F255770

General Info

Members Datasets Scaffolds Average Seq Length
169 142 338 463

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3002998708|3002999548
Length 533
Sequence RSTAIVSRSPRSLREAWVALAGLSAVFLFEMLDNSILNVALPTIGRDLHASTTALQWVTGAYAVVFGGLMLAFGAIADRFGRRRIMLAGLALLGVASLATAFVTTSEQLIAVRAAMGVAAAMTTPGSMALAFRMFDDDDLRVRATTLISTVGLVGLAVGPTAGGFILSIAPWQVLLLVNAPVAVLAIVGLRTGIAPDDPADLHRDPADIPGAALGTATIVFALVAPTLFVNEGAGSWIPWAITAAAVVAAVLFVVRERTARHPLLDLKLVAHPLVSSGLAFKAASGLATAGLGYLVTLQLQLDWGWTPGLASLGMLPQVIVLVAGGALITPLMRRVGLERAAWLSAATVVLGLAVFGLLGRLGYVWVALALVLVAAGMRVVGVVAGTNVLRGLPENRTTIGAALIDTAGEVTAGTGIAVAGTLLAAMFTGPIAAPDWSAHQTGQFRDAVTIASLALTAMAAALVGWGIARSRHAANPAGDAGGAGDAGDAGDAGGAGGAGDADGANAANTARDADGATASADDAAARGAGQPA

Samples

Sample ID Description Type Environment
1 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
22 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
25 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
26 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
27 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
45 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
46 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
47 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
48 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
49 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
50 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
51 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
52 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
53 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
54 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
55 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
56 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
57 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
58 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
59 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
60 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
61 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
62 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
63 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
64 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
65 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
66 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
67 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
68 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
69 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
70 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
71 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
72 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
73 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
74 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
75 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
76 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
77 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
78 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
79 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
80 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
81 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
82 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
86 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
87 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
88 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
89 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
90 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
91 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
92 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
101 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
102 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
103 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
104 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
105 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
106 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
107 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
109 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
110 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
111 2643221616 Leifsonia sp. Root227 Isolate Unclassified
112 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
113 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
114 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
115 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
116 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
117 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
118 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
119 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
120 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
121 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
122 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
123 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
124 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
125 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
126 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
127 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
128 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
129 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
130 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
131 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
132 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
133 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
134 2928153084 Leifsonia sp. 563 Isolate Unclassified
135 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
136 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
137 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
138 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
139 8002784119 Frankia sp. AgB1.9 Isolate Nodule
140 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
141 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
142 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.11
Metatranscriptomes 1.18
Isolates 20.71

