F255768

General Info

Members Datasets Scaffolds Average Seq Length
169 124 106 503

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2984551494|2984554234
Length 561
Sequence ESDVRPQGAAPTASVAPGQDAAAGRASAAAGRGSAAAGRGAAVRPPAGRRSDFAALPLAQAFPLAVIGGVLFALAFPSPGWWFLAYPALACMLLAAMGQRARRAAWLGYVSGAAFWIPAISWAGRYLGPVPWFALALFEAAFFALGSVAIALAYRWVARVVPSTAGRVWGLPAVVAALWTGREWFSGSWPYGGFAWGRVGLSQSQGPFTHLAAYVGVLGVTFVVVYCVAVVVSLALVVPRGPGRAVRVPVRVATAGLLVAAVLAVPAWPTATDGTIRIESVQGDGPAGYFDRAAPGAVLSAQVAATDVEAKGVDLVVWPEGSAEFDPRQQPVIASALDQVVDSVGAPIVAGAITQTSSGVLHNTSFVWTKDGWQSSYDKKRPVPFGEYVPDRWFFSKLAPSLIGLLQRDYTPGTKPNVLSVAGVRAGIAICFDIVDDGLATDMARGGAQVILAQTNNADFDGTDENLQQLEIARMRAIETGRSLVNISTVGASQVIDPTGRTIDRVPAYTATSMITDVPLGTTTTPATLASGSIALLLSLGGLLTLLACAPWGRRGTARRA

Samples

Sample ID Description Type Environment
1 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
2 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
3 2643221549 Agromyces sp. Root1464 Isolate Unclassified
4 2643221553 Microbacterium sp. Root553 Isolate Unclassified
5 2643221566 Microbacterium sp. Root166 Isolate Unclassified
6 2643221597 Microbacterium sp. Root180 Isolate Unclassified
7 2643221616 Leifsonia sp. Root227 Isolate Unclassified
8 2643221630 Microbacterium sp. Root322 Isolate Unclassified
9 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
10 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
11 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
12 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
13 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
14 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
15 2773857759 Microbacterium sp. 1294 Isolate Unclassified
16 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
17 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
18 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
19 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
20 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
21 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
22 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
23 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
24 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
25 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
26 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
27 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
28 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
29 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
30 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
31 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
32 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
33 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
34 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
35 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
36 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
37 2919069694 Microbacterium sp. 1154 Isolate Unclassified
38 2919395869 Microbacterium resistens 2980 Isolate Unclassified
39 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
40 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
41 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
42 2928153084 Leifsonia sp. 563 Isolate Unclassified
43 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
44 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
45 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
46 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
47 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
48 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
49 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
50 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
51 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
52 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
53 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
54 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
55 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
56 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
57 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
58 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
59 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
60 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
61 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
62 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
63 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
64 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
65 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
66 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
67 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
68 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
69 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
70 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
71 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
72 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
73 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
74 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
81 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
88 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
89 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
90 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
91 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
92 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
93 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
94 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
95 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
98 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
102 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
103 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
104 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
107 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
108 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
109 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
110 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
111 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
112 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
113 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
120 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
121 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
122 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
123 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
124 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 59.76
Metatranscriptomes 2.96
Isolates 37.28

