15123
35 Ga0105240_10048775 3300009093 Bacteria 5350
36 Ga0111539_10133453 3300009094 Bacteria 2907
37 Ga0105248_10000192 3300009177 Bacteria 70644
38 Ga0105237_10001451 3300009545 Bacteria 31307
39 Ga0105237_10042018 3300009545 Bacteria 4610
40 Ga0105239_10017200 3300010375 Bacteria 7993
41 Ga0157373_10003796 3300013100 Bacteria 11423
42 Ga0157373_10146776 3300013100 Bacteria 1659
43 Ga0157370_10002670 3300013104 Bacteria 21373
44 Ga0157370_10009931 3300013104 Bacteria 10080
45 Ga0157369_10084968 3300013105 Bacteria 3382
46 Ga0182008_10002297 3300014497 Bacteria 12054
47 Ga0182007_10001439 3300015262 Bacteria 12766
48 Ga0163161_10054453 3300017792 Bacteria 2903
49 Ga0213872_10000483 3300021361 Bacteria 32024
50 Ga0213876_10000634 3300021384 Bacteria 25590
51 Ga0207425_1000477 3300025245 Bacteria 25437
52 Ga0207425_1000521 3300025245 Bacteria 23476
53 Ga0209129_1000101 3300025258 Bacteria 161931
54 Ga0209025_1000048 3300025294 Bacteria 335574
55 Ga0209564_1018359 3300025295 Bacteria 2671
56 Ga0209758_1000056 3300025297 Bacteria 335574
57 Ga0209257_1000430 3300025304 Bacteria 80826
58 Ga0207713_1046382 3300025735 Bacteria 1767
59 Ga0207707_10051365 3300025912 Bacteria 3590
60 Ga0207671_10000897 3300025914 Bacteria 37640
61 Ga0207693_10054615 3300025915 Bacteria 3133
62 Ga0207681_10000005 3300025923 Bacteria 555724
63 Ga0207711_10000075 3300025941 Bacteria 106870
64 Ga0207667_10007758 3300025949 Bacteria 12829
65 Ga0207667_10057026 3300025949 Bacteria 4101
66 Ga0207668_10094402 3300025972 Bacteria 2205
67 Ga0207639_10003106 3300026041 Bacteria 11162
68 Ga0207674_10267921 3300026116 Bacteria 1655
69 Ga0207428_10094501 3300027907 Bacteria 2317
70 Ga0265324_10000397 3300029957 Bacteria 31569
71 Ga0265330_10000332 3300031235 Bacteria 33956
72 Ga0265332_10000008 3300031238 Bacteria 301609
73 Ga0265328_10011025 3300031239 Bacteria 3622
74 Ga0265331_10002154 3300031250 Bacteria 13536
75 Ga0307508_10000047 3300031616 Bacteria 137805
76 Ga0316579_10016512 3300031691 Bacteria 3226
77 Ga0265314_10000156 3300031711 Bacteria 102980
78 Ga0316578_10047276 3300031728 Bacteria 2510
79 Ga0316577_10037388 3300031733 Bacteria 2714
80 Ga0316574_0012336 3300035398 Bacteria 4887
81 Ga0316584_0123796 3300036712 Bacteria 1931
82 Ga0395900_0128319 3300037418 Bacteria 2600
83 Ga0400490_12895 3300038726 Bacteria 2468
84 Ga0436365_0775556 3300039437 Bacteria 33404
85 Ga0436361_0441322 3300039447 Bacteria 32824
86 Ga0439438_008520 3300041405 Bacteria 3392
87 Ga0439447_000178 3300041407 Bacteria 22339
88 Ga0439447_007255 3300041407 Bacteria 3532
89 Ga0439466_0000567 3300041411 Bacteria 13900
