F256660

General Info

Members Datasets Scaffolds Average Seq Length
170 126 340 252

Family's Representative Sequence

Representative Sequence 3300009098|Ga0105245_10316162|Ga0105245_103161621
Length 297
Sequence MASSPFPRADVRARDKSYNISTSPARYQEAGTVTAPCLRAGRKQGDDVPTARSTRSREKPEQIADELRALIVSGQLEEGESLGREPDLVERFGVSRPSLREALRILEAEGLITVVRGVLGGVVAHQPNEKMTARTAALVLQARNVTLGDVHQARSMIEPAAVRVLATAPSKKAIDELTSLIAAQRAVIDDPEAFGHANARFHERLVELSGNQTIGIVAEMLNEIIARAVTAVSQTPSKRNSLPVRQRGIRSQERLLELIAIGASNDAEAHWRTHMDAVGKVMIGHMAKTVVDLLNHY

Samples

Sample ID Description Type Environment
1 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
2 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
3 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
4 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
35 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
60 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
61 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
62 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
63 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
64 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
65 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
66 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
67 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
68 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
69 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
70 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
71 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
74 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
75 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
76 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
77 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
78 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
82 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
91 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
92 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
102 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
111 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
112 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
113 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
114 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
115 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
116 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
117 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
118 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
121 2517572101 Frankia sp. DC12 Isolate Nodule
122 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
123 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
124 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
125 8002775197 Frankia nepalensis CN7 Isolate Nodule
126 8002784119 Frankia sp. AgB1.9 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 94.12
Metatranscriptomes 0
Isolates 5.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.29
Nodule 3.53
Rhizoplane 17.06
Rhizosphere 68.82
Stem 0
Stem Tuber 0
Unclassified 2.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105245_10316162 3300009098 Bacteria 1537
2 Ga0070671_100007650 3300005355 Bacteria 8638
3 Ga0070713_100009571 3300005436 Bacteria 6949
4 Ga0070711_100189655 3300005439 Bacteria 1579
5 Ga0070700_100428441 3300005441 Bacteria 1001
6 Ga0070708_100004513 3300005445 Bacteria 10953
7 Ga0070708_100095330 3300005445 Bacteria 2716
8 Ga0070708_100221599 3300005445 Bacteria 1774
9 Ga0068867_100601004 3300005459 Bacteria 959
10 Ga0070707_100023135 3300005468 Bacteria 5878
11 Ga0070699_100001586 3300005518 Bacteria 20766
12 Ga0070697_100284124 3300005536 Bacteria 1420
13 Ga0070665_100250186 3300005548 Bacteria 1773
14 Ga0068856_100218077 3300005614 Bacteria 1923