Biome Distribution

Category Percentage (%)
Aerial Root 0.59
Bulb 0
Endosphere 8.88
Nodule 0.59
Rhizoplane 6.51
Rhizosphere 63.91
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1083511 3300003578 Bacteria 7530
2 Ga0006562J51391_1083512 3300003578 Bacteria 8983
3 Ga0070658_10020517 3300005327 Bacteria 5297
4 Ga0068869_100022320 3300005334 Bacteria 4360
5 Ga0070682_100019367 3300005337 Bacteria 3992
6 Ga0068868_100057289 3300005338 Bacteria 3078
7 Ga0070668_100000325 3300005347 Bacteria 31383
8 Ga0070668_100005823 3300005347 Bacteria 9143
9 Ga0070710_10000326 3300005437 Bacteria 22705
10 Ga0070700_100012453 3300005441 Bacteria 4749
11 Ga0070663_100016701 3300005455 Bacteria 4775
12 Ga0070678_100037374 3300005456 Bacteria 3409
13 Ga0070662_100133530 3300005457 Bacteria 1917
14 Ga0070685_10017483 3300005466 Bacteria 3839
15 Ga0070665_100165607 3300005548 Bacteria 2213
16 Ga0070665_100193714 3300005548 Bacteria 2033
17 Ga0070664_100022835 3300005564 Bacteria 5160
18 Ga0068856_100078004 3300005614 Bacteria 3283
19 Ga0068852_100027651 3300005616 Bacteria 4625
20 Ga0068859_100121064 3300005617 Bacteria 2683
21 Ga0068861_100024634 3300005719 Bacteria 4355
22 Ga0075364_10011123 3300006051 Bacteria 5463
23 Ga0097620_100121058 3300006931 Bacteria 2683
24 Ga0105245_10013876 3300009098 Bacteria 7019
25 Ga0105247_10075945 3300009101 Bacteria 2109
26 Ga0105237_10143055 3300009545 Bacteria 2386
27 Ga0105249_10010064 3300009553 Bacteria 8298
28 Ga0157376_10052032 3300014969 Bacteria 3404
29 Ga0163161_10013602 3300017792 Bacteria 5665
30 Ga0209563_100211 3300025230 Bacteria 30663
31 Ga0207688_10002111 3300025901 Bacteria 10694
32 Ga0207649_10096678 3300025920 Bacteria 1946
33 Ga0207687_10024480 3300025927 Bacteria 4034
34 Ga0207690_10074073 3300025932 Bacteria 2357
35 Ga0207706_10004607 3300025933 Bacteria 12940
36 Ga0207669_10011593 3300025937 Bacteria 4297
37 Ga0207679_10072599 3300025945 Bacteria 2600
38 Ga0207668_10000985 3300025972 Bacteria 17116
39 Ga0207678_10016901 3300026067 Bacteria 6407
40 Ga0207708_10025453 3300026075 Bacteria 4476
41 Ga0207676_10145921 3300026095 Bacteria 2032
42 Ga0207683_10021265 3300026121 Bacteria 5552
43 Ga0207698_10054658 3300026142 Bacteria 3073
44 Ga0268266_10053272 3300028379 Bacteria 3475
45 Ga0268265_10028184 3300028380 Bacteria 4019
46 Ga0268264_10071602 3300028381 Bacteria 2938
47 Ga0307515_10046910 3300028794 Bacteria 6588
48 Ga0307512_10004003 3300030522 Bacteria 16458
49 Ga0265330_10011883 3300031235 Bacteria 4074
50 Ga0265329_10016556 3300031242 Bacteria 2552
51 Ga0265316_10000161 3300031344 Bacteria 75474
52 Ga0307513_10000693 3300031456 Bacteria 48399
53 Ga0307513_10006484 3300031456 Bacteria 15279
54 Ga0307508_10016644 3300031616 Bacteria 6690
55 Ga0307508_10072155 3300031616 Bacteria 3027
56 Ga0265342_10000878 3300031712 Bacteria 30013
57 Ga0307516_10001584 3300031730 Bacteria 31288
58 Ga0307518_10001460 3300031838 Bacteria 17546
59 Ga0373951_0000023 3300035091 Bacteria 61297
60 Ga0373954_0075432 3300035118 Bacteria 1606
61 Ga0395899_0016324 3300037312 Bacteria 5660
62 Ga0395900_0016126 3300037418 Bacteria 7611
63 Ga0395898_0000098 3300037466 Bacteria 229806
64 Ga0439466_0004232 3300041411 Bacteria 5539
65 Ga0439434_0002608 3300042435 Bacteria 5247
66 Ga0466969_0014173 3300044656 Bacteria 4192
67 Ga0466972_0010436 3300044658 Bacteria 4664
68 Ga0466966_0018149 3300044684 Bacteria 4643
69 Ga0466961_0078136 3300044693 Bacteria 2096
70 Ga0466968_0033061 3300044735 Bacteria 2154
71 Ga0466970_0050156 3300044765 Bacteria 2226
72 Ga0466957_0011893 3300044842 Bacteria 5030
73 Ga0466959_0022474 3300045049 Bacteria 4663
74 Ga0466967_0149139 3300045976 Bacteria 2184
75 Ga0495603_0002782 3300046455 Bacteria 10312
76 Ga0495603_0007380 3300046455 Bacteria 6611
77 Ga0495629_0006679 3300046459 Bacteria 8539
78 Ga0495651_0025177 3300046462 Bacteria 4631