90 Ga0439466_0002943 3300041411 Bacteria 6652
91 Ga0451833_0358788 3300041491 Bacteria 8492
92 Ga0451837_0187318 3300041494 Bacteria 1893
93 Ga0451841_0186906 3300041498 Bacteria 1866
94 Ga0439432_003022 3300042006 Bacteria 6264
95 Ga0450911_001552 3300042115 Bacteria 5208
96 Ga0453684_0000296 3300044712 Bacteria 211075
97 Ga0451576_0063970 3300045051 Bacteria 3833
98 Ga0495627_002090 3300046453 Bacteria 10153
99 Ga0495591_000423 3300046458 Bacteria 35158
100 Ga0495650_0021691 3300046471 Bacteria 3094
101 Ga0495580_0081370 3300046472 Bacteria 2257
102 Ga0495584_0001034 3300046491 Bacteria 17366
103 Ga0495584_0003324 3300046491 Bacteria 8897
104 Ga0495596_0003357 3300046500 Bacteria 8136
105 Ga0495607_0104551 3300046501 Bacteria 1511
106 Ga0495583_0003868 3300046506 Bacteria 11091
107 Ga0495620_0000007 3300046515 Bacteria 191058
108 Ga0495632_0003062 3300046519 Bacteria 12163
109 Ga0495637_0014996 3300046520 Bacteria 3645
110 Ga0495643_0000556 3300046522 Bacteria 46207
111 Ga0495648_0000620 3300046524 Bacteria 38000
112 Ga0495648_0003169 3300046524 Bacteria 14644
113 Ga0495654_0031389 3300046530 Bacteria 2697
114 Ga0495667_0018621 3300046559 Bacteria 4689
115 Ga0495646_0031701 3300046680 Bacteria 3293
116 Ga0495670_0010163 3300046691 Bacteria 4632
117 Ga0495649_0006592 3300046694 Bacteria 7218
118 Ga0495674_0147957 3300047319 Bacteria 1971
119 Ga0495687_000049 3300047443 Bacteria 205432
120 Ga0495626_0033993 3300048091 Bacteria 2441
121 Ga0496103_0039591 3300048906 Bacteria 2897
122 Ga0496116_0035918 3300048919 Bacteria 3476
123 Ga0496122_0008703 3300048925 Bacteria 10868
124 Ga0496123_0033231 3300048926 Bacteria 3715
125 Ga0496124_0006080 3300048927 Bacteria 13275
126 Ga0496125_0000228 3300048928 Bacteria 114539
127 Ga0495678_019816 3300049459 Bacteria 2990
128 Ga0495682_0000100 3300049460 Bacteria 76271
129 Ga0495682_0000669 3300049460 Bacteria 22781
130 Ga0501032_0030684 3300049569 Bacteria 3688
131 Ga0501034_0063399 3300049571 Bacteria 3709
132 Ga0501034_0081753 3300049571 Bacteria 3233
133 Ga0501043_0128753 3300049579 Bacteria 1984
134 Ga0501047_0347390 3300049581 Bacteria 1320
135 Ga0501080_0089777 3300049742 Bacteria 2855
136 Ga0501035_0018136 3300049822 Bacteria 6485
137 Ga0501044_0010110 3300049823 Bacteria 10252
138 Ga0501044_0145986 3300049823 Bacteria 2351
139 nmdc:mga00v17_203161_c1 3300050491 Bacteria 1281
140 nmdc:mga08y16_110602_c1 3300050511 Bacteria 2861
141 Ga0500650_0000401 3300053098 Bacteria 10655
142 Ga0500562_000140 3300053108 Bacteria 21226
143 Ga0500655_000022 3300053133 Bacteria 43706
144 Ga0500622_0003292 3300053156 Bacteria 10945

