F255504

General Info

Members Datasets Scaffolds Average Seq Length
169 128 134 283

Family's Representative Sequence

Representative Sequence 3300049568|Ga0501031_0066974|Ga0501031_0066974_445_1413
Length 322
Sequence VIPLSQLPEDRPQGQGFGGTQRIGEVFWFMDSRKTDVESVRAAYAREMMEASGSDDPRLEQAFAEVPREDFVGPGPWRIMGLKSALAGDRYVETPSADPAHLYRNALVALDAEKGINNGEPALHAAWIGAVAPRPGETVSHLGAGTGYYTAILSRLVLPGGDVHAFEIEPELAERARINLAALVNVEVVEGDAASLPLPASDIIYVNAGVVAPPTGWLHALKPGGRLIFPWRPSEDVALSMLVTRRAAGFEAKPLMPSWFIPCIGASFAERGAKLPNRAEARNIRSVWVKAERPPDATATAIIGDVWFSPEPIAETRSSTSG

Samples

Sample ID Description Type Environment
1 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
2 2508501123 Mesorhizobium sp. WSM3626 Isolate Nodule
3 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
4 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
5 2693429783 Mesorhizobium sp. LCM 4577 Isolate Rhizosphere
6 2693429784 Mesorhizobium sp. LCM 4576 Isolate Rhizosphere
7 2773857925 Microvirga vignae BR3299 Isolate Unclassified
8 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
9 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
10 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
11 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
12 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
13 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
14 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
15 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
16 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
17 2857349434 Mesorhizobium sp. M2E.F.Ca.ET.166.01.1.1 Isolate Nodule
18 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
19 2881147464 Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 Isolate Nodule
20 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
21 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
22 2909042592 Labrys sp. LIt4 Isolate Nodule
23 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
24 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
25 2958064165 Mesorhizobium sp. SARCC-RB16n Isolate Unclassified
26 2968117919 Mesorhizobium atlanticum CNPSo 3140 Isolate Unclassified
27 2977942078 Mesorhizobium sp. M2E.F.Ca.ET.209.01.1.1 Isolate Nodule
28 2987636660 Mesorhizobium sp. M2E.F.Ca.ET.154.01.1.1 Isolate Nodule
29 3004203850 Mesorhizobium sp. M2E.F.Ca.ET.219.01.1.1 Isolate Nodule
30 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
31 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
32 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
33 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
34 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
35 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
36 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
37 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
38 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
39 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
40 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
41 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
42 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
43 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
44 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
45 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
46 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
47 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
48 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
49 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
50 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
51 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
52 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
53 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
56 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
58 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
59 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
60 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
62 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
63 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
72 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
73 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
74 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
79 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
82 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
83 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
84 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
85 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
86 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
87 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
88 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
89 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
90 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
94 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
95 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
96 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
97 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
98 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
108 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
109 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
110 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
111 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
112 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
115 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
118 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
119 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
120 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
121 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
122 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
123 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
124 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
125 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
126 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
127 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
128 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 79.29
Metatranscriptomes 0
Isolates 20.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.43
Nodule 10.65
Rhizoplane 0
Rhizosphere 59.17
Stem 0
Stem Tuber 0
Unclassified 17.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000169 3300001979 Bacteria 26125