79 Ga0495653_0038081 3300046463 Bacteria 3775
80 Ga0495650_0001535 3300046471 Bacteria 21891
81 Ga0495650_0009232 3300046471 Bacteria 5638
82 Ga0495594_0000294 3300046499 Bacteria 24440
83 Ga0495594_0016999 3300046499 Bacteria 3839
84 Ga0495594_0029752 3300046499 Bacteria 2953
85 Ga0495632_0021396 3300046519 Bacteria 3486
86 Ga0495613_0035193 3300046689 Bacteria 3717
87 Ga0495581_0077319 3300047315 Bacteria 1926
88 Ga0495604_0008937 3300047317 Bacteria 7919
89 Ga0495676_0015647 3300047321 Bacteria 6745
90 Ga0496105_0086388 3300048908 Bacteria 2592
91 Ga0496108_0000909 3300048911 Bacteria 23070
92 Ga0496108_0016897 3300048911 Bacteria 5964
93 Ga0496108_0039817 3300048911 Bacteria 3917
94 Ga0496109_0001272 3300048912 Bacteria 20917
95 Ga0496109_0123446 3300048912 Bacteria 2413
96 Ga0496109_0135697 3300048912 Bacteria 2299
97 Ga0496110_0034378 3300048913 Bacteria 4391
98 Ga0496111_0005047 3300048914 Bacteria 8397
99 Ga0496114_0036343 3300048917 Bacteria 4072
100 Ga0496114_0231013 3300048917 Bacteria 1625
101 Ga0496117_0003253 3300048920 Bacteria 19106
102 Ga0496117_0017735 3300048920 Bacteria 5935
103 Ga0496118_0000472 3300048921 Bacteria 66796
104 Ga0496118_0005935 3300048921 Bacteria 13646
105 Ga0496119_0063778 3300048922 Bacteria 2190
106 Ga0496119_0066474 3300048922 Bacteria 2130
107 Ga0496122_0006894 3300048925 Bacteria 12848
108 Ga0496123_0048052 3300048926 Bacteria 2875
109 Ga0496124_0000040 3300048927 Bacteria 307061
110 Ga0496124_0073362 3300048927 Bacteria 2832
111 Ga0496126_0001101 3300048929 Bacteria 45352
112 Ga0501033_0014495 3300049570 Bacteria 5984
113 Ga0501034_0085224 3300049571 Bacteria 3161
114 Ga0501034_0099396 3300049571 Bacteria 2904
115 Ga0501047_0005023 3300049581 Bacteria 12422
116 Ga0501047_0007683 3300049581 Bacteria 10157
117 Ga0501070_0000044 3300049586 Bacteria 108859
118 Ga0501035_0004104 3300049822 Bacteria 13845
119 Ga0501035_0012651 3300049822 Bacteria 7798
120 Ga0501044_0001106 3300049823 Bacteria 32051
121 Ga0501044_0158416 3300049823 Bacteria 2242
122 nmdc:mga00v17_3303_c1 3300050491 Bacteria 8318
123 Ga0500635_0000056 3300053080 Bacteria 73518
124 Ga0500583_0017996 3300053092 Bacteria 2862
125 Ga0500594_0008699 3300053118 Bacteria 2320
126 Ga0500652_028297 3300053131 Bacteria 2176
127 Ga0500559_0018862 3300053136 Bacteria 2914
128 Ga0500559_0021017 3300053136 Bacteria 2763
129 Ga0500573_0004011 3300053140 Bacteria 7694
130 Ga0500573_0005075 3300053140 Bacteria 7011
131 Ga0500573_0008195 3300053140 Bacteria 5746
132 Ga0500590_000283 3300053148 Bacteria 16088
133 Ga0500616_0005023 3300053153 Bacteria 9164
134 Ga0500616_0025532 3300053153 Bacteria 3276
135 3002999548 3002998708 Bacteria 11715108
136 2586061019 2585427649 Bacteria 9053857
137 2644096821 2643221616 Bacteria 4066575
138 2644183765 2643221632 Bacteria 3406696
139 2644639065 2643221715 Bacteria 6671032
140 2753267406 2751185782 Bacteria 11227053
141 2753302780 2751185788 Bacteria 4541048
142 2809589949 2808606522 Bacteria 9488490
143 2844856166 2844852863 Bacteria 3849151
144 2852680555 2852677369 Bacteria 3768884
145 2857731401 2857729791 Bacteria 4040535
146 2904433336 2904430863 Bacteria 3486923
147 2904502087 2904501621 Bacteria 3401437
148 2904769205 2904765812 Bacteria 5369154
149 2904772616 2904770941 Bacteria 5580202
150 2904773998 2904770941 Bacteria 5580202
151 2908677807 2908674828 Bacteria 3382763
152 2909076337 2909074476 Bacteria 3436050
153 2915768907 2915768154 Bacteria 8424322
154 2919040388 2919039151 Bacteria 3391018
155 2919042790 2919042368 Bacteria 3905917
156 2919055533 2919055335 Bacteria 3875751
157 2919420320 2919420072 Bacteria 5390363
158 2919433922 2919432681 Bacteria 5390474
159 2928106247 2928104781 Bacteria 3877447
160 2928122051 2928121344 Bacteria 3972376
161 2928153678 2928153084 Bacteria 4020257
162 2928502531 2928500415 Bacteria 3384541