Biome Distribution

Category Percentage (%)
Aerial Root 1.78
Bulb 0
Endosphere 13.61
Nodule 0
Rhizoplane 7.1
Rhizosphere 32.54
Stem 0
Stem Tuber 0.59
Unclassified 44.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10006002 3300002067 Bacteria 4014
2 JGI25154J39366_1000212 3300002738 Bacteria 40514
3 JGI25154J39366_1000821 3300002738 Bacteria 13512
4 rootH1_10048390 3300003323 Bacteria 2369
5 Ga0006562J51391_1068032 3300003578 Bacteria 17790
6 Ga0006562J51391_1072583 3300003578 Bacteria 9140
7 Ga0006562J51391_1185819 3300003578 Bacteria 5721
8 Ga0006562J51391_1185820 3300003578 Bacteria 5570
9 Ga0055539_1000008 3300003752 Bacteria 537665
10 Ga0055533_1000001 3300003756 Bacteria 1863437
11 Ga0055525_1000197 3300003759 Bacteria 71227
12 Ga0055527_1000001 3300003760 Bacteria 850044
13 Ga0055529_1000065 3300003763 Bacteria 173112
14 Ga0055541_1000767 3300003841 Bacteria 8119
15 Ga0070679_100173782 3300005530 Bacteria 2127
16 Ga0075365_10001078 3300006038 Bacteria 11837
17 Ga0075364_10024231 3300006051 Bacteria 3850
18 Ga0075364_10053482 3300006051 Bacteria 2639
19 Ga0157369_10200188 3300013105 Bacteria 2097
20 Ga0157369_10200450 3300013105 Bacteria 2095
21 Ga0171462_1003 3300013250 Bacteria 853796
22 Ga0163162_10030188 3300013306 Bacteria 5371
23 Ga0206353_11320462 3300020082 Bacteria 2772
24 Ga0209566_100050 3300025225 Bacteria 234653
25 Ga0209674_100001 3300025226 Bacteria 4013750
26 Ga0209672_100006 3300025228 Bacteria 1004497
27 Ga0209147_100389 3300025229 Bacteria 30184
28 Ga0209563_100001 3300025230 Bacteria 4013775
29 Ga0209563_101506 3300025230 Bacteria 6116
30 Ga0209258_102438 3300025242 Bacteria 4808
31 Ga0209646_1000041 3300025246 Bacteria 346024
32 Ga0209646_1000099 3300025246 Bacteria 180436
33 Ga0209646_1000539 3300025246 Bacteria 16391
34 Ga0209677_100001 3300025253 Bacteria 4013787
35 Ga0209677_103860 3300025253 Bacteria 4604
36 Ga0209148_1000015 3300025254 Bacteria 850103
37 Ga0209455_1000013 3300025272 Bacteria 850103
38 Ga0207655_1008105 3300025728 Bacteria 6720
39 Ga0207705_10045908 3300025909 Bacteria 3139
40 Ga0307406_10000383 3300031901 Bacteria 25525
41 Ga0307406_10001583 3300031901 Bacteria 12536
42 Ga0307406_10108640 3300031901 Bacteria 1905
43 Ga0307412_10129283 3300031911 Bacteria 1832
44 Ga0395899_0001421 3300037312 Bacteria 20518
45 Ga0395900_0000951 3300037418 Bacteria 37787
46 Ga0395898_0000677 3300037466 Bacteria 61608
47 Ga0395901_0094588 3300038443 Bacteria 3131
48 Ga0466971_0018417 3300044719 Bacteria 3093
49 Ga0466970_0000099 3300044765 Bacteria 37481
50 Ga0466970_0065577 3300044765 Bacteria 1948
51 Ga0495627_004456 3300046453 Bacteria 5854
52 Ga0496101_0074635 3300048904 Bacteria 2494
53 Ga0496102_0048341 3300048905 Bacteria 3868
54 Ga0496103_0059706 3300048906 Bacteria 2369
55 Ga0496107_0042277 3300048910 Bacteria 3273
56 Ga0496109_0065681 3300048912 Bacteria 3321
57 Ga0496110_0037720 3300048913 Bacteria 4201
58 Ga0496111_0127425 3300048914 Bacteria 1882
59 Ga0496112_0029361 3300048915 Bacteria 5318
60 Ga0496113_0122078 3300048916 Bacteria 2037
61 Ga0496114_0017013 3300048917 Bacteria 5864
62 Ga0496114_0017753 3300048917 Bacteria 5749
63 Ga0496115_0011630 3300048918 Bacteria 6603
64 Ga0496117_0000468 3300048920 Bacteria 67418
65 Ga0496117_0001870 3300048920 Bacteria 28374
66 Ga0496117_0002731 3300048920 Bacteria 21665
67 Ga0496117_0007695 3300048920 Bacteria 10431
68 Ga0496117_0009322 3300048920 Bacteria 9155
69 Ga0496118_0002411 3300048921 Bacteria 25221
70 Ga0496118_0003954 3300048921 Bacteria 18127
71 Ga0496119_0001693 3300048922 Bacteria 25768
72 Ga0496119_0001803 3300048922 Bacteria 24893
73 Ga0496119_0004270 3300048922 Bacteria 14318
74 Ga0496119_0038809 3300048922 Bacteria 3071
75 Ga0496119_0046534 3300048922 Bacteria 2708
76 Ga0496120_0002092 3300048923 Bacteria 21395
77 Ga0496122_0000194 3300048925 Bacteria 139191
78 Ga0496122_0003117 3300048925 Bacteria 22223
79 Ga0496122_0020327 3300048925 Bacteria 6006
80 Ga0496123_0000225 3300048926 Bacteria 115105
81 Ga0496123_0004366 3300048926 Bacteria 14933
82 Ga0496124_0000363 3300048927 Bacteria 82857
83 Ga0496124_0006091 3300048927 Bacteria 13267
84 Ga0496124_0006208 3300048927 Bacteria 13093
85 Ga0496124_0011284 3300048927 Bacteria 8944
86 Ga0496124_0066672 3300048927 Bacteria 2997
87 Ga0496124_0123681 3300048927 Bacteria 2064
88 Ga0496125_0000061 3300048928 Bacteria 262739
89 Ga0496125_0006369 3300048928 Bacteria 12796
90 Ga0496125_0016858 3300048928 Bacteria 6997
91 Ga0496125_0021091 3300048928 Bacteria 6088
92 Ga0496125_0033832 3300048928 Bacteria 4515
93 Ga0496126_0015291 3300048929 Bacteria 7725
94 Ga0496126_0031097 3300048929 Bacteria 5048
95 Ga0496126_0175623 3300048929 Bacteria 1822
96 Ga0501033_0087515 3300049570 Bacteria 2280
97 Ga0501034_0022566 3300049571 Bacteria 6412
98 Ga0501034_0038606 3300049571 Bacteria 4835
99 Ga0501038_0003800 3300049574 Bacteria 14051
100 Ga0501038_0051799 3300049574 Bacteria 3540
101 Ga0501043_0047873 3300049579 Bacteria 3362
102 Ga0501070_0000191 3300049586 Bacteria 57453
103 Ga0501070_0000245 3300049586 Bacteria 51075
104 nmdc:mga00v17_46741_c2 3300050491 Bacteria 1943
105 nmdc:mga0sz30_6173_c1 3300050516 Bacteria 4437
106 Ga0500635_0000044 3300053080 Bacteria 87331

