F256301

General Info

Members Datasets Scaffolds Average Seq Length
170 115 340 216

Family's Representative Sequence

Representative Sequence 3300005458|Ga0070681_10072756|Ga0070681_100727562
Length 261
Sequence LVVRANCLDRRAAPHEAGGSQARSERTPLNSKRGCSILGEQGNHTVGQVRILLADDHTIIRSGLRLLLEQQPDFKVVAEASDGREAVELVSRHHPEVAVLDIGMPQLNGIEATKQIVSGEPRTRVVILSMHSDEGYVLRALKAGARAYILKNSAEADLIQAVRTVSEGKSFFSPVISKMLLEDYIRQIKDKEVEDSYDLLTPREREILQLLAEGRTNKEVANILKLSLYTVETHRGNILQKLNLHGVPELILYAVRKGIIQ

Samples

Sample ID Description Type Environment
1 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
22 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
64 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
68 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
69 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
70 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
71 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
72 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
73 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
74 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
75 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
76 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
77 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
78 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
79 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
80 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
81 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
82 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
85 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
86 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
87 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
89 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
90 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
91 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
92 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
93 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
94 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
95 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
96 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
97 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
98 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
99 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
100 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
101 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
102 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
103 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
104 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
105 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
106 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
107 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
108 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
109 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
110 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
111 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
112 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
113 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
114 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
115 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.41
Metatranscriptomes 0.59
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.18
Rhizosphere 95.29
Stem 0
Stem Tuber 0
Unclassified 16.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070681_10072756 3300005458 Bacteria 3400
2 Ga0070683_100127964 3300005329 Bacteria 2402
3 Ga0068868_100692184 3300005338 Bacteria 911
4 Ga0070689_100169400 3300005340 Bacteria 1769
5 Ga0070671_100234007 3300005355 Bacteria 1559
6 Ga0070703_10117701 3300005406 Unclassified 959
7 Ga0070714_100013665 3300005435 Bacteria 6512
8 Ga0070711_100169487 3300005439 Bacteria 1663
9 Ga0070681_10136338 3300005458 Bacteria 2385