2 JGI25155J39150_1000014 3300002704 Bacteria 196159
3 JGI25156J39149_1000037 3300002705 Bacteria 109690
4 JGI25156J39149_1000079 3300002705 Bacteria 73408
5 JGI25162J39368_1000497 3300002737 Bacteria 29860
6 JGI25162J39368_1000992 3300002737 Bacteria 17927
7 JGI25154J39366_1000052 3300002738 Bacteria 120209
8 JGI25157J39369_1000040 3300002741 Bacteria 126165
9 JGI25406J46586_10009380 3300003203 Bacteria 4383
10 JGI25165J46597_1000371 3300003214 Bacteria 50062
11 JGI25165J46597_1000387 3300003214 Bacteria 47369
12 JGI25165J46597_1000462 3300003214 Bacteria 40205
13 rootH2_10220217 3300003320 Bacteria 2612
14 rootL2_10022026 3300003322 Bacteria 7898
15 rootH1_10110627 3300003323 Bacteria 3578
16 rootH1_10132264 3300003323 Bacteria 2443
17 Ga0070709_10077875 3300005434 Bacteria 2156
18 Ga0070681_10077635 3300005458 Unclassified 3278
19 Ga0070681_10454185 3300005458 Bacteria 1194
20 Ga0070699_100253999 3300005518 Unclassified 1571
21 Ga0070679_100300482 3300005530 Bacteria 1556
22 Ga0070665_100139936 3300005548 Bacteria 2424
23 Ga0070665_100343866 3300005548 Bacteria 1497
24 Ga0070704_100048459 3300005549 Bacteria 2974
25 Ga0081539_10000265 3300005985 Bacteria 120457
26 Ga0081539_10002532 3300005985 Bacteria 25506
27 Ga0075365_10313491 3300006038 Bacteria 1104
28 Ga0070716_100025056 3300006173 Bacteria 3179
29 Ga0075369_10019550 3300006186 Bacteria 2766
30 Ga0075435_100063041 3300007076 Bacteria 3010
31 Ga0105238_10008184 3300009551 Bacteria 10458
32 Ga0157370_10278354 3300013104 Unclassified 1546
33 Ga0209435_100027 3300025206 Bacteria 196217
34 Ga0209672_103013 3300025228 Bacteria 3691
35 Ga0209437_100051 3300025233 Bacteria 392523
36 Ga0209437_100060 3300025233 Bacteria 355034
37 Ga0209646_1000086 3300025246 Bacteria 196217
38 Ga0209646_1017548 3300025246 Bacteria 1054
39 Ga0209026_1000082 3300025250 Bacteria 196315
40 Ga0209148_1008933 3300025254 Bacteria 1985
41 Ga0209759_1000063 3300025256 Bacteria 196315
42 Ga0209233_1000095 3300025261 Bacteria 303783
43 Ga0209233_1000190 3300025261 Bacteria 130713
44 Ga0209455_1006990 3300025272 Bacteria 3251
45 Ga0207699_10224946 3300025906 Unclassified 1283
46 Ga0207660_10020164 3300025917 Unclassified 4471
47 Ga0207694_10054320 3300025924 Bacteria 3107
48 Ga0207669_10166857 3300025937 Bacteria 1562
49 Ga0207674_10294972 3300026116 Unclassified 1570
50 Ga0209371_1003106 3300027312 Bacteria 8469
51 Ga0268266_10021491 3300028379 Bacteria 5497
52 Ga0268256_1014517 3300030500 Bacteria 2332
53 Ga0307410_10008883 3300031852 Bacteria 5604
54 Ga0307406_10101477 3300031901 Bacteria 1961
55 Ga0307409_100050882 3300031995 Bacteria 3167
56 Ga0307416_100159389 3300032002 Bacteria 2083
57 Ga0395898_0000840 3300037466 Bacteria 50812
58 Ga0395901_0000132 3300038443 Bacteria 96418
59 Ga0436363_1101227 3300039450 Bacteria 1955
60 Ga0439465_0053483 3300041413 Bacteria 1327
61 Ga0466963_0004974 3300044694 Bacteria 7756
62 Ga0466964_0068842 3300044706 Bacteria 1491
63 Ga0466971_0102955 3300044719 Bacteria 1313
64 Ga0466970_0014248 3300044765 Bacteria 4079
65 Ga0466957_0057731 3300044842 Bacteria 2376
66 Ga0466959_0011033 3300045049 Bacteria 6485
67 Ga0466958_0087360 3300045836 Bacteria 1925
68 Ga0495583_0097847 3300046506 Bacteria 1255
69 Ga0495637_0056070 3300046520 Bacteria 1632
70 Ga0495611_0114904 3300046648 Bacteria 1254
71 Ga0495588_0106513 3300046674 Bacteria 1475
72 Ga0495672_0003531 3300047320 Bacteria 13320
73 Ga0495686_0043325 3300047472 Bacteria 2854
74 Ga0496117_0137251 3300048920 Bacteria 1471
75 Ga0496118_0159994 3300048921 Bacteria 1394
76 Ga0496121_0008192 3300048924 Bacteria 12405
77 Ga0496125_0200699 3300048928 Bacteria 1306
78 Ga0496126_0404642 3300048929 Bacteria 1106
79 Ga0501031_0066974 3300049568 Bacteria 2340
80 Ga0501032_0001447 3300049569 Bacteria 18875
81 Ga0501033_0015917 3300049570 Bacteria 5696
82 Ga0501033_0254078 3300049570 Bacteria 1245
83 Ga0501034_0065995 3300049571 Bacteria 3633
84 Ga0501036_0114061 3300049572 Unclassified 2284
85 Ga0501037_0000274 3300049573 Bacteria 44054
86 Ga0501037_0171338 3300049573 Bacteria 1543
87 Ga0501038_0049923 3300049574 Bacteria 3616
88 Ga0501038_0225707 3300049574 Bacteria 1493
89 Ga0501043_0000008 3300049579 Bacteria 223654
90 Ga0501043_0000446 3300049579 Bacteria 37169
91 Ga0501047_0042780 3300049581 Bacteria 4376
92 Ga0501047_0065049 3300049581 Bacteria 3516
93 Ga0501047_0085444 3300049581 Bacteria 3031
94 Ga0501047_0242446 3300049581 Unclassified 1653
95 Ga0501067_0086617 3300049583 Bacteria 1738
96 Ga0501067_0131074 3300049583 Bacteria 1395
97 Ga0501069_0000028 3300049585 Bacteria 106038
98 Ga0501069_0006999 3300049585 Bacteria 5902
99 Ga0501069_0116265 3300049585 Bacteria 1525
100 Ga0501070_0002621 3300049586 Bacteria 15711
101 Ga0501070_0007356 3300049586 Bacteria 9348
102 Ga0501070_0014619 3300049586 Bacteria 6605
103 Ga0501070_0036175 3300049586 Bacteria 4123
104 Ga0501071_0016114 3300049587 Bacteria 5138
105 Ga0501071_0081313 3300049587 Bacteria 2371
106 Ga0501073_0056857 3300049589 Bacteria 2736
107 Ga0501073_0135923 3300049589 Bacteria 1704
108 Ga0501073_0138664 3300049589 Bacteria 1685
109 Ga0501074_0000362 3300049590 Bacteria 26706
110 Ga0501074_0009910 3300049590 Bacteria 6923
111 Ga0501074_0080124 3300049590 Bacteria 2343
112 Ga0501074_0393620 3300049590 Bacteria 983
113 Ga0501080_0000400 3300049742 Bacteria 33491
114 Ga0501080_0030400 3300049742 Bacteria 5032
115 Ga0501080_0387521 3300049742 Bacteria 1258
116 Ga0501083_0000579 3300049744 Bacteria 23496
117 Ga0501035_0000335 3300049822 Bacteria 54785
118 Ga0501035_0011671 3300049822 Bacteria 8143
119 Ga0501035_0022283 3300049822 Bacteria 5817
120 Ga0501035_0026037 3300049822 Bacteria 5357
121 Ga0501035_0266063 3300049822 Bacteria 1452
122 Ga0501044_0000011 3300049823 Bacteria 257385
123 Ga0501044_0039290 3300049823 Bacteria 4937
124 Ga0501044_0065188 3300049823 Bacteria 3715
125 Ga0501044_0222182 3300049823 Bacteria 1839
126 nmdc:mga0yw44_15474_c1 3300050492 Bacteria 2246
127 nmdc:mga0yw44_462364_c1 3300050492 Bacteria 860
128 nmdc:mga0rr50_92461_c1 3300050513 Bacteria 2358
129 nmdc:mga0sz30_35655_c1 3300050516 Bacteria 2077
130 Ga0500618_006631 3300053125 Bacteria 3378
131 Ga0500642_0291473 3300053130 Unclassified 739
132 Ga0500568_0001156 3300053139 Bacteria 17662
133 Ga0500627_0061484 3300053158 Bacteria 1652
134 Ga0501082_0105791 3300060353 Bacteria 2434

