F257724

General Info

Members Datasets Scaffolds Average Seq Length
170 125 340 410

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2515154155|2515855620
Length 439
Sequence DRIHGRWVIPRSDRSRQRETFAGCVGLMTAVDIIDAEVRETVRREGLDPLKEPGAVRRMVDQAILRYDERTLVQTLPSLGDPREVAREVFNAIAGFGPLQKYLDDQTIEEIWINEPSKVFIARNGRSELTTTVLTSDEVRDLVERMLKTTGRRIDFSTPFVDAMLPDGSRLHVVIPDITRTHWAVNIRKFVVRATHLEDLVSLGTLSAQGAQFLEACVVAGLNVLVAGGTQAGKTTLLNCLGAAVPPRERIISCEEVFELKIPLPDWVPLQTRQSNLEGTGEIRLRNLVKEALRMRPSRIIVGEVRAEECLDLLIALNSGLPGMCTIHANSAREAITKMCTLPLLAGENIGSRFVVPTVAGAVDIVVHTQLIESGRRRVREICAVPGRVEGDIVELEPIFVLRGDRLVRAEGYPPHPDRFERIGYDLARLLAPRFEGVA

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
57 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
58 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
59 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
60 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
61 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
62 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
66 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
67 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
68 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
69 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
70 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
71 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
74 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
75 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
76 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
77 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
78 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
79 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
80 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
81 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
82 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
83 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
97 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
98 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
99 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
102 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
103 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
104 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
109 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
110 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
111 2643221604 Nocardioides sp. Root190 Isolate Unclassified
112 2643221617 Nocardioides sp. Root79 Isolate Unclassified
113 2643221620 Nocardioides sp. Root240 Isolate Unclassified
114 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
115 2643221679 Angustibacter sp. Root456 Isolate Unclassified
116 2643221711 Terrabacter sp. Root85 Isolate Unclassified
117 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
118 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
119 2738541305 Nocardioides sp. CF167 Isolate Unclassified
120 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
121 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
122 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
123 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
124 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
125 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90
Metatranscriptomes 0
Isolates 10

