F255703

General Info

Members Datasets Scaffolds Average Seq Length
169 130 338 250

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2626541554|2626634055
Length 294
Sequence GAVHQREEGPRDRTPLAVGVAGAATAPATEMPSGGRPAPGSEGRVLDLNADLGEGFGIWRLTDDEALLGLVTSANVACGFHAGDPATMRRTCDHAVRLGVRIGAQVGYRDLAGFGRRRIDMDPADLRDDVTYQLGALDAFARAAGDRVRYVKPHGALYNTIVADEDQAQAVVDAVRGYDTALPVLGLPGSVWLRQAAAAGLVTVGEAFADRAYTPAGTLVSRRSPGAVLHDPDAVVARGVRMATEGTVLSEQGTPVRILARSLCVHGDTPGAVEVVRRLRDALRHAGVALSPFC

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
5 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
6 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
11 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
12 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
13 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
14 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
15 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
20 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
21 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
22 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
27 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
34 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
35 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
36 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
37 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
38 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
39 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
42 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
43 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
44 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
45 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
46 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
47 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
48 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
49 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
50 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
51 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
52 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
53 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
54 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
55 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
56 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
57 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
58 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
59 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
60 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
61 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
64 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
65 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
66 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
67 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
68 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
69 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
70 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
71 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
72 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
73 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
74 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
75 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
76 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
77 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
78 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
79 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
80 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
81 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
85 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
86 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
87 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
88 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
89 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
90 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
100 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
101 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
102 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
107 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
108 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
109 2626541554 Frankia sp. AvcI.1 Isolate Nodule