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048914 Ga0496111_0127425 Ga0496111_0127425_21_1337 378
2 3300048916 Ga0496113_0122078 Ga0496113_0122078_10_1386 378
3 iso_pu_bacteria 2977264416 2977266453 394
4 3300003323 rootH1_10048390 rootH1_100483902 399
5 3300013105 Ga0157369_10200188 Ga0157369_102001883 403
6 3300013306 Ga0163162_10030188 Ga0163162_100301883 404
7 3300031901 Ga0307406_10000383 Ga0307406_1000038316 410
8 3300048927 Ga0496124_0011284 Ga0496124_0011284_1897_3447 414
9 3300048920 Ga0496117_0000468 Ga0496117_0000468_166_1728 421
10 3300048920 Ga0496117_0001870 Ga0496117_0001870_13634_15238 421
11 3300048921 Ga0496118_0002411 Ga0496118_0002411_13978_15582 421
12 3300048922 Ga0496119_0004270 Ga0496119_0004270_7074_8636 421
13 3300048922 Ga0496119_0046534 Ga0496119_0046534_769_2373 421
14 3300048923 Ga0496120_0002092 Ga0496120_0002092_19001_20563 421
15 3300048925 Ga0496122_0003117 Ga0496122_0003117_7165_8727 421
16 3300048925 Ga0496122_0020327 Ga0496122_0020327_3793_5397 421
17 3300048926 Ga0496123_0004366 Ga0496123_0004366_7745_9307 421
18 3300048927 Ga0496124_0006208 Ga0496124_0006208_3497_5059 421
19 3300048928 Ga0496125_0006369 Ga0496125_0006369_5618_7180 421
20 3300048929 Ga0496126_0031097 Ga0496126_0031097_154_1716 421
21 3300049571 Ga0501034_0038606 Ga0501034_0038606_729_2252 424
22 3300049574 Ga0501038_0051799 Ga0501038_0051799_735_2258 427
23 3300048927 Ga0496124_0000363 Ga0496124_0000363_6651_8255 428
24 3300038443 Ga0395901_0094588 Ga0395901_0094588_11_1462 433
25 3300046453 Ga0495627_004456 Ga0495627_004456_838_2280 434
26 3300048927 Ga0496124_0123681 Ga0496124_0123681_214_1806 437
27 3300048904 Ga0496101_0074635 Ga0496101_0074635_542_2101 438
28 3300048905 Ga0496102_0048341 Ga0496102_0048341_1351_2910 438
29 3300048906 Ga0496103_0059706 Ga0496103_0059706_675_2234 438
30 3300048910 Ga0496107_0042277 Ga0496107_0042277_1678_3237 438
31 3300048912 Ga0496109_0065681 Ga0496109_0065681_716_2275 438
32 3300048913 Ga0496110_0037720 Ga0496110_0037720_1912_3471 438
33 3300048915 Ga0496112_0029361 Ga0496112_0029361_1571_3130 438
34 3300048917 Ga0496114_0017753 Ga0496114_0017753_1373_2932 438
35 3300048918 Ga0496115_0011630 Ga0496115_0011630_3674_5233 438
36 3300048922 Ga0496119_0038809 Ga0496119_0038809_864_2423 438
37 3300002738 JGI25154J39366_1000821 JGI25154J39366_10008212 439
38 3300005530 Ga0070679_100173782 Ga0070679_1001737822 439
39 3300025246 Ga0209646_1000099 Ga0209646_1000099104 439
40 3300044765 Ga0466970_0000099 Ga0466970_0000099_33218_34696 439
41 3300025246 Ga0209646_1000539 Ga0209646_10005393 441
42 3300031901 Ga0307406_10108640 Ga0307406_101086401 441
43 3300048927 Ga0496124_0066672 Ga0496124_0066672_636_2195 441
44 3300048929 Ga0496126_0175623 Ga0496126_0175623_318_1790 444
45 3300031911 Ga0307412_10129283 Ga0307412_101292832 447
46 3300048922 Ga0496119_0001803 Ga0496119_0001803_329_1915 447
47 3300050491 nmdc:mga00v17_46741_c2 nmdc:mga00v17_46741_c2_313_1812 447
48 3300050516 nmdc:mga0sz30_6173_c1 nmdc:mga0sz30_6173_c1_1029_2528 447
49 3300048928 Ga0496125_0000061 Ga0496125_0000061_21269_22813 449
50 3300053080 Ga0500635_0000044 Ga0500635_0000044_31573_33090 451