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.71
Nodule 0
Rhizoplane 8.82
Rhizosphere 75.88
Stem 0
Stem Tuber 0
Unclassified 0.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100128660 3300005329 Bacteria 2395
2 Ga0068869_100027796 3300005334 Bacteria 3947
3 Ga0070666_10005693 3300005335 Bacteria 7642
4 Ga0070680_100005007 3300005336 Bacteria 9988
5 Ga0070682_100001993 3300005337 Bacteria 11387
6 Ga0070660_100115687 3300005339 Bacteria 2138
7 Ga0070671_100049352 3300005355 Bacteria 3502
8 Ga0070659_100000727 3300005366 Bacteria 23939
9 Ga0070659_100006302 3300005366 Bacteria 8574
10 Ga0070667_100019086 3300005367 Bacteria 5686
11 Ga0070705_100011176 3300005440 Bacteria 4522
12 Ga0070681_10005813 3300005458 Bacteria 11938
13 Ga0070679_100013637 3300005530 Bacteria 7785
14 Ga0070684_100000939 3300005535 Bacteria 20742
15 Ga0070684_100226645 3300005535 Bacteria 1706
16 Ga0070696_100004682 3300005546 Bacteria 9141
17 Ga0070693_100140036 3300005547 Bacteria 1522
18 Ga0068855_100279251 3300005563 Bacteria 1855
19 Ga0068857_100003785 3300005577 Bacteria 12722
20 Ga0070702_100010655 3300005615 Bacteria 4540
21 Ga0068858_100049938 3300005842 Bacteria 3873
22 Ga0068858_100057120 3300005842 Bacteria 3607
23 Ga0068860_100000017 3300005843 Bacteria 307083
24 Ga0081539_10000503 3300005985 Bacteria 81931
25 Ga0075365_10003960 3300006038 Bacteria 7757
26 Ga0075368_10000335 3300006042 Bacteria 13793
27 Ga0075364_10038932 3300006051 Bacteria 3081
28 Ga0075429_100071621 3300006880 Bacteria 3018
29 Ga0114129_10001574 3300009147 Bacteria 30996
30 Ga0105243_10020074 3300009148 Bacteria 5066
31 Ga0105243_10032915 3300009148 Bacteria 4007
32 Ga0105248_10242699 3300009177 Bacteria 2028
33 Ga0105237_10013973 3300009545 Bacteria 8402
34 Ga0105030_100947 3300009987 Bacteria 2583
35 Ga0105239_10002803 3300010375 Bacteria 21789
36 Ga0157369_10002436 3300013105 Bacteria 22359
37 Ga0157369_10015328 3300013105 Bacteria 8644
38 Ga0157369_10110811 3300013105 Bacteria 2917
39 Ga0157369_10132463 3300013105 Bacteria 2641
40 Ga0163162_10116295 3300013306 Bacteria 2775
41 Ga0163162_10157256 3300013306 Bacteria 2393
42 Ga0163162_10249607 3300013306 Bacteria 1906
43 Ga0157372_10097721 3300013307 Bacteria 3349
44 Ga0157372_10212536 3300013307 Bacteria 2242
45 Ga0163163_10336966 3300014325 Bacteria 1563
46 Ga0207688_10073988 3300025901 Bacteria 1937
47 Ga0207680_10072676 3300025903 Bacteria 2136
48 Ga0207705_10055991 3300025909 Bacteria 2843
49 Ga0207707_10011101 3300025912 Bacteria 7833
50 Ga0207671_10066879 3300025914 Bacteria 2675
51 Ga0207660_10018670 3300025917 Bacteria 4627
52 Ga0207657_10036890 3300025919 Bacteria 4372
53 Ga0207657_10119278 3300025919 Bacteria 2171
54 Ga0207652_10010764 3300025921 Bacteria 7366
55 Ga0207687_10020998 3300025927 Bacteria 4336
56 Ga0207687_10121226 3300025927 Bacteria 1956
57 Ga0207687_10187046 3300025927 Bacteria 1609
58 Ga0207644_10032314 3300025931 Bacteria 3651
59 Ga0207690_10000420 3300025932 Bacteria 27642
60 Ga0207690_10008984 3300025932 Bacteria 5931
61 Ga0207689_10039878 3300025942 Bacteria 3887
62 Ga0207712_10026413 3300025961 Bacteria 3868
63 Ga0207658_10008156 3300025986 Bacteria 7134
64 Ga0207703_10052648 3300026035 Bacteria 3307
65 Ga0207703_10086116 3300026035 Bacteria 2631
66 Ga0207702_10179021 3300026078 Bacteria 1951
67 Ga0207674_10007945 3300026116 Bacteria 12316
68 Ga0207683_10005443 3300026121 Bacteria 10905
69 Ga0207683_10072128 3300026121 Bacteria 3054
70 Ga0268266_10008214 3300028379 Bacteria 9304
71 Ga0268266_10369523 3300028379 Bacteria 1351
72 Ga0268264_10000033 3300028381 Bacteria 404123
73 Ga0307515_10089791 3300028794 Bacteria 3863
74 Ga0307513_10001160 3300031456 Bacteria 38156
75 Ga0316578_10033889 3300031728 Bacteria 2929
76 Ga0307412_10062383 3300031911 Bacteria 2510
77 Ga0307409_100011188 3300031995 Bacteria 5639
78 Ga0307409_100128619 3300031995 Bacteria 2160
79 Ga0307416_100294523 3300032002 Bacteria 1609
80 Ga0316582_0130243 3300036647 Unclassified 1689