110 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
111 2582580736 Prauserella sp. Am3 Isolate Unclassified
112 2643221548 Streptomyces sp. Root55 Isolate Unclassified
113 2643221578 Streptomyces sp. Root63 Isolate Unclassified
114 2643221604 Nocardioides sp. Root190 Isolate Unclassified
115 2643221617 Nocardioides sp. Root79 Isolate Unclassified
116 2643221620 Nocardioides sp. Root240 Isolate Unclassified
117 2643221647 Streptomyces sp. Root369 Isolate Unclassified
118 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
119 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
120 2738541305 Nocardioides sp. CF167 Isolate Unclassified
121 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
122 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
123 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
124 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
125 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
126 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
127 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
128 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
129 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
130 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.8
Metatranscriptomes 0.59
Isolates 13.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.78
Nodule 0.59
Rhizoplane 0
Rhizosphere 86.39
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10039729 3300003203 Bacteria 1674
2 Ga0006562J51391_1086405 3300003578 Bacteria 2345
3 Ga0070668_100066528 3300005347 Bacteria 2797
4 Ga0070662_100006008 3300005457 Bacteria 7787
5 Ga0070698_100689833 3300005471 Bacteria 963
6 Ga0070699_100114332 3300005518 Bacteria 2371
7 Ga0070679_100147750 3300005530 Bacteria 2328
8 Ga0070686_100455512 3300005544 Bacteria 984
9 Ga0068855_100011521 3300005563 Bacteria 10686
10 Ga0068861_100014451 3300005719 Bacteria 5541
11 Ga0068861_100214489 3300005719 Bacteria 1623
12 Ga0068862_100151961 3300005844 Bacteria 2061
13 Ga0081538_10005623 3300005981 Bacteria 11244
14 Ga0081538_10020048 3300005981 Bacteria 4940
15 Ga0081539_10000182 3300005985 Bacteria 148133
16 Ga0075363_100182828 3300006048 Bacteria 1193
17 Ga0075432_10003571 3300006058 Bacteria 5281
18 Ga0075428_100056070 3300006844 Bacteria 4317
19 Ga0075430_100005405 3300006846 Bacteria 10789
20 Ga0075431_100007700 3300006847 Bacteria 10727
21 Ga0075433_10002438 3300006852 Bacteria 14159
22 Ga0075434_100032966 3300006871 Bacteria 5109
23 Ga0075429_100039437 3300006880 Bacteria 4110
24 Ga0111539_10007620 3300009094 Bacteria 13834
25 Ga0114129_10710739 3300009147 Bacteria 1291
26 Ga0105243_10796856 3300009148 Bacteria 931
27 Ga0105239_10179696 3300010375 Bacteria 2367
28 Ga0105239_10742109 3300010375 Bacteria 1123
29 Ga0213875_10005154 3300021388 Bacteria 7070
30 Ga0207706_10007330 3300025933 Bacteria 10201
31 Ga0207667_10109763 3300025949 Bacteria 2845
32 Ga0207667_10339752 3300025949 Bacteria 1532
33 Ga0207668_10048264 3300025972 Bacteria 2921
34 Ga0207639_10289125 3300026041 Bacteria 1444
35 Ga0207702_10258921 3300026078 Bacteria 1637
36 Ga0207675_100001314 3300026118 Bacteria 24915
37 Ga0207428_10005065 3300027907 Bacteria 12382
38 Ga0307512_10121834 3300030522 Bacteria 1672
39 Ga0307408_100031002 3300031548 Bacteria 3719
40 Ga0307508_10169612 3300031616 Bacteria 1786
41 Ga0307405_10002105 3300031731 Bacteria 8674
42 Ga0307405_10103388 3300031731 Bacteria 1915
43 Ga0307413_10003568 3300031824 Bacteria 6582
44 Ga0307413_10022344 3300031824 Bacteria 3408
45 Ga0307413_10081762 3300031824 Bacteria 2072
46 Ga0307413_10330871 3300031824 Bacteria 1168
47 Ga0307410_10030125 3300031852 Bacteria 3464
48 Ga0307410_10105604 3300031852 Bacteria 2028
49 Ga0307406_10007302 3300031901 Bacteria 6121
50 Ga0307406_10012731 3300031901 Bacteria 4800
51 Ga0307406_10195604 3300031901 Bacteria 1484
52 Ga0307406_10203108 3300031901 Bacteria 1460
53 Ga0307407_10184215 3300031903 Bacteria 1386
54 Ga0307407_10333470 3300031903 Bacteria 1068
55 Ga0307409_100010217 3300031995 Bacteria 5820
56 Ga0307409_100038946 3300031995 Bacteria 3522
57 Ga0307409_100178636 3300031995 Bacteria 1876
58 Ga0307409_100285826 3300031995 Bacteria 1527
59 Ga0307409_100291500 3300031995 Bacteria 1513
60 Ga0307416_100173610 3300032002 Bacteria 2010
61 Ga0307416_100185781 3300032002 Bacteria 1953
62 Ga0307416_100247420 3300032002 Bacteria 1732