51 iso_pu_bacteria 2919042368 2919043779 453
52 iso_pu_bacteria 2721755702 2723642117 454
53 3300006051 Ga0075364_10053482 Ga0075364_100534822 456
54 3300048920 Ga0496117_0002731 Ga0496117_0002731_3083_4606 456
55 3300048928 Ga0496125_0016858 Ga0496125_0016858_1861_3384 456
56 3300048929 Ga0496126_0015291 Ga0496126_0015291_3538_5061 456
57 iso_pu_bacteria 2643221542 2643733749 456
58 iso_pu_bacteria 2643221553 2643785665 456
59 iso_pu_bacteria 2643221616 2644096047 456
60 iso_pu_bacteria 2643221630 2644170330 456
61 iso_pu_bacteria 2643221724 2644680066 456
62 iso_pu_bacteria 2728369380 2730229564 456
63 iso_pu_bacteria 2852663356 2852665184 456
64 iso_pu_bacteria 2946041624 2946044119 456
65 iso_pu_bacteria 8004182704 8004185234 456
66 3300044765 Ga0466970_0065577 Ga0466970_0065577_234_1781 457
67 iso_pu_bacteria 2884763398 2884765411 457
68 iso_pu_bacteria 2935409751 2935411468 457
69 3300002738 JGI25154J39366_1000212 JGI25154J39366_100021210 458
70 3300025246 Ga0209646_1000041 Ga0209646_1000041202 458
71 3300025728 Ga0207655_1008105 Ga0207655_10081055 458
72 3300048920 Ga0496117_0009322 Ga0496117_0009322_3854_5392 458
73 3300048921 Ga0496118_0003954 Ga0496118_0003954_11970_13508 458
74 3300048922 Ga0496119_0001693 Ga0496119_0001693_17617_19155 458
75 3300048925 Ga0496122_0000194 Ga0496122_0000194_133789_135327 458
76 3300048926 Ga0496123_0000225 Ga0496123_0000225_47210_48748 458
77 3300048927 Ga0496124_0006091 Ga0496124_0006091_3805_5343 458
78 3300048928 Ga0496125_0021091 Ga0496125_0021091_2288_3820 458
79 3300048928 Ga0496125_0033832 Ga0496125_0033832_2703_4241 458
80 iso_pu_bacteria 2643221553 2643785695 458
81 iso_pu_bacteria 2643221630 2644172755 458
82 iso_pu_bacteria 2643221724 2644680106 458
83 iso_pu_bacteria 2747842429 2747952255 458
84 iso_pu_bacteria 2751185788 2753302099 458
85 iso_pu_bacteria 2852646457 2852647202 458
86 iso_pu_bacteria 2904430863 2904432596 458
87 iso_pu_bacteria 2928104781 2928106796 458
88 iso_pu_bacteria 2945968032 2945971663 458
89 iso_pu_bacteria 2946080515 2946081033 458
90 iso_pu_bacteria 2984551494 2984554234 458
91 3300031901 Ga0307406_10001583 Ga0307406_100015838 460
92 iso_pu_bacteria 2773857763 2774399703 460
93 iso_pu_bacteria 2857729791 2857732541 460
94 iso_pu_bacteria 2904501621 2904503057 460
95 iso_pu_bacteria 2908674828 2908675766 460
96 iso_pu_bacteria 2909074476 2909074818 460
97 iso_pu_bacteria 2919039151 2919041289 460
98 iso_pu_bacteria 2928500415 2928502395 460
99 3300037312 Ga0395899_0001421 Ga0395899_0001421_7100_8638 461
100 3300049571 Ga0501034_0022566 Ga0501034_0022566_1400_2941 461
101 3300049574 Ga0501038_0003800 Ga0501038_0003800_6024_7565 461
102 iso_pu_bacteria 2773857759 2774384359 461
103 iso_pu_bacteria 2977251589 2977254054 461
104 3300013105 Ga0157369_10200450 Ga0157369_102004502 462
105 3300048920 Ga0496117_0007695 Ga0496117_0007695_6255_7781 462
106 iso_pu_bacteria 2852663356 2852666632 462
107 3300003578 Ga0006562J51391_1072583 Ga0006562J51391_10725836 463
108 iso_pu_bacteria 2919395869 2919398701 463
109 3300003752 Ga0055539_1000008 Ga0055539_1000008274 464
110 3300003756 Ga0055533_1000001 Ga0055533_1000001797 464