15 Ga0068859_100837967 3300005617 Bacteria 1006
16 Ga0068861_100104368 3300005719 Bacteria 2261
17 Ga0068863_100000457 3300005841 Bacteria 41642
18 Ga0068858_100055193 3300005842 Bacteria 3672
19 Ga0068860_100204139 3300005843 Bacteria 1916
20 Ga0068862_100443027 3300005844 Bacteria 1223
21 Ga0075363_100073717 3300006048 Bacteria 1858
22 Ga0075364_10004518 3300006051 Bacteria 8015
23 Ga0070715_10020814 3300006163 Bacteria 2534
24 Ga0075367_10162457 3300006178 Bacteria 1389
25 Ga0075370_10087909 3300006353 Bacteria 1791
26 Ga0075430_100000875 3300006846 Bacteria 23638
27 Ga0075431_100000393 3300006847 Bacteria 35138
28 Ga0075434_100334345 3300006871 Bacteria 1535
29 Ga0075429_100045043 3300006880 Bacteria 3838
30 Ga0097620_100837841 3300006931 Bacteria 1006
31 Ga0111539_10076021 3300009094 Bacteria 3955
32 Ga0111539_10086806 3300009094 Bacteria 3676
33 Ga0111539_10098493 3300009094 Bacteria 3434
34 Ga0105247_10218456 3300009101 Bacteria 1289
35 Ga0114129_10056046 3300009147 Bacteria 5523
36 Ga0114129_10378736 3300009147 Bacteria 1869
37 Ga0163162_10963558 3300013306 Unclassified 964
38 Ga0157375_10298954 3300013308 Bacteria 1773
39 Ga0157375_10799825 3300013308 Bacteria 1092
40 Ga0163163_10393268 3300014325 Bacteria 1444
41 Ga0163163_10751958 3300014325 Bacteria 1038
42 Ga0157379_10105752 3300014968 Bacteria 2526
43 Ga0157379_10179672 3300014968 Bacteria 1912
44 Ga0213876_10001171 3300021384 Bacteria 16573
45 Ga0207692_10016711 3300025898 Bacteria 3258
46 Ga0207642_10077525 3300025899 Bacteria 1603
47 Ga0207710_10105314 3300025900 Bacteria 1334
48 Ga0207647_10020702 3300025904 Bacteria 4406
49 Ga0207699_10064218 3300025906 Bacteria 2221
50 Ga0207645_10062183 3300025907 Bacteria 2385
51 Ga0207693_10094127 3300025915 Bacteria 2348
52 Ga0207663_10052127 3300025916 Bacteria 2551
53 Ga0207646_10015222 3300025922 Bacteria 7276
54 Ga0207644_10218541 3300025931 Bacteria 1509
55 Ga0207709_10300736 3300025935 Bacteria 1193
56 Ga0207704_10091655 3300025938 Bacteria 1998
57 Ga0207711_10382112 3300025941 Bacteria 1307
58 Ga0207703_10034486 3300026035 Bacteria 4016
59 Ga0207703_10510470 3300026035 Bacteria 1129
60 Ga0207702_10491169 3300026078 Unclassified 1196
61 Ga0207641_10000981 3300026088 Bacteria 29177
62 Ga0207648_10200153 3300026089 Bacteria 1771
63 Ga0207648_10304176 3300026089 Bacteria 1430
64 Ga0207675_100029223 3300026118 Bacteria 5137
65 Ga0207683_10260871 3300026121 Bacteria 1582
66 Ga0207428_10207541 3300027907 Bacteria 1473
67 Ga0207428_10237571 3300027907 Bacteria 1362
68 Ga0268266_10225565 3300028379 Bacteria 1724
69 Ga0268264_10405825 3300028381 Bacteria 1311
70 Ga0316575_10030818 3300031665 Bacteria 2098
71 Ga0316579_10229584 3300031691 Bacteria 898
72 Ga0316578_10093296 3300031728 Bacteria 1800
73 Ga0316578_10100198 3300031728 Bacteria 1736
74 Ga0316577_10004479 3300031733 Bacteria 7212
75 Ga0307415_100154135 3300032126 Bacteria 1772
76 Ga0316574_0016981 3300035398 Bacteria 4250
77 Ga0316574_0022913 3300035398 Bacteria 3723
78 Ga0373931_0023626 3300035691 Bacteria 3106
79 Ga0316582_0004375 3300036647 Bacteria 7123
80 Ga0316584_0017015 3300036712 Bacteria 5220
81 Ga0436365_1149052 3300039437 Bacteria 11795
82 Ga0451791_1114773 3300041451 Bacteria 889
83 Ga0451837_1315211 3300041494 Bacteria 1317
84 Ga0466963_0461263 3300044694 Bacteria 897
85 Ga0466967_0294894 3300045976 Bacteria 1559
86 Ga0495603_0212941 3300046455 Bacteria 1116
87 Ga0495583_0061842 3300046506 Bacteria 1669
88 Ga0495628_0030496 3300046516 Bacteria 4366
89 Ga0495628_0082823 3300046516 Bacteria 2492
90 Ga0495657_0176748 3300046675 Unclassified 1312
91 Ga0495680_0365762 3300047322 Bacteria 1002
92 Ga0496100_0014587 3300048903 Bacteria 4566
93 Ga0496101_0193220 3300048904 Bacteria 1571