63 Ga0307416_100882587 3300032002 Bacteria 993
64 Ga0307414_10250429 3300032004 Bacteria 1472
65 Ga0307415_100002304 3300032126 Bacteria 9468
66 Ga0307415_100009715 3300032126 Bacteria 5412
67 Ga0307415_100085791 3300032126 Bacteria 2263
68 Ga0307415_100521983 3300032126 Bacteria 1042
69 Ga0373933_0031370 3300035724 Bacteria 3083
70 Ga0395900_0093423 3300037418 Bacteria 3090
71 Ga0395900_0154698 3300037418 Bacteria 2342
72 Ga0395898_0003770 3300037466 Bacteria 16776
73 Ga0395898_0063841 3300037466 Bacteria 3573
74 Ga0395898_0086650 3300037466 Bacteria 3018
75 Ga0436364_1256595 3300037853 Bacteria 19343
76 Ga0395901_0121309 3300038443 Bacteria 2747
77 Ga0395901_0145393 3300038443 Bacteria 2492
78 Ga0439450_003716 3300042008 Bacteria 2551
79 Ga0439455_0011375 3300042012 Bacteria 1976
80 Ga0439460_0034000 3300042461 Bacteria 1467
81 Ga0439440_0024349 3300042993 Bacteria 1387
82 Ga0466972_0036863 3300044658 Bacteria 2391
83 Ga0466965_0001110 3300044683 Bacteria 10504
84 Ga0466966_0028461 3300044684 Bacteria 3640
85 Ga0466966_0150705 3300044684 Bacteria 1418
86 Ga0466961_0052486 3300044693 Bacteria 2602
87 Ga0466961_0076031 3300044693 Bacteria 2128
88 Ga0466961_0183043 3300044693 Bacteria 1300
89 Ga0466963_0023061 3300044694 Bacteria 3948
90 Ga0466971_0077942 3300044719 Bacteria 1509
91 Ga0466970_0095864 3300044765 Bacteria 1613
92 Ga0466957_0123611 3300044842 Bacteria 1651
93 Ga0466957_0164216 3300044842 Bacteria 1443
94 Ga0466959_0010078 3300045049 Bacteria 6740
95 Ga0466967_0029766 3300045976 Bacteria 4575
96 Ga0466967_0085166 3300045976 Bacteria 2861
97 Ga0466967_0126679 3300045976 Bacteria 2366
98 Ga0466967_0573016 3300045976 Bacteria 1112
99 Ga0495653_0008390 3300046463 Bacteria 8469
100 Ga0495580_0126526 3300046472 Bacteria 1773
101 Ga0495662_0014990 3300046476 Bacteria 3765
102 Ga0495608_0002406 3300046511 Bacteria 13470
103 Ga0495628_0005970 3300046516 Bacteria 10660
104 Ga0495630_0075751 3300046517 Bacteria 2534
105 Ga0495630_0279530 3300046517 Bacteria 1275
106 Ga0495666_0002884 3300046526 Bacteria 8607
107 Ga0495652_0039942 3300046529 Bacteria 4055
108 Ga0495640_0043611 3300046533 Bacteria 3122
109 Ga0495586_0077978 3300046535 Bacteria 1817
110 Ga0495587_0033566 3300046536 Bacteria 3097
111 Ga0495645_0418106 3300046543 Bacteria 851
112 Ga0495635_0088050 3300046663 Bacteria 2124
113 Ga0495657_0033088 3300046675 Bacteria 3602
114 Ga0495613_0001806 3300046689 Bacteria 16262
115 Ga0495600_0006371 3300046809 Bacteria 7181
116 Ga0495581_0003122 3300047315 Bacteria 9479
117 Ga0495604_0001219 3300047317 Bacteria 21127
118 Ga0495674_0007388 3300047319 Bacteria 10506
119 Ga0495676_0015891 3300047321 Bacteria 6689
120 Ga0495683_0001733 3300047323 Bacteria 13790
121 Ga0495675_0016815 3300047444 Bacteria 4627
122 Ga0495684_0154633 3300047471 Bacteria 1713
123 Ga0495593_0180470 3300047673 Bacteria 1063
124 Ga0495602_0007389 3300048088 Bacteria 11502
125 Ga0495614_0030840 3300048089 Bacteria 2308
126 Ga0501034_0166346 3300049571 Bacteria 2174
127 Ga0501037_0017882 3300049573 Bacteria 5219
128 Ga0501038_0373104 3300049574 Bacteria 1108
129 Ga0501043_0506562 3300049579 Bacteria 901
130 Ga0501046_0033575 3300049580 Bacteria 4144
131 Ga0501047_0000103 3300049581 Bacteria 104053
132 Ga0501047_0054027 3300049581 Bacteria 3885
133 Ga0501044_0031669 3300049823 Bacteria 5565
134 Ga0501044_0084618 3300049823 Bacteria 3205
135 Ga0501044_0213137 3300049823 Bacteria 1885
136 Ga0501045_0235936 3300049824 Bacteria 1362
137 nmdc:mga00v17_240277_c1 3300050491 Bacteria 1174
138 nmdc:mga0yw44_89314_c1 3300050492 Bacteria 1944
139 nmdc:mga05p37_97068_c1 3300050507 Bacteria 3631
140 nmdc:mga0qj67_2182_c1 3300050509 Bacteria 13921
141 nmdc:mga06r32_62335_c1 3300050510 Bacteria 3593
142 nmdc:mga08y16_41490_c1 3300050511 Bacteria 4821
143 nmdc:mga0n895_28978_c1 3300050512 Bacteria 5274
144 nmdc:mga0a205_5383_c1 3300050515 Bacteria 11543
145 Ga0495601_0003618 3300053077 Bacteria 8887
146 Ga0495619_0014613 3300053085 Bacteria 4959
147 2626634055 2626541554 Bacteria 7741902
148 2547406435 2547132111 Bacteria 8013147
149 2583150412 2582580736 Bacteria 5325865
150 2643765001 2643221548 Bacteria 8053412
151 2643900805 2643221578 Bacteria 9213798
152 2644034660 2643221604 Bacteria 5014917
153 2644099033 2643221617 Bacteria 5139111
154 2644114914 2643221620 Bacteria 5134593