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300031691 Ga0316579_10016512 Ga0316579_100165123 330
2 3300031616 Ga0307508_10000047 Ga0307508_10000047114 364
3 3300049571 Ga0501034_0063399 Ga0501034_0063399_759_1952 367
4 3300049581 Ga0501047_0347390 Ga0501047_0347390_88_1281 367
5 3300037418 Ga0395900_0128319 Ga0395900_0128319_158_1294 369
6 3300005548 Ga0070665_100177121 Ga0070665_1001771212 370
7 3300005458 Ga0070681_10057578 Ga0070681_100575781 372
8 3300025912 Ga0207707_10051365 Ga0207707_100513653 372
9 3300003323 rootH1_10020010 rootH1_100200106 373
10 3300006195 Ga0075366_10081087 Ga0075366_100810871 374
11 3300009011 Ga0105251_10036298 Ga0105251_100362981 374
12 3300025735 Ga0207713_1046382 Ga0207713_10463821 374
13 3300041407 Ga0439447_000178 Ga0439447_000178_9761_10960 374
14 3300049569 Ga0501032_0030684 Ga0501032_0030684_288_1481 375
15 3300049822 Ga0501035_0018136 Ga0501035_0018136_1065_2258 375
16 3300049823 Ga0501044_0010110 Ga0501044_0010110_2330_3523 375
17 3300031733 Ga0316577_10037388 Ga0316577_100373883 380
18 3300046472 Ga0495580_0081370 Ga0495580_0081370_361_1575 381
19 3300046530 Ga0495654_0031389 Ga0495654_0031389_595_1776 381
20 3300047319 Ga0495674_0147957 Ga0495674_0147957_31_1245 381
21 3300049460 Ga0495682_0000100 Ga0495682_0000100_46372_47553 381
22 3300048925 Ga0496122_0008703 Ga0496122_0008703_4038_5228 382
23 3300009545 Ga0105237_10042018 Ga0105237_100420186 383
24 3300029957 Ga0265324_10000397 Ga0265324_1000039710 385
25 iso_pu_bacteria 2818991466 2819712507 385
26 iso_pu_bacteria 2510461076 2510898073 386
27 iso_pu_bacteria 2515154116 2515660687 386
28 iso_pu_bacteria 2718218235 2720630250 386
29 iso_pu_bacteria 2718218269 2720773945 386
30 iso_pu_bacteria 2721755685 2723565830 386
31 iso_pu_bacteria 2721755819 2724088552 386
32 iso_pu_bacteria 2721755822 2724103095 386
33 iso_pu_bacteria 2757320392 2757571990 386
34 iso_pu_bacteria 2857442823 2857443063 386
35 iso_pu_bacteria 2936375103 2936377729 386
36 iso_pu_bacteria 8005626139 8005628734 386
37 iso_pu_bacteria 8005688590 8005690560 386
38 iso_pu_bacteria 8056382006 8056386233 386
39 3300002076 JGI24749J21850_1000075 JGI24749J21850_10000758 388
40 3300005617 Ga0068859_100003071 Ga0068859_1000030716 388
41 3300006931 Ga0097620_100003071 Ga0097620_10000307110 388
42 3300009177 Ga0105248_10000192 Ga0105248_1000019247 388
43 3300025941 Ga0207711_10000075 Ga0207711_1000007559 388
44 3300042115 Ga0450911_001552 Ga0450911_001552_2660_3826 388
45 3300046559 Ga0495667_0018621 Ga0495667_0018621_292_1461 388
46 3300049579 Ga0501043_0128753 Ga0501043_0128753_38_1210 388
47 3300049823 Ga0501044_0145986 Ga0501044_0145986_466_1662 388
48 3300050491 nmdc:mga00v17_203161_c1 nmdc:mga00v17_203161_c1_95_1261 388
49 3300053098 Ga0500650_0000401 Ga0500650_0000401_2537_3724 388
50 3300053156 Ga0500622_0003292 Ga0500622_0003292_3353_4552 388
51 iso_pu_bacteria 2600255279 2601611358 388
52 iso_pu_bacteria 2600255308 2601748221 388
53 iso_pu_bacteria 2643221611 2644073096 388
54 iso_pu_bacteria 2643221688 2644492226 388
55 3300005577 Ga0068857_100429037 Ga0068857_1004290371 389
56 3300041494 Ga0451837_0187318 Ga0451837_0187318_383_1585 389
57 3300048919 Ga0496116_0035918 Ga0496116_0035918_27_1244 389
58 3300048926 Ga0496123_0033231 Ga0496123_0033231_45_1244 389
59 3300049460 Ga0495682_0000669 Ga0495682_0000669_52_1221 389
60 3300049571 Ga0501034_0081753 Ga0501034_0081753_651_1841 389
61 iso_pu_bacteria 2643221674 2644413766 389