111 3300003759 Ga0055525_1000197 Ga0055525_100019739 464
112 3300003841 Ga0055541_1000767 Ga0055541_10007677 464
113 3300013250 Ga0171462_1003 Ga0171462_1003561 464
114 3300025225 Ga0209566_100050 Ga0209566_100050191 464
115 3300025226 Ga0209674_100001 Ga0209674_100001797 464
116 3300025230 Ga0209563_100001 Ga0209563_100001797 464
117 3300025253 Ga0209677_100001 Ga0209677_100001797 464
118 iso_pu_bacteria 2585428157 2588108351 465
119 iso_pu_bacteria 2857720070 2857720295 465
120 iso_pu_bacteria 2928090899 2928091868 465
121 iso_pu_bacteria 2984580707 2984581370 465
122 3300049586 Ga0501070_0000245 Ga0501070_0000245_38677_40248 467
123 iso_pu_bacteria 2643221549 2643767619 467
124 iso_pu_bacteria 2870628048 2870630195 467
125 iso_pu_bacteria 8045830549 8045831020 467
126 3300003578 Ga0006562J51391_1068032 Ga0006562J51391_106803216 468
127 3300006038 Ga0075365_10001078 Ga0075365_100010786 468
128 3300006051 Ga0075364_10024231 Ga0075364_100242312 468
129 iso_pu_bacteria 2643221566 2643848436 468
130 iso_pu_bacteria 2643221597 2643995902 468
131 iso_pu_bacteria 2808606447 2809227269 468
132 iso_pu_bacteria 2811994872 2812322959 468
133 iso_pu_bacteria 2833709550 2833710789 468
134 iso_pu_bacteria 2852632344 2852633350 468
135 3300048917 Ga0496114_0017013 Ga0496114_0017013_1401_3047 469
136 iso_pu_bacteria 2974294766 2974297013 469
137 iso_pu_bacteria 2974324384 2974326753 469
138 3300049570 Ga0501033_0087515 Ga0501033_0087515_413_2059 470
139 3300049579 Ga0501043_0047873 Ga0501043_0047873_1631_3277 470
140 iso_pu_bacteria 2773857758 2774380649 470
141 iso_pu_bacteria 2852632344 2852635630 470
142 iso_pu_bacteria 2904509784 2904512168 470
143 iso_pu_bacteria 2908678064 2908681081 470
144 iso_pu_bacteria 2919069694 2919072449 470
145 iso_pu_bacteria 2977228692 2977231225 470
146 iso_pu_bacteria 2977236895 2977240019 470
147 iso_pu_bacteria 2984542743 2984545707 470
148 iso_pu_bacteria 2844841374 2844842465 472
149 iso_pu_bacteria 2919055335 2919058149 472
150 iso_pu_bacteria 2919523602 2919524524 472
151 iso_pu_bacteria 2928153084 2928156555 472
152 3300003760 Ga0055527_1000001 Ga0055527_1000001103 474
153 3300003763 Ga0055529_1000065 Ga0055529_1000065103 474
154 3300025228 Ga0209672_100006 Ga0209672_100006873 474
155 3300025229 Ga0209147_100389 Ga0209147_10038925 474
156 3300025242 Ga0209258_102438 Ga0209258_1024384 474
157 3300025254 Ga0209148_1000015 Ga0209148_1000015717 474
158 3300025272 Ga0209455_1000013 Ga0209455_1000013717 474
159 3300025230 Ga0209563_101506 Ga0209563_1015063 475
160 3300044719 Ga0466971_0018417 Ga0466971_0018417_673_2241 475
161 3300002067 JGI24735J21928_10006002 JGI24735J21928_100060022 476
162 3300003578 Ga0006562J51391_1185819 Ga0006562J51391_11858193 476
163 3300003578 Ga0006562J51391_1185820 Ga0006562J51391_11858203 476
164 3300020082 Ga0206353_11320462 Ga0206353_113204621 476
165 3300025253 Ga0209677_103860 Ga0209677_1038605 476
166 3300025909 Ga0207705_10045908 Ga0207705_100459082 476
167 3300037418 Ga0395900_0000951 Ga0395900_0000951_10405_12054 476
168 3300037466 Ga0395898_0000677 Ga0395898_0000677_30664_32313 476
169 3300049586 Ga0501070_0000191 Ga0501070_0000191_36328_37914 476