155 2644267922 2643221647 Bacteria 10741251
156 2644404974 2643221673 Bacteria 9196637
157 2644461159 2643221682 Bacteria 6743283
158 2738867924 2738541305 Bacteria 4910150
159 2812332245 2811994874 Bacteria 5367947
160 2867304565 2867302475 Bacteria 7087181
161 2867508964 2867507094 Bacteria 6506033
162 2932433332 2932431166 Bacteria 4215299
163 2946048961 2946045630 Bacteria 8527308
164 2954011170 2954002825 Bacteria 9173742
165 3006327798 3006321560 Bacteria 8247479
166 3006495059 3006493962 Bacteria 8825450
167 3006500582 3006493962 Bacteria 8825450
168 8056668324 8056667051 Bacteria 6953971
169 8056830695 8056829672 Bacteria 9045328
170 JGI25406J46586_10039729
171 Ga0006562J51391_1086405
172 Ga0070668_100066528
173 Ga0070662_100006008
174 Ga0070698_100689833
175 Ga0070699_100114332
176 Ga0070679_100147750
177 Ga0070686_100455512
178 Ga0068855_100011521
179 Ga0068861_100014451
180 Ga0068861_100214489
181 Ga0068862_100151961
182 Ga0081538_10005623
183 Ga0081538_10020048
184 Ga0081539_10000182
185 Ga0075363_100182828
186 Ga0075432_10003571
187 Ga0075428_100056070
188 Ga0075430_100005405
189 Ga0075431_100007700
190 Ga0075433_10002438
191 Ga0075434_100032966
192 Ga0075429_100039437
193 Ga0111539_10007620
194 Ga0114129_10710739
195 Ga0105243_10796856
196 Ga0105239_10179696
197 Ga0105239_10742109
198 Ga0213875_10005154
199 Ga0207706_10007330
200 Ga0207667_10109763
201 Ga0207667_10339752
202 Ga0207668_10048264
203 Ga0207639_10289125
204 Ga0207702_10258921
205 Ga0207675_100001314
206 Ga0207428_10005065
207 Ga0307512_10121834
208 Ga0307408_100031002
209 Ga0307508_10169612
210 Ga0307405_10002105
211 Ga0307405_10103388
212 Ga0307413_10003568
213 Ga0307413_10022344
214 Ga0307413_10081762
215 Ga0307413_10330871
216 Ga0307410_10030125
217 Ga0307410_10105604
218 Ga0307406_10007302
219 Ga0307406_10012731
220 Ga0307406_10195604
221 Ga0307406_10203108
222 Ga0307407_10184215
223 Ga0307407_10333470
224 Ga0307409_100010217
225 Ga0307409_100038946
226 Ga0307409_100178636
227 Ga0307409_100285826
228 Ga0307409_100291500
229 Ga0307416_100173610
230 Ga0307416_100185781
231 Ga0307416_100247420
232 Ga0307416_100882587
233 Ga0307414_10250429
234 Ga0307415_100002304
235 Ga0307415_100009715
236 Ga0307415_100085791
237 Ga0307415_100521983
238 Ga0373933_0031370
239 Ga0395900_0093423
240 Ga0395900_0154698
241 Ga0395898_0003770
242 Ga0395898_0063841
243 Ga0395898_0086650
244 Ga0436364_1256595
245 Ga0395901_0121309
246 Ga0395901_0145393
247 Ga0439450_003716
248 Ga0439455_0011375
249 Ga0439460_0034000
250 Ga0439440_0024349
251 Ga0466972_0036863
252 Ga0466965_0001110
253 Ga0466966_0028461
254 Ga0466966_0150705
255 Ga0466961_0052486
256 Ga0466961_0076031
257 Ga0466961_0183043
258 Ga0466963_0023061
259 Ga0466971_0077942
260 Ga0466970_0095864
261 Ga0466957_0123611
262 Ga0466957_0164216
263 Ga0466959_0010078
264 Ga0466967_0029766
265 Ga0466967_0085166
266 Ga0466967_0126679
267 Ga0466967_0573016
268 Ga0495653_0008390
269 Ga0495580_0126526
270 Ga0495662_0014990
271 Ga0495608_0002406
272 Ga0495628_0005970
273 Ga0495630_0075751
274 Ga0495630_0279530
275 Ga0495666_0002884
276 Ga0495652_0039942
277 Ga0495640_0043611
278 Ga0495586_0077978
279 Ga0495587_0033566
280 Ga0495645_0418106
281 Ga0495635_0088050
282 Ga0495657_0033088
283 Ga0495613_0001806
284 Ga0495600_0006371
285 Ga0495581_0003122
286 Ga0495604_0001219
287 Ga0495674_0007388
288 Ga0495676_0015891
289 Ga0495683_0001733
290 Ga0495675_0016815
291 Ga0495684_0154633
292 Ga0495593_0180470
293 Ga0495602_0007389
294 Ga0495614_0030840
295 Ga0501034_0166346
296 Ga0501037_0017882
297 Ga0501038_0373104
298 Ga0501043_0506562
299 Ga0501046_0033575
300 Ga0501047_0000103
301 Ga0501047_0054027
302 Ga0501044_0031669
303 Ga0501044_0084618
304 Ga0501044_0213137
305 Ga0501045_0235936
306 nmdc:mga00v17_240277_c1
307 nmdc:mga0yw44_89314_c1
308 nmdc:mga05p37_97068_c1
309 nmdc:mga0qj67_2182_c1
310 nmdc:mga06r32_62335_c1
311 nmdc:mga08y16_41490_c1
312 nmdc:mga0n895_28978_c1
313 nmdc:mga0a205_5383_c1
314 Ga0495601_0003618
315 Ga0495619_0014613
316 2626634055
317 2547406435
318 2583150412
319 2643765001
320 2643900805
321 2644034660
322 2644099033
323 2644114914
324 2644267922
325 2644404974
326 2644461159
327 2738867924
328 2812332245
329 2867304565
330 2867508964
331 2932433332
332 2946048961
333 2954011170
334 3006327798
335 3006495059
336 3006500582
337 8056668324
338 8056830695