10 Ga0070699_100719949 3300005518 Unclassified 912
11 Ga0070679_100661848 3300005530 Bacteria 987
12 Ga0070684_100000009 3300005535 Bacteria 209881
13 Ga0070697_100232926 3300005536 Unclassified 1571
14 Ga0068855_100019260 3300005563 Bacteria 8203
15 Ga0068854_100336807 3300005578 Bacteria 1231
16 Ga0068856_100032663 3300005614 Bacteria 5096
17 Ga0068859_100498983 3300005617 Bacteria 1312
18 Ga0068863_100094980 3300005841 Bacteria 2830
19 Ga0068858_100011080 3300005842 Bacteria 8526
20 Ga0068860_100203682 3300005843 Unclassified 1918
21 Ga0068860_100752232 3300005843 Bacteria 986
22 Ga0068860_101209014 3300005843 Bacteria 776
23 Ga0070717_10272620 3300006028 Bacteria 1499
24 Ga0070716_100148711 3300006173 Unclassified 1504
25 Ga0097621_100002922 3300006237 Bacteria 11740
26 Ga0097621_100078623 3300006237 Unclassified 2741
27 Ga0097621_100080606 3300006237 Bacteria 2708
28 Ga0097621_100207025 3300006237 Bacteria 1705
29 Ga0068871_100008353 3300006358 Bacteria 7445
30 Ga0068871_100026058 3300006358 Bacteria 4558
31 Ga0068871_100156826 3300006358 Bacteria 1944
32 Ga0068871_100560812 3300006358 Bacteria 1035
33 Ga0075428_100020060 3300006844 Bacteria 7402
34 Ga0075431_100007756 3300006847 Bacteria 10690
35 Ga0075431_100120955 3300006847 Bacteria 2702
36 Ga0075433_10187490 3300006852 Bacteria 1840
37 Ga0075429_100018025 3300006880 Bacteria 6106
38 Ga0075429_100171556 3300006880 Unclassified 1900
39 Ga0097620_100499068 3300006931 Bacteria 1312
40 Ga0099794_10001750 3300007265 Bacteria 7715
41 Ga0105240_10001426 3300009093 Bacteria 40915
42 Ga0105240_10010655 3300009093 Bacteria 12907
43 Ga0105240_10018294 3300009093 Bacteria 9418
44 Ga0114129_10003125 3300009147 Bacteria 23224
45 Ga0114129_10125762 3300009147 Bacteria 3525
46 Ga0105242_10756309 3300009176 Unclassified 957
47 Ga0105242_11038040 3300009176 Bacteria 830
48 Ga0105248_10121506 3300009177 Bacteria 2946
49 Ga0105237_10802031 3300009545 Bacteria 948
50 Ga0105246_10613145 3300011119 Bacteria 942
51 Ga0157370_10002534 3300013104 Bacteria 21961
52 Ga0157370_10131864 3300013104 Bacteria 2331
53 Ga0157369_10004310 3300013105 Bacteria 16805
54 Ga0157369_11259596 3300013105 Bacteria 754
55 Ga0157378_10171023 3300013297 Bacteria 2038
56 Ga0157372_10169649 3300013307 Bacteria 2524
57 Ga0157375_10967983 3300013308 Unclassified 992
58 Ga0163163_10011176 3300014325 Bacteria 8131
59 Ga0163163_11289012 3300014325 Bacteria 793
60 Ga0157380_10116279 3300014326 Unclassified 2257
61 Ga0157380_10141691 3300014326 Bacteria 2066
62 Ga0157376_10060828 3300014969 Unclassified 3173
63 Ga0157376_10075693 3300014969 Bacteria 2873
64 Ga0157376_10796722 3300014969 Unclassified 957
65 Ga0213875_10064391 3300021388 Bacteria 1713
66 Ga0207695_10003876 3300025913 Bacteria 20702
67 Ga0207695_10014112 3300025913 Bacteria 9483
68 Ga0207695_10034114 3300025913 Bacteria 5540
69 Ga0207695_10053253 3300025913 Unclassified 4233
70 Ga0207695_10152490 3300025913 Bacteria 2249
71 Ga0207671_10033765 3300025914 Unclassified 3805
72 Ga0207671_10037636 3300025914 Bacteria 3587
73 Ga0207663_10093107 3300025916 Bacteria 2005
74 Ga0207652_10559451 3300025921 Bacteria 1027
75 Ga0207646_11079514 3300025922 Bacteria 707
76 Ga0207687_10068568 3300025927 Bacteria 2527
77 Ga0207664_10005637 3300025929 Bacteria 8560
78 Ga0207686_10207400 3300025934 Unclassified 1407
79 Ga0207711_10074687 3300025941 Bacteria 2949
80 Ga0207711_10081215 3300025941 Bacteria 2833
81 Ga0207711_10150294 3300025941 Bacteria 2101
82 Ga0207661_10000057 3300025944 Bacteria 84248
83 Ga0207667_10003890 3300025949 Bacteria 18369
84 Ga0207640_10204544 3300025981 Bacteria 1499
85 Ga0207677_10245492 3300026023 Bacteria 1451
86 Ga0207703_10015910 3300026035 Bacteria 5867
87 Ga0207703_10213015 3300026035 Bacteria 1724
88 Ga0207702_10042948 3300026078 Bacteria 3793
89 Ga0207641_10078278 3300026088 Bacteria 2863
90 Ga0209588_1005599 3300027671 Bacteria 3609