81 Ga0395898_0002677 3300037466 Bacteria 20653
82 Ga0395901_0006298 3300038443 Bacteria 12022
83 Ga0395901_0129763 3300038443 Bacteria 2648
84 Ga0395901_0219574 3300038443 Bacteria 1987
85 Ga0400485_07341 3300038735 Bacteria 9481
86 Ga0436363_0481417 3300039450 Bacteria 1964
87 Ga0451843_0208799 3300041509 Bacteria 2010
88 Ga0466965_0056551 3300044683 Bacteria 1954
89 Ga0466961_0017711 3300044693 Bacteria 4577
90 Ga0466961_0109415 3300044693 Bacteria 1739
91 Ga0466961_0115246 3300044693 Bacteria 1689
92 Ga0466963_0169735 3300044694 Bacteria 1520
93 Ga0466970_0012480 3300044765 Bacteria 4346
94 Ga0466970_0043968 3300044765 Bacteria 2378
95 Ga0466967_0336403 3300045976 Bacteria 1459
96 Ga0495638_0038134 3300046460 Bacteria 3056
97 Ga0495669_0003784 3300046684 Bacteria 6221
98 Ga0496101_0104063 3300048904 Bacteria 2128
99 Ga0496102_0001725 3300048905 Bacteria 19128
100 Ga0496102_0007936 3300048905 Bacteria 9073
101 Ga0496102_0125117 3300048905 Bacteria 2403
102 Ga0496103_0006793 3300048906 Bacteria 6829
103 Ga0496109_0027785 3300048912 Bacteria 5056
104 Ga0496110_0103686 3300048913 Bacteria 2551
105 Ga0496111_0078254 3300048914 Bacteria 2411
106 Ga0496111_0182660 3300048914 Bacteria 1559
107 Ga0496114_0005970 3300048917 Bacteria 9583
108 Ga0496114_0008621 3300048917 Bacteria 8081
109 Ga0496114_0040765 3300048917 Bacteria 3845
110 Ga0496114_0043460 3300048917 Bacteria 3726
111 Ga0496114_0058390 3300048917 Bacteria 3222
112 Ga0496114_0137664 3300048917 Bacteria 2112
113 Ga0496126_0003030 3300048929 Bacteria 21773
114 Ga0501031_0034358 3300049568 Bacteria 3308
115 Ga0501031_0037534 3300049568 Bacteria 3161
116 Ga0501032_0009574 3300049569 Bacteria 7024
117 Ga0501034_0091182 3300049571 Bacteria 3045
118 Ga0501036_0007010 3300049572 Bacteria 9175
119 Ga0501036_0065156 3300049572 Bacteria 3084
120 Ga0501038_0043864 3300049574 Bacteria 3888
121 Ga0501039_0057653 3300049575 Bacteria 3008
122 Ga0501040_0023230 3300049576 Bacteria 4157
123 Ga0501040_0102526 3300049576 Bacteria 1997
124 Ga0501040_0286849 3300049576 Bacteria 1176
125 Ga0501042_0020186 3300049578 Bacteria 4635
126 Ga0501043_0049859 3300049579 Bacteria 3291
127 Ga0501043_0084246 3300049579 Bacteria 2499
128 Ga0501046_0015765 3300049580 Bacteria 6344
129 Ga0501047_0031674 3300049581 Bacteria 5101
130 Ga0501071_0004821 3300049587 Bacteria 8595
131 Ga0501071_0064907 3300049587 Bacteria 2650
132 Ga0501074_0004401 3300049590 Bacteria 10069
133 Ga0501076_0048252 3300049592 Bacteria 3366
134 Ga0501079_0000216 3300049741 Bacteria 34014
135 Ga0501079_0018941 3300049741 Bacteria 5259
136 Ga0501079_0155218 3300049741 Bacteria 1784
137 Ga0501080_0000119 3300049742 Bacteria 55135
138 Ga0501080_0295735 3300049742 Bacteria 1469
139 Ga0501035_0023553 3300049822 Bacteria 5649
140 Ga0501035_0059421 3300049822 Bacteria 3404
141 Ga0501044_0137457 3300049823 Bacteria 2434
142 Ga0501045_0011034 3300049824 Bacteria 6333
143 Ga0501045_0043529 3300049824 Bacteria 3269
144 Ga0501045_0198286 3300049824 Bacteria 1496
145 nmdc:mga00v17_32175_c1 3300050491 Bacteria 3099
146 nmdc:mga04h51_3890_c1 3300050495 Bacteria 3673
147 nmdc:mga07m45_18779_c1 3300050496 Bacteria 3739
148 nmdc:mga05p37_17064_c1 3300050507 Bacteria 8757
149 nmdc:mga06r32_48292_c1 3300050510 Bacteria 4067
150 Ga0500616_0000136 3300053153 Bacteria 126636
151 Ga0500616_0004937 3300053153 Bacteria 9259
152 Ga0530510_0019409 3300061734 Bacteria 4825
153 Ga0530510_0151706 3300061734 Bacteria 1711
154 2515855620 2515154155 Bacteria 7985436
155 2643853029 2643221567 Bacteria 4163945
156 2644033841 2643221604 Bacteria 5014917
157 2644102785 2643221617 Bacteria 5139111
158 2644118447 2643221620 Bacteria 5134593
159 2644135518 2643221624 Bacteria 4384879
160 2644445939 2643221679 Bacteria 3839507
161 2644611315 2643221711 Bacteria 4865335
162 2676473403 2675903058 Bacteria 6822861
163 2731908417 2731639228 Bacteria 4187555
164 2738870501 2738541305 Bacteria 4910150
165 2799184661 2799112218 Bacteria 4315149