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03746

LamB_YcsF

LamB/YcsF family

46

284

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xu2-assembly1.cif.gz_A crystal structure of the hypothetical protein pa4511 from pseudomonas aeruginosa 0.9592 7 242
1v6t-assembly1.cif.gz_A crystal structure of lactam utilization protein from pyrococcus horikoshii ot3 0.9547 6 254
2dfa-assembly1.cif.gz_A crystal structure of lactam utilization protein from thermus thermophilus hb8 0.948 6 253
1v6t-assembly1.cif.gz_A crystal structure of lactam utilization protein from pyrococcus horikoshii ot3 0.9473 6 254
2dfa-assembly1.cif.gz_A crystal structure of lactam utilization protein from thermus thermophilus hb8 0.9406 6 253
ID Description Score Start End Superfamily
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9669 6 253 3.20.20.370
2x5eA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9616 7 242 3.20.20.370
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9556 6 253 3.20.20.370
1v6tA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9547 6 254 3.20.20.370
2dfaA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.948 6 253 3.20.20.370
ID Description Score Start End GO Terms
AF-A0A429PJH4-F1-model_v4 deleted 0.9997 7 129
AF-A0A7K2PHH1-F1-model_v4 5-oxoprolinase subunit PxpA (EC 3.5.2.9) 0.9971 7 166 GO:0005975
GO:0017168
AF-A0A0K2QWQ0-F1-model_v4 deleted 0.997 22 140
AF-A0A7K2Q8P6-F1-model_v4 LamB/YcsF family protein 0.9962 7 139 GO:0005975
AF-A0A6I1IQM9-F1-model_v4 deleted 0.9945 7 119

Map