94 Ga0496102_0009110 3300048905 Bacteria 8519
95 Ga0496102_0012384 3300048905 Bacteria 7380
96 Ga0496102_0136374 3300048905 Bacteria 2300
97 Ga0496102_0180127 3300048905 Bacteria 1991
98 Ga0496102_0346764 3300048905 Bacteria 1398
99 Ga0496102_0574259 3300048905 Bacteria 1050
100 Ga0496104_0012661 3300048907 Bacteria 7595
101 Ga0496104_0728875 3300048907 Bacteria 899
102 Ga0496104_0775944 3300048907 Bacteria 865
103 Ga0496105_0164354 3300048908 Bacteria 1821
104 Ga0496108_0472699 3300048911 Bacteria 1095
105 Ga0496109_0178307 3300048912 Bacteria 1995
106 Ga0496109_0367418 3300048912 Bacteria 1359
107 Ga0496109_0489542 3300048912 Bacteria 1161
108 Ga0496110_0225356 3300048913 Bacteria 1705
109 Ga0496110_0666341 3300048913 Unclassified 941
110 Ga0496111_0355571 3300048914 Bacteria 1084
111 Ga0496112_0191860 3300048915 Bacteria 2005
112 Ga0496112_0701111 3300048915 Bacteria 940
113 Ga0496114_0258262 3300048917 Bacteria 1534
114 Ga0496114_0281278 3300048917 Bacteria 1467
115 Ga0496114_0302564 3300048917 Bacteria 1412
116 Ga0496114_0368197 3300048917 Bacteria 1272
117 Ga0496115_0001852 3300048918 Bacteria 15124
118 Ga0496115_0027132 3300048918 Bacteria 4477
119 Ga0496115_0087018 3300048918 Bacteria 2550
120 Ga0496116_0000155 3300048919 Bacteria 140837
121 Ga0496117_0005518 3300048920 Bacteria 13248
122 Ga0496118_0001407 3300048921 Bacteria 36256
123 Ga0496126_0000022 3300048929 Bacteria 464393
124 Ga0501036_0030866 3300049572 Bacteria 4528
125 Ga0501038_0123583 3300049574 Bacteria 2132
126 Ga0501038_0183889 3300049574 Bacteria 1685
127 Ga0501040_0113163 3300049576 Bacteria 1899
128 Ga0501042_0013750 3300049578 Bacteria 5513
129 Ga0501043_0033400 3300049579 Bacteria 4048
130 Ga0501047_0006646 3300049581 Bacteria 10872
131 Ga0501048_0305844 3300049582 Bacteria 1131
132 Ga0501069_0000044 3300049585 Bacteria 75705
133 Ga0501070_0000001 3300049586 Bacteria 519187
134 Ga0501070_0002304 3300049586 Bacteria 16749
135 Ga0501070_0023271 3300049586 Bacteria 5189
136 Ga0501071_0066210 3300049587 Bacteria 2625
137 Ga0501073_0210020 3300049589 Bacteria 1345
138 Ga0501073_0357877 3300049589 Bacteria 1008
139 Ga0501074_0114077 3300049590 Bacteria 1933
140 Ga0501080_0167949 3300049742 Bacteria 2024
141 Ga0501044_0020508 3300049823 Bacteria 7059
142 nmdc:mga00v17_17652_c1 3300050491 Bacteria 4044
143 nmdc:mga05p37_14558_c1 3300050507 Bacteria 9445
144 nmdc:mga09592_538077_c1 3300050508 Bacteria 1004
145 nmdc:mga09592_552_c1 3300050508 Bacteria 28490
146 nmdc:mga0qj67_1187_c1 3300050509 Bacteria 18061
147 nmdc:mga06r32_148302_c1 3300050510 Bacteria 2323
148 nmdc:mga06r32_959_c1 3300050510 Bacteria 25765
149 nmdc:mga08y16_60987_c1 3300050511 Bacteria 3938
150 nmdc:mga08y16_85850_c1 3300050511 Bacteria 3280
151 Ga0495601_0024730 3300053077 Bacteria 3699
152 Ga0495601_0265162 3300053077 Bacteria 1121
153 Ga0495595_0010520 3300053084 Bacteria 3847
154 Ga0495619_0097816 3300053085 Bacteria 1995
155 Ga0495619_0167686 3300053085 Bacteria 1518
156 Ga0500566_0001013 3300053094 Bacteria 16187
157 Ga0500568_0000037 3300053139 Bacteria 135208
158 Ga0500616_0003502 3300053153 Bacteria 11935
159 Ga0500616_0005937 3300053153 Bacteria 8153
160 Ga0501084_0313812 3300054114 Bacteria 1324
161 2517759495 2517572101 Bacteria 6884336
162 2686535408 2684623035 Bacteria 8032739
163 2686538722 2684623035 Bacteria 8032739
164 2689991756 2687453743 Bacteria 8361025
165 2689991799 2687453743 Bacteria 8361025
166 2895887627 2895880812 Bacteria 11255272
167 2895890589 2895880812 Bacteria 11255272
168 8002780818 8002775197 Bacteria 10728764
169 8002786218 8002784119 Bacteria 9788632
170 8002791832 8002784119 Bacteria 9788632
171 Ga0105245_10316162
172 Ga0070671_100007650
173 Ga0070713_100009571