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00795

CN_hydrolase

Carbon-nitrogen hydrolase

280

526

0.91

PF20154

LNT_N

Apolipoprotein N-acyltransferase N-terminal domain

68

230

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
8b0n-assembly1.cif.gz_A cryo-em structure of apolipoprotein n-acyltransferase lnt from e. coli in complex with lyso-pe 0.8103 10 459
5xhq-assembly2.cif.gz_B apolipoprotein n-acyl transferase 0.8008 10 455
8b0o-assembly1.cif.gz_A cryo-em structure apolipoprotein n-acyltransferase lnt from e.coli in complex with fp3 0.8 10 462
5n6h-assembly1.cif.gz_A structure of the membrane integral lipoprotein n-acyltransferase lnt from e. coli 0.796 10 462
6nwr-assembly1.cif.gz_A thioester acyl-intermediate of apolipoprotein n-acyltransferase (lnt) 0.7916 9 459
ID Description Score Start End Superfamily
af_O53493_232_506_3.60.110.10 Alpha Beta;4-Layer Sandwich;Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase;Carbon-nitrogen hydrolase 0.9241 176 436 3.60.110.10
af_O53536_219_350_3.60.110.10 Alpha Beta;4-Layer Sandwich;Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase;Carbon-nitrogen hydrolase 0.8802 177 298 3.60.110.10
af_O53493_232_506_3.60.110.10 Alpha Beta;4-Layer Sandwich;Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase;Carbon-nitrogen hydrolase 0.8756 176 436 3.60.110.10
af_P23930_215_482_3.60.110.10 Alpha Beta;4-Layer Sandwich;Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase;Carbon-nitrogen hydrolase 0.8549 176 434 3.60.110.10
af_P23930_215_482_3.60.110.10 Alpha Beta;4-Layer Sandwich;Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase;Carbon-nitrogen hydrolase 0.8251 176 434 3.60.110.10
ID Description Score Start End GO Terms
AF-A0A067LSE9-F1-model_v4 deleted 0.9538 12 460
AF-A0A522BTM7-F1-model_v4 Apolipoprotein N-acyltransferase 0.949 253 459 GO:0005886
GO:0016410
GO:0042158
AF-A0A4R8Z990-F1-model_v4 Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC 2.3.1.269) 0.9411 1 459 GO:0005886
GO:0016410
GO:0042158
AF-A0A2Z3S272-F1-model_v4 Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC 2.3.1.269) 0.9385 9 458 GO:0005886
GO:0016410
GO:0042158
AF-A0A367Y8P0-F1-model_v4 Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC 2.3.1.269) 0.9377 27 461 GO:0005886
GO:0016410
GO:0042158

Feature Viewer

pLDDT pTM Quality
84.22 0.84 High
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Predicted Structure (AlphaFold2)

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