91 Ga0268264_10180228 3300028381 Unclassified 1918
92 Ga0265318_10071071 3300028577 Unclassified 1290
93 Ga0265336_10042139 3300028666 Bacteria 1394
94 Ga0265338_10089313 3300028800 Bacteria 2554
95 Ga0265338_10106370 3300028800 Bacteria 2272
96 Ga0265338_10258448 3300028800 Bacteria 1281
97 Ga0265338_10281686 3300028800 Bacteria 1214
98 Ga0265760_10150995 3300031090 Unclassified 762
99 Ga0265332_10035736 3300031238 Bacteria 2158
100 Ga0265320_10099311 3300031240 Bacteria 1341
101 Ga0265325_10103143 3300031241 Bacteria 1394
102 Ga0265329_10033473 3300031242 Bacteria 1662
103 Ga0265340_10139135 3300031247 Bacteria 1111
104 Ga0265339_10004639 3300031249 Bacteria 9343
105 Ga0265316_10015578 3300031344 Bacteria 6638
106 Ga0265316_10051797 3300031344 Bacteria 3223
107 Ga0265316_10395692 3300031344 Bacteria 995
108 Ga0265313_10087161 3300031595 Bacteria 1408
109 Ga0265313_10089348 3300031595 Bacteria 1386
110 Ga0265314_10064109 3300031711 Bacteria 2490
111 Ga0265314_10383422 3300031711 Bacteria 764
112 Ga0265342_10024721 3300031712 Bacteria 3788
113 Ga0373950_0059164 3300034818 Bacteria 766
114 Ga0373934_0010031 3300035086 Bacteria 3555
115 Ga0373953_0018459 3300035117 Bacteria 2582
116 Ga0373954_0050094 3300035118 Unclassified 1959
117 Ga0373957_0040978 3300035120 Bacteria 1743
118 Ga0373943_0146228 3300035170 Bacteria 1277
119 Ga0373931_0486174 3300035691 Bacteria 794
120 Ga0373935_0069271 3300035692 Bacteria 2272
121 Ga0373935_0519677 3300035692 Bacteria 866
122 Ga0373927_0001484 3300035695 Bacteria 17665
123 Ga0373947_0288239 3300035725 Bacteria 1093
124 Ga0373937_0008187 3300036401 Bacteria 9081
125 Ga0373937_0194850 3300036401 Unclassified 1904
126 Ga0373937_0253654 3300036401 Bacteria 1658
127 Ga0373937_0510756 3300036401 Bacteria 1142
128 Ga0373937_0630971 3300036401 Bacteria 1017
129 Ga0436364_0010660 3300037853 Bacteria 1210
130 Ga0436364_0544526 3300037853 Bacteria 9833
131 Ga0436364_0607034 3300037853 Bacteria 1280
132 Ga0436364_0909054 3300037853 Bacteria 783
133 Ga0436364_1478986 3300037853 Bacteria 893
134 Ga0495617_030633 3300046452 Bacteria 1808
135 Ga0495592_0017614 3300046454 Bacteria 5430
136 Ga0495651_0094592 3300046462 Bacteria 2236
137 Ga0495580_0035503 3300046472 Bacteria 3585
138 Ga0495580_0118881 3300046472 Bacteria 1835
139 Ga0495580_0151614 3300046472 Bacteria 1606
140 Ga0495639_0017278 3300046475 Bacteria 3133
141 Ga0495608_0193626 3300046511 Bacteria 1283
142 Ga0495618_0111848 3300046514 Bacteria 1749
143 Ga0495628_0123253 3300046516 Bacteria 1987
144 Ga0495628_0172471 3300046516 Bacteria 1640
145 Ga0495652_0192741 3300046529 Bacteria 1554
146 Ga0495665_0054542 3300046531 Bacteria 2112
147 Ga0495645_0306341 3300046543 Unclassified 1036
148 Ga0495667_0084022 3300046559 Bacteria 2067
149 Ga0495667_0207121 3300046559 Unclassified 1254
150 Ga0495667_0322372 3300046559 Bacteria 978
151 Ga0495668_0359734 3300046616 Bacteria 799
152 Ga0495623_0341354 3300046679 Unclassified 818
153 Ga0495604_0111728 3300047317 Bacteria 1992
154 Ga0495674_0088533 3300047319 Bacteria 2648
155 Ga0495674_0144958 3300047319 Bacteria 1994
156 Ga0495680_0122214 3300047322 Bacteria 1921
157 Ga0495675_0036411 3300047444 Bacteria 3139
158 Ga0495684_0001149 3300047471 Bacteria 21314
159 Ga0495684_0190543 3300047471 Unclassified 1516
160 Ga0495602_0010319 3300048088 Bacteria 9697
161 Ga0495602_0131062 3300048088 Unclassified 2000
162 Ga0495602_0189256 3300048088 Bacteria 1580
163 Ga0496106_0170696 3300048909 Bacteria 1724
164 Ga0496115_0485598 3300048918 Unclassified 994
165 nmdc:mga05p37_1685_c1 3300050507 Bacteria 25708
166 nmdc:mga05p37_283829_c1 3300050507 Bacteria 1973
167 nmdc:mga09592_469487_c1 3300050508 Unclassified 1085
168 nmdc:mga06r32_95148_c1 3300050510 Unclassified 2915
169 nmdc:mga0a205_294729_c1 3300050515 Bacteria 1496
170 Ga0495619_0431242 3300053085 Bacteria 909
171 Ga0070681_10072756