174 Ga0070711_100189655
175 Ga0070700_100428441
176 Ga0070708_100004513
177 Ga0070708_100095330
178 Ga0070708_100221599
179 Ga0068867_100601004
180 Ga0070707_100023135
181 Ga0070699_100001586
182 Ga0070697_100284124
183 Ga0070665_100250186
184 Ga0068856_100218077
185 Ga0068859_100837967
186 Ga0068861_100104368
187 Ga0068863_100000457
188 Ga0068858_100055193
189 Ga0068860_100204139
190 Ga0068862_100443027
191 Ga0075363_100073717
192 Ga0075364_10004518
193 Ga0070715_10020814
194 Ga0075367_10162457
195 Ga0075370_10087909
196 Ga0075430_100000875
197 Ga0075431_100000393
198 Ga0075434_100334345
199 Ga0075429_100045043
200 Ga0097620_100837841
201 Ga0111539_10076021
202 Ga0111539_10086806
203 Ga0111539_10098493
204 Ga0105247_10218456
205 Ga0114129_10056046
206 Ga0114129_10378736
207 Ga0163162_10963558
208 Ga0157375_10298954
209 Ga0157375_10799825
210 Ga0163163_10393268
211 Ga0163163_10751958
212 Ga0157379_10105752
213 Ga0157379_10179672
214 Ga0213876_10001171
215 Ga0207692_10016711
216 Ga0207642_10077525
217 Ga0207710_10105314
218 Ga0207647_10020702
219 Ga0207699_10064218
220 Ga0207645_10062183
221 Ga0207693_10094127
222 Ga0207663_10052127
223 Ga0207646_10015222
224 Ga0207644_10218541
225 Ga0207709_10300736
226 Ga0207704_10091655
227 Ga0207711_10382112
228 Ga0207703_10034486
229 Ga0207703_10510470
230 Ga0207702_10491169
231 Ga0207641_10000981
232 Ga0207648_10200153
233 Ga0207648_10304176
234 Ga0207675_100029223
235 Ga0207683_10260871
236 Ga0207428_10207541
237 Ga0207428_10237571
238 Ga0268266_10225565
239 Ga0268264_10405825
240 Ga0316575_10030818
241 Ga0316579_10229584
242 Ga0316578_10093296
243 Ga0316578_10100198
244 Ga0316577_10004479
245 Ga0307415_100154135
246 Ga0316574_0016981
247 Ga0316574_0022913
248 Ga0373931_0023626
249 Ga0316582_0004375
250 Ga0316584_0017015
251 Ga0436365_1149052
252 Ga0451791_1114773
253 Ga0451837_1315211
254 Ga0466963_0461263
255 Ga0466967_0294894
256 Ga0495603_0212941
257 Ga0495583_0061842
258 Ga0495628_0030496
259 Ga0495628_0082823
260 Ga0495657_0176748
261 Ga0495680_0365762
262 Ga0496100_0014587
263 Ga0496101_0193220
264 Ga0496102_0009110
265 Ga0496102_0012384
266 Ga0496102_0136374
267 Ga0496102_0180127
268 Ga0496102_0346764
269 Ga0496102_0574259
270 Ga0496104_0012661
271 Ga0496104_0728875
272 Ga0496104_0775944
273 Ga0496105_0164354
274 Ga0496108_0472699
275 Ga0496109_0178307
276 Ga0496109_0367418
277 Ga0496109_0489542
278 Ga0496110_0225356
279 Ga0496110_0666341
280 Ga0496111_0355571
281 Ga0496112_0191860
282 Ga0496112_0701111
283 Ga0496114_0258262
284 Ga0496114_0281278
285 Ga0496114_0302564
286 Ga0496114_0368197
287 Ga0496115_0001852
288 Ga0496115_0027132
289 Ga0496115_0087018
290 Ga0496116_0000155
291 Ga0496117_0005518
292 Ga0496118_0001407
293 Ga0496126_0000022
294 Ga0501036_0030866
295 Ga0501038_0123583
296 Ga0501038_0183889
297 Ga0501040_0113163
298 Ga0501042_0013750
299 Ga0501043_0033400
300 Ga0501047_0006646
301 Ga0501048_0305844
302 Ga0501069_0000044
303 Ga0501070_0000001
304 Ga0501070_0002304
305 Ga0501070_0023271
306 Ga0501071_0066210
307 Ga0501073_0210020
308 Ga0501073_0357877
309 Ga0501074_0114077
310 Ga0501080_0167949
311 Ga0501044_0020508
312 nmdc:mga00v17_17652_c1
313 nmdc:mga05p37_14558_c1
314 nmdc:mga09592_538077_c1
315 nmdc:mga09592_552_c1
316 nmdc:mga0qj67_1187_c1
317 nmdc:mga06r32_148302_c1
318 nmdc:mga06r32_959_c1
319 nmdc:mga08y16_60987_c1
320 nmdc:mga08y16_85850_c1
321 Ga0495601_0024730
322 Ga0495601_0265162
323 Ga0495595_0010520
324 Ga0495619_0097816
325 Ga0495619_0167686
326 Ga0500566_0001013
327 Ga0500568_0000037
328 Ga0500616_0003502
329 Ga0500616_0005937
330 Ga0501084_0313812
331 2517759495
332 2686535408
333 2686538722
334 2689991756
335 2689991799
336 2895887627
337 2895890589
338 8002780818
339 8002786218
340 8002791832