166 2808875084 2808606365 Bacteria 4301966
167 2812331677 2811994874 Bacteria 5367947
168 2819424418 2818991318 Bacteria 5266538
169 2827631913 2827628540 Bacteria 6858585
170 3001891989 3001889506 Bacteria 2975194
171 Ga0070683_100128660
172 Ga0068869_100027796
173 Ga0070666_10005693
174 Ga0070680_100005007
175 Ga0070682_100001993
176 Ga0070660_100115687
177 Ga0070671_100049352
178 Ga0070659_100000727
179 Ga0070659_100006302
180 Ga0070667_100019086
181 Ga0070705_100011176
182 Ga0070681_10005813
183 Ga0070679_100013637
184 Ga0070684_100000939
185 Ga0070684_100226645
186 Ga0070696_100004682
187 Ga0070693_100140036
188 Ga0068855_100279251
189 Ga0068857_100003785
190 Ga0070702_100010655
191 Ga0068858_100049938
192 Ga0068858_100057120
193 Ga0068860_100000017
194 Ga0081539_10000503
195 Ga0075365_10003960
196 Ga0075368_10000335
197 Ga0075364_10038932
198 Ga0075429_100071621
199 Ga0114129_10001574
200 Ga0105243_10020074
201 Ga0105243_10032915
202 Ga0105248_10242699
203 Ga0105237_10013973
204 Ga0105030_100947
205 Ga0105239_10002803
206 Ga0157369_10002436
207 Ga0157369_10015328
208 Ga0157369_10110811
209 Ga0157369_10132463
210 Ga0163162_10116295
211 Ga0163162_10157256
212 Ga0163162_10249607
213 Ga0157372_10097721
214 Ga0157372_10212536
215 Ga0163163_10336966
216 Ga0207688_10073988
217 Ga0207680_10072676
218 Ga0207705_10055991
219 Ga0207707_10011101
220 Ga0207671_10066879
221 Ga0207660_10018670
222 Ga0207657_10036890
223 Ga0207657_10119278
224 Ga0207652_10010764
225 Ga0207687_10020998
226 Ga0207687_10121226
227 Ga0207687_10187046
228 Ga0207644_10032314
229 Ga0207690_10000420
230 Ga0207690_10008984
231 Ga0207689_10039878
232 Ga0207712_10026413
233 Ga0207658_10008156
234 Ga0207703_10052648
235 Ga0207703_10086116
236 Ga0207702_10179021
237 Ga0207674_10007945
238 Ga0207683_10005443
239 Ga0207683_10072128
240 Ga0268266_10008214
241 Ga0268266_10369523
242 Ga0268264_10000033
243 Ga0307515_10089791
244 Ga0307513_10001160
245 Ga0316578_10033889
246 Ga0307412_10062383
247 Ga0307409_100011188
248 Ga0307409_100128619
249 Ga0307416_100294523
250 Ga0316582_0130243
251 Ga0395898_0002677
252 Ga0395901_0006298
253 Ga0395901_0129763
254 Ga0395901_0219574
255 Ga0400485_07341
256 Ga0436363_0481417
257 Ga0451843_0208799
258 Ga0466965_0056551
259 Ga0466961_0017711
260 Ga0466961_0109415
261 Ga0466961_0115246
262 Ga0466963_0169735
263 Ga0466970_0012480
264 Ga0466970_0043968
265 Ga0466967_0336403
266 Ga0495638_0038134
267 Ga0495669_0003784
268 Ga0496101_0104063
269 Ga0496102_0001725
270 Ga0496102_0007936
271 Ga0496102_0125117
272 Ga0496103_0006793
273 Ga0496109_0027785
274 Ga0496110_0103686
275 Ga0496111_0078254
276 Ga0496111_0182660
277 Ga0496114_0005970
278 Ga0496114_0008621
279 Ga0496114_0040765
280 Ga0496114_0043460
281 Ga0496114_0058390
282 Ga0496114_0137664
283 Ga0496126_0003030
284 Ga0501031_0034358
285 Ga0501031_0037534
286 Ga0501032_0009574
287 Ga0501034_0091182
288 Ga0501036_0007010
289 Ga0501036_0065156
290 Ga0501038_0043864
291 Ga0501039_0057653
292 Ga0501040_0023230
293 Ga0501040_0102526
294 Ga0501040_0286849
295 Ga0501042_0020186
296 Ga0501043_0049859
297 Ga0501043_0084246
298 Ga0501046_0015765
299 Ga0501047_0031674
300 Ga0501071_0004821
301 Ga0501071_0064907
302 Ga0501074_0004401
303 Ga0501076_0048252
304 Ga0501079_0000216
305 Ga0501079_0018941
306 Ga0501079_0155218
307 Ga0501080_0000119
308 Ga0501080_0295735
309 Ga0501035_0023553
310 Ga0501035_0059421
311 Ga0501044_0137457
312 Ga0501045_0011034
313 Ga0501045_0043529
314 Ga0501045_0198286
315 nmdc:mga00v17_32175_c1
316 nmdc:mga04h51_3890_c1
317 nmdc:mga07m45_18779_c1
318 nmdc:mga05p37_17064_c1
319 nmdc:mga06r32_48292_c1
320 Ga0500616_0000136
321 Ga0500616_0004937
322 Ga0530510_0019409
323 Ga0530510_0151706
324 2515855620
325 2643853029
326 2644033841
327 2644102785
328 2644118447
329 2644135518
330 2644445939
331 2644611315
332 2676473403
333 2731908417
334 2738870501
335 2799184661
336 2808875084
337 2812331677
338 2819424418
339 2827631913
340 3001891989