172 Ga0070683_100127964
173 Ga0068868_100692184
174 Ga0070689_100169400
175 Ga0070671_100234007
176 Ga0070703_10117701
177 Ga0070714_100013665
178 Ga0070711_100169487
179 Ga0070681_10136338
180 Ga0070699_100719949
181 Ga0070679_100661848
182 Ga0070684_100000009
183 Ga0070697_100232926
184 Ga0068855_100019260
185 Ga0068854_100336807
186 Ga0068856_100032663
187 Ga0068859_100498983
188 Ga0068863_100094980
189 Ga0068858_100011080
190 Ga0068860_100203682
191 Ga0068860_100752232
192 Ga0068860_101209014
193 Ga0070717_10272620
194 Ga0070716_100148711
195 Ga0097621_100002922
196 Ga0097621_100078623
197 Ga0097621_100080606
198 Ga0097621_100207025
199 Ga0068871_100008353
200 Ga0068871_100026058
201 Ga0068871_100156826
202 Ga0068871_100560812
203 Ga0075428_100020060
204 Ga0075431_100007756
205 Ga0075431_100120955
206 Ga0075433_10187490
207 Ga0075429_100018025
208 Ga0075429_100171556
209 Ga0097620_100499068
210 Ga0099794_10001750
211 Ga0105240_10001426
212 Ga0105240_10010655
213 Ga0105240_10018294
214 Ga0114129_10003125
215 Ga0114129_10125762
216 Ga0105242_10756309
217 Ga0105242_11038040
218 Ga0105248_10121506
219 Ga0105237_10802031
220 Ga0105246_10613145
221 Ga0157370_10002534
222 Ga0157370_10131864
223 Ga0157369_10004310
224 Ga0157369_11259596
225 Ga0157378_10171023
226 Ga0157372_10169649
227 Ga0157375_10967983
228 Ga0163163_10011176
229 Ga0163163_11289012
230 Ga0157380_10116279
231 Ga0157380_10141691
232 Ga0157376_10060828
233 Ga0157376_10075693
234 Ga0157376_10796722
235 Ga0213875_10064391
236 Ga0207695_10003876
237 Ga0207695_10014112
238 Ga0207695_10034114
239 Ga0207695_10053253
240 Ga0207695_10152490
241 Ga0207671_10033765
242 Ga0207671_10037636
243 Ga0207663_10093107
244 Ga0207652_10559451
245 Ga0207646_11079514
246 Ga0207687_10068568
247 Ga0207664_10005637
248 Ga0207686_10207400
249 Ga0207711_10074687
250 Ga0207711_10081215
251 Ga0207711_10150294
252 Ga0207661_10000057
253 Ga0207667_10003890
254 Ga0207640_10204544
255 Ga0207677_10245492
256 Ga0207703_10015910
257 Ga0207703_10213015
258 Ga0207702_10042948
259 Ga0207641_10078278
260 Ga0209588_1005599
261 Ga0268264_10180228
262 Ga0265318_10071071
263 Ga0265336_10042139
264 Ga0265338_10089313
265 Ga0265338_10106370
266 Ga0265338_10258448
267 Ga0265338_10281686
268 Ga0265760_10150995
269 Ga0265332_10035736
270 Ga0265320_10099311
271 Ga0265325_10103143
272 Ga0265329_10033473
273 Ga0265340_10139135
274 Ga0265339_10004639
275 Ga0265316_10015578
276 Ga0265316_10051797
277 Ga0265316_10395692
278 Ga0265313_10087161
279 Ga0265313_10089348
280 Ga0265314_10064109
281 Ga0265314_10383422
282 Ga0265342_10024721
283 Ga0373950_0059164
284 Ga0373934_0010031
285 Ga0373953_0018459
286 Ga0373954_0050094
287 Ga0373957_0040978
288 Ga0373943_0146228
289 Ga0373931_0486174
290 Ga0373935_0069271
291 Ga0373935_0519677
292 Ga0373927_0001484
293 Ga0373947_0288239
294 Ga0373937_0008187
295 Ga0373937_0194850
296 Ga0373937_0253654
297 Ga0373937_0510756
298 Ga0373937_0630971
299 Ga0436364_0010660
300 Ga0436364_0544526
301 Ga0436364_0607034
302 Ga0436364_0909054
303 Ga0436364_1478986
304 Ga0495617_030633
305 Ga0495592_0017614
306 Ga0495651_0094592
307 Ga0495580_0035503
308 Ga0495580_0118881
309 Ga0495580_0151614
310 Ga0495639_0017278
311 Ga0495608_0193626
312 Ga0495618_0111848
313 Ga0495628_0123253
314 Ga0495628_0172471
315 Ga0495652_0192741
316 Ga0495665_0054542
317 Ga0495645_0306341
318 Ga0495667_0084022
319 Ga0495667_0207121
320 Ga0495667_0322372
321 Ga0495668_0359734
322 Ga0495623_0341354
323 Ga0495604_0111728
324 Ga0495674_0088533
325 Ga0495674_0144958
326 Ga0495680_0122214
327 Ga0495675_0036411
328 Ga0495684_0001149
329 Ga0495684_0190543
330 Ga0495602_0010319
331 Ga0495602_0131062
332 Ga0495602_0189256
333 Ga0496106_0170696
334 Ga0496115_0485598
335 nmdc:mga05p37_1685_c1
336 nmdc:mga05p37_283829_c1
337 nmdc:mga09592_469487_c1
338 nmdc:mga06r32_95148_c1
339 nmdc:mga0a205_294729_c1
340 Ga0495619_0431242