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

59

120

0.97

PF07729

FCD

FCD domain

149

277

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
5d4s-assembly1.cif.gz_B crystal structure of arar(dbd) in complex with operator orx1 0.9285 13 79
5d4r-assembly1.cif.gz_A crystal structure of arar(dbd) in complex with operator ore1 0.9278 13 79
4egz-assembly1.cif.gz_B crystal structure of arar(dbd) in complex with operator orr3 0.9236 14 79
4h0e-assembly1.cif.gz_A crystal structure of mutant orr3 in complex with ntd of arar 0.9205 13 79
3tqn-assembly1.cif.gz_C structure of the transcriptional regulator of the gntr family, from coxiella burnetii. 0.8832 12 80
ID Description Score Start End Superfamily
af_P9WMG5_6_82_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9495 10 81 1.10.10.10
5d4rA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9278 13 79 1.10.10.10
5d4sA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9252 13 79 1.10.10.10
4egzB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9236 14 79 1.10.10.10
af_Q2G0T8_1_76_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9104 10 83 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1S0YMH7-F1-model_v4 HTH gntR-type domain-containing protein 0.9168 12 81 GO:0003677
GO:0003700
GO:0045892
AF-B9TMY3-F1-model_v4 GntR C-terminal domain-containing protein 0.8884 79 250 GO:0003677
AF-S5SWG4-F1-model_v4 Transcriptional regulator 0.8836 5 80 GO:0003677
GO:0003700
GO:0045892
AF-A0A1H2KXG4-F1-model_v4 GntR family transcriptional regulator 0.8607 5 79 GO:0003677
GO:0003700
AF-B9TMY3-F1-model_v4 GntR C-terminal domain-containing protein 0.8604 79 250 GO:0003677

Map