62 iso_pu_bacteria 2919501602 2919505053 389
63 iso_pu_bacteria 2926063275 2926066730 389
64 iso_pu_bacteria 8054503363 8054508368 389
65 3300002067 JGI24735J21928_10000727 JGI24735J21928_100007275 390
66 3300003790 Ga0055528_1001405 Ga0055528_10014053 390
67 3300005347 Ga0070668_100003311 Ga0070668_1000033113 390
68 3300005353 Ga0070669_100000020 Ga0070669_10000002076 390
69 3300005548 Ga0070665_100208331 Ga0070665_1002083312 390
70 3300005563 Ga0068855_100007944 Ga0068855_1000079447 390
71 3300005844 Ga0068862_100009087 Ga0068862_1000090876 390
72 3300009093 Ga0105240_10008076 Ga0105240_1000807612 390
73 3300009093 Ga0105240_10048775 Ga0105240_100487756 390
74 3300010375 Ga0105239_10017200 Ga0105239_100172003 390
75 3300025923 Ga0207681_10000005 Ga0207681_10000005398 390
76 3300025949 Ga0207667_10007758 Ga0207667_100077587 390
77 3300025972 Ga0207668_10094402 Ga0207668_100944022 390
78 3300031728 Ga0316578_10047276 Ga0316578_100472763 390
79 3300035398 Ga0316574_0012336 Ga0316574_0012336_1656_2846 390
80 3300036712 Ga0316584_0123796 Ga0316584_0123796_28_1224 390
81 3300041491 Ga0451833_0358788 Ga0451833_0358788_809_1987 390
82 3300041498 Ga0451841_0186906 Ga0451841_0186906_386_1564 390
83 3300046471 Ga0495650_0021691 Ga0495650_0021691_573_1766 390
84 3300048928 Ga0496125_0000228 Ga0496125_0000228_23394_24578 390
85 3300049742 Ga0501080_0089777 Ga0501080_0089777_640_1827 390
86 3300053133 Ga0500655_000022 Ga0500655_000022_25709_26920 390
87 3300002774 JGI25150J39212_1000899 JGI25150J39212_10008996 391
88 3300003316 rootH1_10141312 rootH1_101413122 391
89 3300003794 Ga0055531_10002704 Ga0055531_100027043 391
90 3300005539 Ga0068853_100003736 Ga0068853_1000037367 391
91 3300005577 Ga0068857_100170695 Ga0068857_1001706952 391
92 3300021384 Ga0213876_10000634 Ga0213876_1000063413 391
93 3300025245 Ga0207425_1000521 Ga0207425_10005215 391
94 3300025295 Ga0209564_1018359 Ga0209564_10183592 391
95 3300025304 Ga0209257_1000430 Ga0209257_100043010 391
96 3300026041 Ga0207639_10003106 Ga0207639_100031066 391
97 3300026116 Ga0207674_10267921 Ga0207674_102679212 391
98 3300039437 Ga0436365_0775556 Ga0436365_0775556_21464_22687 391
99 3300046522 Ga0495643_0000556 Ga0495643_0000556_31458_32702 391
100 3300053108 Ga0500562_000140 Ga0500562_000140_17576_18787 391
101 iso_pu_bacteria 2721755607 2723250778 391
102 3300002773 JGI25152J39213_1000452 JGI25152J39213_100045219 392
103 3300002774 JGI25150J39212_1000358 JGI25150J39212_100035820 392
104 3300003187 JGI25151J46595_10000848 JGI25151J46595_100008485 392
105 3300003215 JGI25153J46596_10000585 JGI25153J46596_100005854 392
106 3300005288 Ga0065714_10068695 Ga0065714_100686952 392
107 3300005563 Ga0068855_100003674 Ga0068855_10000367414 392
108 3300013100 Ga0157373_10146776 Ga0157373_101467761 392
109 3300025245 Ga0207425_1000477 Ga0207425_100047717 392
110 3300025258 Ga0209129_1000101 Ga0209129_1000101135 392
111 3300025294 Ga0209025_1000048 Ga0209025_1000048111 392
112 3300025297 Ga0209758_1000056 Ga0209758_1000056111 392
113 3300046691 Ga0495670_0010163 Ga0495670_0010163_2789_3976 392
114 iso_pu_bacteria 2599185190 2599515170 392
115 iso_pu_bacteria 2599185290 2599894550 392
116 iso_pu_bacteria 2990196909 2990200162 392
117 iso_pu_bacteria 8056115690 8056120658 392
118 3300005288 Ga0065714_10066757 Ga0065714_100667575 393
119 3300005457 Ga0070662_100198182 Ga0070662_1001981822 393
120 3300005563 Ga0068855_100047631 Ga0068855_1000476312 393
121 3300006175 Ga0070712_100039754 Ga0070712_1000397543 393
