F256333

General Info

Members Datasets Scaffolds Average Seq Length
170 119 340 629

Family's Representative Sequence

Representative Sequence 3300005518|Ga0070699_100000015|Ga0070699_100000015130
Length 740
Sequence VLLRGRCYDERSVFVNDSARGAYKNARVRIVGLPAFKCRRTSSKANRNDDAWTEHMILVIVFGDSKIESPIRRSFATGARVQNIFGMDSRLVTKAVCSTHFCERRISQNRMLATEMTGKLNYRNGLLEAYRDLYTPEALHALEALAPFNRDRRELMAKRIALRRSRELERRRISFLDPTNLIPRTGIRVQDARDGNFEGSEIPADLKRQWIQGTGPAARPRASVENGLRNVAYALLSGADGWMFDGEDALGQISTMALDNQRNLRLAIAKDPIFLRVAEEVSAEMNRWAQGFFGRPIVADWRAQLDFTTKIFRARGLHLDDRHIREAEGTGFSASIVDLVLYVVNNHKRLSDAGSSIVLYLPKIQTAEEAALWNDLLAALEQHLGLITGAIKAYVLVEQIEAVFQLMEIRAALGPHFVGFNTGRWDYINSVSDAMAWDPSFINPNIDAIGMTYGYMRNYEDRVRRAVNTPDRNGRFALWQGGMEPNIPVGSEAGVEEGMLRARAGGRREQVAGASGKWVAHWKMVHIVRPVWEEARADNQLGRAFPPLVYTSEDADGLVLLEPAPRTVRGARDLLSVALQYGNAFEQGFQAAALKPADFFGNDDVLYLMEDMATGEIRLSILWEWLHKAARLTDDDPETGAKAGDAFDAALFARLLEEEYAKLLTATDRDVHDDSKTTTLPIAREIVETYVTNRIKLPWYIDLLNLQLNNYHLDIARSRIRAYIEAFERDGTRITENLDF