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

51

163

0.98

PF00196

GerE

Bacterial regulatory proteins, luxR family

198

254

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7od9-assembly1.cif.gz_B crystal structure of activated chey fused to the c-terminal domain of chef 0.9754 3 120
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.9729 3 120
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9665 151 215
1zlj-assembly2.cif.gz_C crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain 0.9642 155 209
2a9r-assembly1.cif.gz_A-2 rr02-rec phosphate in the active site 0.963 5 122
ID Description Score Start End Superfamily
af_P06993_830_894_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9804 155 209 1.10.10.10
6ekhY00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9729 3 120 3.40.50.2300
4le0B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9645 4 133 3.40.50.2300
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9625 155 209 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9601 155 209 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2V8U1Y8-F1-model_v4 DNA-binding response regulator 0.9907 1 216 GO:0000160
GO:0003677
GO:0006355
AF-A0A7C6E8G0-F1-model_v4 Response regulator transcription factor 0.9836 1 216 GO:0000160
GO:0003677
GO:0006355
AF-A0A1Y2RI95-F1-model_v4 Response regulatory domain-containing protein 0.9834 2 133 GO:0000160
GO:0003677
AF-A0A2W4I2C6-F1-model_v4 Response regulator 0.9823 1 133 GO:0000160
GO:0004674
GO:0005524
AF-A0A7Y4TSV8-F1-model_v4 Response regulator transcription factor 0.9807 1 134 GO:0000160
GO:0003677

Map