122 3300009094 Ga0111539_10133453 Ga0111539_101334532 393
123 3300013104 Ga0157370_10002670 Ga0157370_100026708 393
124 3300021361 Ga0213872_10000483 Ga0213872_100004836 393
125 3300025915 Ga0207693_10054615 Ga0207693_100546152 393
126 3300025949 Ga0207667_10057026 Ga0207667_100570262 393
127 3300027907 Ga0207428_10094501 Ga0207428_100945012 393
128 3300031235 Ga0265330_10000332 Ga0265330_1000033211 393
129 3300031238 Ga0265332_10000008 Ga0265332_10000008155 393
130 3300031239 Ga0265328_10011025 Ga0265328_100110253 393
131 3300031250 Ga0265331_10002154 Ga0265331_1000215416 393
132 3300031711 Ga0265314_10000156 Ga0265314_1000015611 393
133 3300038726 Ga0400490_12895 Ga0400490_12895_201_1388 393
134 3300039447 Ga0436361_0441322 Ga0436361_0441322_22942_24126 393
135 3300041411 Ga0439466_0002943 Ga0439466_0002943_1588_2769 393
136 3300044712 Ga0453684_0000296 Ga0453684_0000296_70305_71498 393
137 3300045051 Ga0451576_0063970 Ga0451576_0063970_649_1854 393
138 3300046453 Ga0495627_002090 Ga0495627_002090_8452_9633 393
139 3300046491 Ga0495584_0003324 Ga0495584_0003324_7026_8207 393
140 3300046500 Ga0495596_0003357 Ga0495596_0003357_1773_2972 393
141 3300046501 Ga0495607_0104551 Ga0495607_0104551_309_1490 393
142 3300046520 Ga0495637_0014996 Ga0495637_0014996_169_1350 393
143 3300046680 Ga0495646_0031701 Ga0495646_0031701_488_1684 393
144 3300047443 Ga0495687_000049 Ga0495687_000049_165023_166219 393
145 3300048091 Ga0495626_0033993 Ga0495626_0033993_95_1276 393
146 3300048906 Ga0496103_0039591 Ga0496103_0039591_119_1318 393
147 3300050511 nmdc:mga08y16_110602_c1 nmdc:mga08y16_110602_c1_760_1944 393
148 2124908027 MRS2a_Contig_1661 MRS2a_00522780 396
149 3300005288 Ga0065714_10002929 Ga0065714_100029292 396
150 3300009545 Ga0105237_10001451 Ga0105237_1000145115 396
151 3300013100 Ga0157373_10003796 Ga0157373_100037964 396
152 3300013104 Ga0157370_10009931 Ga0157370_100099314 396
153 3300013105 Ga0157369_10084968 Ga0157369_100849682 396
154 3300014497 Ga0182008_10002297 Ga0182008_100022975 396
155 3300015262 Ga0182007_10001439 Ga0182007_100014395 396
156 3300017792 Ga0163161_10054453 Ga0163161_100544532 396
157 3300025914 Ga0207671_10000897 Ga0207671_1000089717 396
158 3300041405 Ga0439438_008520 Ga0439438_008520_265_1455 396
159 3300041407 Ga0439447_007255 Ga0439447_007255_368_1558 396
160 3300041411 Ga0439466_0000567 Ga0439466_0000567_3537_4727 396
161 3300042006 Ga0439432_003022 Ga0439432_003022_2596_3786 396
162 3300046458 Ga0495591_000423 Ga0495591_000423_23089_24279 396
163 3300046491 Ga0495584_0001034 Ga0495584_0001034_1759_2949 396
164 3300046506 Ga0495583_0003868 Ga0495583_0003868_8166_9356 396
165 3300046515 Ga0495620_0000007 Ga0495620_0000007_127943_129133 396
166 3300046519 Ga0495632_0003062 Ga0495632_0003062_2980_4170 396
167 3300046524 Ga0495648_0000620 Ga0495648_0000620_9430_10620 396
168 3300046524 Ga0495648_0003169 Ga0495648_0003169_4747_5937 396
169 3300046694 Ga0495649_0006592 Ga0495649_0006592_82_1272 396
170 3300048927 Ga0496124_0006080 Ga0496124_0006080_7425_8615 396
171 3300049459 Ga0495678_019816 Ga0495678_019816_1165_2355 396

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13455

MUG113

Meiotically up-regulated gene 113

292

380

0.95

PF10544

T5orf172

T5orf172 domain

270

381

0.9

Feature Viewer

pLDDT pTM Quality
77.12 0.38 Low
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Predicted Structure (AlphaFold2)

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