Samples

Sample ID Description Type Environment
1 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
61 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
88 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
90 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
91 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
92 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
93 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
94 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
95 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
96 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
97 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
98 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
99 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
100 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
101 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
102 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
103 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
104 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
105 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
106 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
107 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
110 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
113 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
114 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
115 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
118 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
119 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.76
Nodule 0
Rhizoplane 1.76
Rhizosphere 96.47
Stem 0
Stem Tuber 0
Unclassified 2.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070699_100000015 3300005518 Bacteria 211169
2 JGI25406J46586_10000798 3300003203 Bacteria 14870
3 JGI25406J46586_10007608 3300003203 Bacteria 4932
4 JGI25406J46586_10008164 3300003203 Bacteria 4754
5 Ga0065712_10067782 3300005290 Bacteria 36753
6 Ga0065707_10093477 3300005295 Bacteria 3623
7 Ga0070683_100002550 3300005329 Bacteria 14549
8 Ga0070683_100025528 3300005329 Bacteria 5308
9 Ga0070690_100017603 3300005330 Bacteria 4301
10 Ga0070670_100028576 3300005331 Bacteria 4799
11 Ga0070670_100054538 3300005331 Bacteria 3432
12 Ga0070689_100035796 3300005340 Bacteria 3794
13 Ga0070687_100004497 3300005343 Bacteria 5564
14 Ga0070661_100006104 3300005344 Bacteria 8296
15 Ga0070669_100008329 3300005353 Bacteria 7401
16 Ga0070671_100033124 3300005355 Bacteria 4272
17 Ga0070673_100037933 3300005364 Bacteria 3676
18 Ga0070673_100065294 3300005364 Bacteria 2903
19 Ga0070673_100069896 3300005364 Bacteria 2816
20 Ga0070667_100047919 3300005367 Bacteria 3596
21 Ga0070703_10000804 3300005406 Bacteria 10268
22 Ga0070678_100018756 3300005456 Unclassified 4492
23 Ga0070706_100001155 3300005467 Bacteria 28401
24 Ga0070698_100052248 3300005471 Bacteria 4159
25 Ga0070698_100078450 3300005471 Bacteria 3301
26 Ga0070699_100000055 3300005518 Bacteria 110165
27 Ga0070699_100011449 3300005518 Bacteria 7660
28 Ga0070684_100005968 3300005535 Bacteria 9383
29 Ga0070672_100008514 3300005543 Bacteria 7023
30 Ga0070696_100000100 3300005546 Bacteria 43586
31 Ga0070664_100055161 3300005564 Bacteria 3373
32 Ga0068857_100051140 3300005577 Bacteria 3664
33 Ga0068852_100144503 3300005616 Bacteria 2205
34 Ga0068859_100000009 3300005617 Bacteria 380451
35 Ga0068859_100004276 3300005617 Bacteria 14583
36 Ga0068864_100077184 3300005618 Bacteria 2912
37 Ga0068864_100116187 3300005618 Bacteria 2387
38 Ga0068858_100022817 3300005842 Bacteria 5837
39 Ga0068860_100010297 3300005843 Bacteria 9250
40 Ga0068860_100034274 3300005843 Bacteria 4868
41 Ga0068860_100039461 3300005843 Bacteria 4516
42 Ga0068862_100124306 3300005844 Bacteria 2277
43 Ga0081539_10000074 3300005985 Bacteria 231435
44 Ga0081539_10000339 3300005985 Bacteria 103633
45 Ga0081539_10006078 3300005985 Bacteria 11804
46 Ga0075368_10020853 3300006042 Bacteria 2484
47 Ga0070716_100025722 3300006173 Bacteria 3145
48 Ga0075367_10026027 3300006178 Bacteria 3313
49 Ga0097621_100006974 3300006237 Bacteria 8046
50 Ga0068871_100000281 3300006358 Bacteria 35352
51 Ga0075428_100033720 3300006844 Bacteria 5650
52 Ga0075428_100040754 3300006844 Bacteria 5108
53 Ga0075430_100000633 3300006846 Bacteria 26769
54 Ga0075431_100003570 3300006847 Bacteria 15067
55 Ga0075431_100093095 3300006847 Bacteria 3111
56 Ga0075433_10001410 3300006852 Bacteria 17709
57 Ga0075433_10001826 3300006852 Bacteria 15988
58 Ga0075433_10061271 3300006852 Bacteria 3296
59 Ga0075434_100005794 3300006871 Bacteria 11277
60 Ga0075434_100016541 3300006871 Bacteria 7092
61 Ga0075434_100196936 3300006871 Bacteria 2034