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00437

T2SSE

Type II/IV secretion system protein

96

372

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bge-assembly1.cif.gz_A helicobacter pylori atpase, hp0525, in complex with 1g2 compound 0.8384 80 364
1nlz-assembly1.cif.gz_C crystal structure of unliganded traffic atpase of the type iv secretion system of helicobacter pylori 0.8186 81 364
1nlz-assembly1.cif.gz_E crystal structure of unliganded traffic atpase of the type iv secretion system of helicobacter pylori 0.8152 80 364
1nlz-assembly1.cif.gz_C crystal structure of unliganded traffic atpase of the type iv secretion system of helicobacter pylori 0.7811 81 364
1nlz-assembly1.cif.gz_E crystal structure of unliganded traffic atpase of the type iv secretion system of helicobacter pylori 0.7644 80 364
ID Description Score Start End Superfamily
af_P9WMT3_116_327_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9163 173 379 3.40.50.300
af_Q58191_267_406_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9051 178 302 3.40.50.300
2gzaB01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.8929 80 171 3.30.450.90
4ii7D01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase; 0.8909 78 171 3.30.450.370
af_P9WMT3_116_327_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8874 173 379 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7W0U3P0-F1-model_v4 Flp pilus assembly complex ATPase component TadA 0.9744 263 413 GO:0016887
AF-A0A7V9ITG9-F1-model_v4 Flp pilus assembly complex ATPase component TadA 0.9736 263 413 GO:0016887
AF-A0A1A9GMH4-F1-model_v4 Type II/IV secretion system protein 0.9702 9 171 GO:0016887
AF-A0A7Z8EK80-F1-model_v4 deleted 0.9695 177 414
AF-A0A6L6F4F2-F1-model_v4 CpaF family protein 0.9658 188 395 GO:0016887

Map