163 2935411582 2935409751 Bacteria 4179611
164 2966925394 2966924647 Bacteria 3268643
165 2984554927 2984551494 Bacteria 3877562
166 8002785431 8002784119 Bacteria 9788632
167 8002813051 8002811521 Bacteria 2942897
168 8055072599 8055066027 Bacteria 9479577
169 8056040112 8056037122 Bacteria 3854319
170 Ga0006562J51391_1083511
171 Ga0006562J51391_1083512
172 Ga0070658_10020517
173 Ga0068869_100022320
174 Ga0070682_100019367
175 Ga0068868_100057289
176 Ga0070668_100000325
177 Ga0070668_100005823
178 Ga0070710_10000326
179 Ga0070700_100012453
180 Ga0070663_100016701
181 Ga0070678_100037374
182 Ga0070662_100133530
183 Ga0070685_10017483
184 Ga0070665_100165607
185 Ga0070665_100193714
186 Ga0070664_100022835
187 Ga0068856_100078004
188 Ga0068852_100027651
189 Ga0068859_100121064
190 Ga0068861_100024634
191 Ga0075364_10011123
192 Ga0097620_100121058
193 Ga0105245_10013876
194 Ga0105247_10075945
195 Ga0105237_10143055
196 Ga0105249_10010064
197 Ga0157376_10052032
198 Ga0163161_10013602
199 Ga0209563_100211
200 Ga0207688_10002111
201 Ga0207649_10096678
202 Ga0207687_10024480
203 Ga0207690_10074073
204 Ga0207706_10004607
205 Ga0207669_10011593
206 Ga0207679_10072599
207 Ga0207668_10000985
208 Ga0207678_10016901
209 Ga0207708_10025453
210 Ga0207676_10145921
211 Ga0207683_10021265
212 Ga0207698_10054658
213 Ga0268266_10053272
214 Ga0268265_10028184
215 Ga0268264_10071602
216 Ga0307515_10046910
217 Ga0307512_10004003
218 Ga0265330_10011883
219 Ga0265329_10016556
220 Ga0265316_10000161
221 Ga0307513_10000693
222 Ga0307513_10006484
223 Ga0307508_10016644
224 Ga0307508_10072155
225 Ga0265342_10000878
226 Ga0307516_10001584
227 Ga0307518_10001460
228 Ga0373951_0000023
229 Ga0373954_0075432
230 Ga0395899_0016324
231 Ga0395900_0016126
232 Ga0395898_0000098
233 Ga0439466_0004232
234 Ga0439434_0002608
235 Ga0466969_0014173
236 Ga0466972_0010436
237 Ga0466966_0018149
238 Ga0466961_0078136
239 Ga0466968_0033061
240 Ga0466970_0050156
241 Ga0466957_0011893
242 Ga0466959_0022474
243 Ga0466967_0149139
244 Ga0495603_0002782
245 Ga0495603_0007380
246 Ga0495629_0006679
247 Ga0495651_0025177
248 Ga0495653_0038081
249 Ga0495650_0001535
250 Ga0495650_0009232
251 Ga0495594_0000294
252 Ga0495594_0016999
253 Ga0495594_0029752
254 Ga0495632_0021396
255 Ga0495613_0035193
256 Ga0495581_0077319
257 Ga0495604_0008937
258 Ga0495676_0015647
259 Ga0496105_0086388
260 Ga0496108_0000909
261 Ga0496108_0016897
262 Ga0496108_0039817
263 Ga0496109_0001272
264 Ga0496109_0123446
265 Ga0496109_0135697
266 Ga0496110_0034378
267 Ga0496111_0005047
268 Ga0496114_0036343
269 Ga0496114_0231013
270 Ga0496117_0003253
271 Ga0496117_0017735
272 Ga0496118_0000472
273 Ga0496118_0005935
274 Ga0496119_0063778
275 Ga0496119_0066474
276 Ga0496122_0006894
277 Ga0496123_0048052
278 Ga0496124_0000040
279 Ga0496124_0073362
280 Ga0496126_0001101
281 Ga0501033_0014495
282 Ga0501034_0085224
283 Ga0501034_0099396
284 Ga0501047_0005023
285 Ga0501047_0007683
286 Ga0501070_0000044
287 Ga0501035_0004104
288 Ga0501035_0012651
289 Ga0501044_0001106
290 Ga0501044_0158416
291 nmdc:mga00v17_3303_c1
292 Ga0500635_0000056
293 Ga0500583_0017996
294 Ga0500594_0008699
295 Ga0500652_028297
296 Ga0500559_0018862
297 Ga0500559_0021017
298 Ga0500573_0004011
299 Ga0500573_0005075
300 Ga0500573_0008195
301 Ga0500590_000283
302 Ga0500616_0005023
303 Ga0500616_0025532
304 3002999548
305 2586061019
306 2644096821
307 2644183765
308 2644639065
309 2753267406
310 2753302780
311 2809589949
312 2844856166
313 2852680555
314 2857731401
315 2904433336
316 2904502087
317 2904769205
318 2904772616
319 2904773998
320 2908677807
321 2909076337
322 2915768907
323 2919040388
324 2919042790
325 2919055533
326 2919420320
327 2919433922
328 2928106247
329 2928122051
330 2928153678
331 2928502531
332 2935411582
333 2966925394
334 2984554927
335 8002785431
336 8002813051
337 8055072599
338 8056040112