62 Ga0075429_100032259 3300006880 Unclassified 4552
63 Ga0068865_100071657 3300006881 Bacteria 2459
64 Ga0075436_100019531 3300006914 Bacteria 4644
65 Ga0097620_100000009 3300006931 Bacteria 380451
66 Ga0097620_100003895 3300006931 Bacteria 15232
67 Ga0097620_100004276 3300006931 Bacteria 14583
68 Ga0075435_100009268 3300007076 Bacteria 7113
69 Ga0111539_10070329 3300009094 Bacteria 4132
70 Ga0111539_10124604 3300009094 Bacteria 3019
71 Ga0111539_10278580 3300009094 Bacteria 1946
72 Ga0114129_10013744 3300009147 Bacteria 11541
73 Ga0114129_10039075 3300009147 Bacteria 6691
74 Ga0114129_10061421 3300009147 Bacteria 5251
75 Ga0114129_10131682 3300009147 Bacteria 3434
76 Ga0105241_10079922 3300009174 Bacteria 2558
77 Ga0105248_10021312 3300009177 Bacteria 7182
78 Ga0105237_10033890 3300009545 Bacteria 5173
79 Ga0105249_10003921 3300009553 Bacteria 12851
80 Ga0105249_10076729 3300009553 Bacteria 3098
81 Ga0105249_10118540 3300009553 Bacteria 2512
82 Ga0157369_10023681 3300013105 Bacteria 6838
83 Ga0157378_10010448 3300013297 Bacteria 8108
84 Ga0157378_10068319 3300013297 Bacteria 3187
85 Ga0163162_10004584 3300013306 Bacteria 13311
86 Ga0157375_10001337 3300013308 Bacteria 21245
87 Ga0157375_10003872 3300013308 Bacteria 12988
88 Ga0157375_10020203 3300013308 Bacteria 6078
89 Ga0157375_10063827 3300013308 Bacteria 3666
90 Ga0163163_10004375 3300014325 Bacteria 12034
91 Ga0157380_10001660 3300014326 Bacteria 14669
92 Ga0157380_10002579 3300014326 Bacteria 12249
93 Ga0157379_10007618 3300014968 Bacteria 9372
94 Ga0157376_10000260 3300014969 Bacteria 35986
95 Ga0163161_10007518 3300017792 Bacteria 7530
96 Ga0207653_10000186 3300025885 Bacteria 42876
97 Ga0207682_10007158 3300025893 Bacteria 4463
98 Ga0207682_10033759 3300025893 Bacteria 2061
99 Ga0207710_10002374 3300025900 Bacteria 8792
100 Ga0207645_10042595 3300025907 Bacteria 2905
101 Ga0207643_10010355 3300025908 Bacteria 5021
102 Ga0207643_10015915 3300025908 Bacteria 4097
103 Ga0207684_10000101 3300025910 Bacteria 162786
104 Ga0207684_10132046 3300025910 Bacteria 2143
105 Ga0207662_10002949 3300025918 Bacteria 8646
106 Ga0207652_10000023 3300025921 Bacteria 158556
107 Ga0207646_10062184 3300025922 Bacteria 3333
108 Ga0207681_10002053 3300025923 Bacteria 12928
109 Ga0207650_10021707 3300025925 Bacteria 4539
110 Ga0207650_10053694 3300025925 Bacteria 2987
111 Ga0207659_10001699 3300025926 Bacteria 13050
112 Ga0207659_10117363 3300025926 Bacteria 2034
113 Ga0207687_10067471 3300025927 Bacteria 2545
114 Ga0207644_10011136 3300025931 Bacteria 5941
115 Ga0207706_10004897 3300025933 Bacteria 12524
116 Ga0207670_10050525 3300025936 Bacteria 2787
117 Ga0207691_10011246 3300025940 Bacteria 8588
118 Ga0207691_10016194 3300025940 Bacteria 7080
119 Ga0207691_10022960 3300025940 Bacteria 5876
120 Ga0207711_10059794 3300025941 Bacteria 3281
121 Ga0207689_10035953 3300025942 Bacteria 4112
122 Ga0207661_10092028 3300025944 Bacteria 2528
123 Ga0207651_10025391 3300025960 Bacteria 3682
124 Ga0207658_10034193 3300025986 Bacteria 3631
125 Ga0207708_10019869 3300026075 Bacteria 5064
126 Ga0207676_10113049 3300026095 Bacteria 2276
127 Ga0207674_10035804 3300026116 Bacteria 5179
128 Ga0207674_10088822 3300026116 Bacteria 3083
129 Ga0207683_10063619 3300026121 Bacteria 3250
130 Ga0207683_10089329 3300026121 Bacteria 2742
131 Ga0207428_10046849 3300027907 Bacteria 3474
132 Ga0268264_10003686 3300028381 Bacteria 13142
133 Ga0268264_10008732 3300028381 Bacteria 8411
134 Ga0268264_10063002 3300028381 Bacteria 3116
135 Ga0307405_10005247 3300031731 Bacteria 6229
136 Ga0307413_10055267 3300031824 Bacteria 2414
137 Ga0307410_10003272 3300031852 Bacteria 8089
138 Ga0307407_10030899 3300031903 Bacteria 2895
139 Ga0307412_10052525 3300031911 Bacteria 2699
140 Ga0307409_100000917 3300031995 Bacteria 13676
141 Ga0307416_100038690 3300032002 Bacteria 3682
142 Ga0307411_10018695 3300032005 Bacteria 3983
143 Ga0307415_100009129 3300032126 Bacteria 5539
144 Ga0373957_0021570 3300035120 Bacteria 2288
145 Ga0451577_0026158 3300042876 Bacteria 5285
146 Ga0495638_0068320 3300046460 Bacteria 2180
147 Ga0495580_0008577 3300046472 Bacteria 8110
148 Ga0495630_0000001 3300046517 Bacteria 1687293
149 Ga0495587_0020204 3300046536 Bacteria 4113
150 Ga0495623_0028223 3300046679 Bacteria 3611
151 Ga0495672_0062382 3300047320 Bacteria 2144
152 Ga0496101_0047051 3300048904 Unclassified 3096
153 Ga0496109_0011341 3300048912 Bacteria 7657
154 Ga0496114_0017118 3300048917 Bacteria 5847
155 Ga0501072_0125436 3300049588 Bacteria 2045
156 Ga0501074_0044310 3300049590 Bacteria 3221
157 Ga0501044_0167829 3300049823 Bacteria 2168
158 Ga0501045_0031427 3300049824 Bacteria 3846
159 nmdc:mga05p37_1363_c1 3300050507 Bacteria 28411
160 nmdc:mga05p37_138234_c1 3300050507 Bacteria 2986
161 nmdc:mga05p37_157909_c1 3300050507 Bacteria 2771
162 nmdc:mga09592_31939_c1 3300050508 Bacteria 4388
163 nmdc:mga0qj67_20097_c1 3300050509 Bacteria 5111
164 nmdc:mga06r32_114819_c1 3300050510 Unclassified 2651
165 nmdc:mga08y16_155192_c1 3300050511 Bacteria 2379
166 nmdc:mga08y16_212892_c1 3300050511 Bacteria 2001
167 nmdc:mga0a205_103693_c1 3300050515 Bacteria 2743
168 nmdc:mga0a205_5067_c1 3300050515 Bacteria 4139
169 nmdc:mga0a205_8664_c1 3300050515 Bacteria 9259
170 Ga0500568_0002087 3300053139 Bacteria 12112
171 Ga0070699_100000015
172 JGI25406J46586_10000798
173 JGI25406J46586_10007608
174 JGI25406J46586_10008164
175 Ga0065712_10067782
176 Ga0065707_10093477
177 Ga0070683_100002550
178 Ga0070683_100025528
179 Ga0070690_100017603
180 Ga0070670_100028576
181 Ga0070670_100054538
182 Ga0070689_100035796
183 Ga0070687_100004497
184 Ga0070661_100006104
185 Ga0070669_100008329
186 Ga0070671_100033124
187 Ga0070673_100037933
188 Ga0070673_100065294
189 Ga0070673_100069896
190 Ga0070667_100047919
191 Ga0070703_10000804
192 Ga0070678_100018756
193 Ga0070706_100001155
194 Ga0070698_100052248
195 Ga0070698_100078450
196 Ga0070699_100000055
197 Ga0070699_100011449
198 Ga0070684_100005968
199 Ga0070672_100008514
200 Ga0070696_100000100
201 Ga0070664_100055161
202 Ga0068857_100051140
203 Ga0068852_100144503
204 Ga0068859_100000009
205 Ga0068859_100004276
206 Ga0068864_100077184
207 Ga0068864_100116187
208 Ga0068858_100022817
209 Ga0068860_100010297
210 Ga0068860_100034274
211 Ga0068860_100039461
212 Ga0068862_100124306
213 Ga0081539_10000074
214 Ga0081539_10000339
215 Ga0081539_10006078
216 Ga0075368_10020853
217 Ga0070716_100025722
218 Ga0075367_10026027
219 Ga0097621_100006974
220 Ga0068871_100000281
221 Ga0075428_100033720
222 Ga0075428_100040754
223 Ga0075430_100000633
224 Ga0075431_100003570
225 Ga0075431_100093095
226 Ga0075433_10001410
227 Ga0075433_10001826
228 Ga0075433_10061271
229 Ga0075434_100005794
230 Ga0075434_100016541
231 Ga0075434_100196936
232 Ga0075429_100032259
233 Ga0068865_100071657
234 Ga0075436_100019531
235 Ga0097620_100000009
236 Ga0097620_100003895
237 Ga0097620_100004276
238 Ga0075435_100009268
239 Ga0111539_10070329
240 Ga0111539_10124604
241 Ga0111539_10278580
242 Ga0114129_10013744
243 Ga0114129_10039075
244 Ga0114129_10061421
245 Ga0114129_10131682
246 Ga0105241_10079922
247 Ga0105248_10021312
248 Ga0105237_10033890
249 Ga0105249_10003921
250 Ga0105249_10076729
251 Ga0105249_10118540
252 Ga0157369_10023681
253 Ga0157378_10010448
254 Ga0157378_10068319
255 Ga0163162_10004584
256 Ga0157375_10001337
257 Ga0157375_10003872
258 Ga0157375_10020203
259 Ga0157375_10063827
260 Ga0163163_10004375
261 Ga0157380_10001660
262 Ga0157380_10002579
263 Ga0157379_10007618
264 Ga0157376_10000260
265 Ga0163161_10007518
266 Ga0207653_10000186
267 Ga0207682_10007158
268 Ga0207682_10033759
269 Ga0207710_10002374
270 Ga0207645_10042595
271 Ga0207643_10010355
272 Ga0207643_10015915
273 Ga0207684_10000101
274 Ga0207684_10132046
275 Ga0207662_10002949
276 Ga0207652_10000023
277 Ga0207646_10062184
278 Ga0207681_10002053
279 Ga0207650_10021707
280 Ga0207650_10053694
281 Ga0207659_10001699
282 Ga0207659_10117363
283 Ga0207687_10067471
284 Ga0207644_10011136
285 Ga0207706_10004897
286 Ga0207670_10050525
287 Ga0207691_10011246
288 Ga0207691_10016194
289 Ga0207691_10022960
290 Ga0207711_10059794
291 Ga0207689_10035953
292 Ga0207661_10092028
293 Ga0207651_10025391
294 Ga0207658_10034193
295 Ga0207708_10019869
296 Ga0207676_10113049
297 Ga0207674_10035804
298 Ga0207674_10088822
299 Ga0207683_10063619
300 Ga0207683_10089329
301 Ga0207428_10046849
302 Ga0268264_10003686
303 Ga0268264_10008732
304 Ga0268264_10063002
305 Ga0307405_10005247
306 Ga0307413_10055267
307 Ga0307410_10003272
308 Ga0307407_10030899
309 Ga0307412_10052525
310 Ga0307409_100000917
311 Ga0307416_100038690
312 Ga0307411_10018695
313 Ga0307415_100009129
314 Ga0373957_0021570
315 Ga0451577_0026158
316 Ga0495638_0068320
317 Ga0495580_0008577
318 Ga0495630_0000001
319 Ga0495587_0020204
320 Ga0495623_0028223
321 Ga0495672_0062382
322 Ga0496101_0047051
323 Ga0496109_0011341
324 Ga0496114_0017118
325 Ga0501072_0125436
326 Ga0501074_0044310
327 Ga0501044_0167829
328 Ga0501045_0031427
329 nmdc:mga05p37_1363_c1
330 nmdc:mga05p37_138234_c1
331 nmdc:mga05p37_157909_c1
332 nmdc:mga09592_31939_c1
333 nmdc:mga0qj67_20097_c1
334 nmdc:mga06r32_114819_c1
335 nmdc:mga08y16_155192_c1
336 nmdc:mga08y16_212892_c1
337 nmdc:mga0a205_103693_c1
338 nmdc:mga0a205_5067_c1
339 nmdc:mga0a205_8664_c1
340 Ga0500568_0002087