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00083

Sugar_tr

Sugar (and other) transporter

21

197

0.85

PF07690

MFS_1

Major Facilitator Superfamily

23

417

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.834 28 460
8pnl-assembly1.cif.gz_A outward-open conformation of a major facilitator superfamily (mfs) transporter mhas2168, a homologue of rv1410 from m. tuberculosis, in complex with an alpaca nanobody 0.7979 27 460
7d5p-assembly1.cif.gz_A structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.7852 30 459
7d5p-assembly2.cif.gz_B structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.7842 31 459
7d5p-assembly1.cif.gz_A structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.778 30 459
ID Description Score Start End Superfamily
af_Q03263_69_259_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9117 29 202 1.20.1250.20
af_P31474_14_249_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9116 34 263 1.20.1250.20
af_Q86M88_601_814_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9108 30 234 1.20.1250.20
af_Q2G2W1_141_346_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9075 32 229 1.20.1250.20
af_P9WJX7_21_217_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9039 31 202 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A3D9Q0N2-F1-model_v4 deleted 0.9686 16 468
AF-A0A1I6F7K6-F1-model_v4 Major Facilitator Superfamily protein 0.9449 5 460 GO:0016020
GO:0022857
AF-A0A3D9Q0N2-F1-model_v4 deleted 0.928 16 468
AF-A0A6N3WLC7-F1-model_v4 deleted 0.919 26 284
AF-A0A2W5SSY8-F1-model_v4 MFS transporter 0.912 35 415 GO:0005886
GO:0022857

Map