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01274

MS_TIM-barrel

Malate synthase, TIM barrel domain

309

546

0.93

PF20659

MS_C

Malate synthase, C-terminal

566

703

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cux-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.9111 6 586
3cv2-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.9092 6 594
3cv2-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.9025 6 594
3cux-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.8935 6 586
3qqw-assembly1.cif.gz_B crystal structure of a putative lyase (reut_b4148) from ralstonia eutropha jmp134 at 2.44 a resolution 0.7546 83 417
ID Description Score Start End Superfamily
3cuxA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Malate synthase, domain 3 0.8994 6 450 3.20.20.360
3cuxA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Malate synthase, domain 3 0.8948 6 450 3.20.20.360
af_A0A0R4IAX5_7_408_3.20.20.360 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Malate synthase, domain 3 0.8764 7 450 3.20.20.360
3cv2A02 Mainly Alpha;Up-down Bundle;Malate Synthase G; Chain: A; Domain 4;Malate synthase, domain III 0.8741 452 594 1.20.1220.12
af_A0A0R4IAX5_7_408_3.20.20.360 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Malate synthase, domain 3 0.866 7 450 3.20.20.360
ID Description Score Start End GO Terms
AF-A0A6N9XW18-F1-model_v4 deleted 0.9964 247 322
AF-A0A7W0QPD9-F1-model_v4 malate synthase (EC 2.3.3.9) 0.9931 6 626 GO:0004474
GO:0005782
GO:0006097
GO:0006099
AF-A0A7Z9R7W4-F1-model_v4 deleted 0.9912 6 556
AF-A0A7X4AXP5-F1-model_v4 deleted 0.9905 91 626
AF-A0A0K2QXZ3-F1-model_v4 deleted 0.9905 224 322

Map