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049574 Ga0501038_0049923 Ga0501038_0049923_1015_1875 213
2 3300050492 nmdc:mga0yw44_462364_c1 nmdc:mga0yw44_462364_c1_129_830 228
3 3300053130 Ga0500642_0291473 Ga0500642_0291473_29_721 229
4 3300048924 Ga0496121_0008192 Ga0496121_0008192_6082_6972 232
5 3300031852 Ga0307410_10008883 Ga0307410_100088832 234
6 3300031901 Ga0307406_10101477 Ga0307406_101014771 234
7 3300031995 Ga0307409_100050882 Ga0307409_1000508822 234
8 3300032002 Ga0307416_100159389 Ga0307416_1001593892 234
9 iso_pu_bacteria 2508501114 2509078611 234
10 iso_pu_bacteria 2773857925 2774874849 234
11 iso_pu_bacteria 2775506901 2776259202 234
12 iso_pu_bacteria 2835312727 2835313672 234
13 iso_pu_bacteria 2882456835 2882459745 234
14 iso_pu_bacteria 2894232714 2894232821 234
15 3300005434 Ga0070709_10077875 Ga0070709_100778752 235
16 3300005458 Ga0070681_10077635 Ga0070681_100776351 235
17 3300007076 Ga0075435_100063041 Ga0075435_1000630414 235
18 3300013104 Ga0157370_10278354 Ga0157370_102783541 235
19 3300025906 Ga0207699_10224946 Ga0207699_102249462 235
20 3300025917 Ga0207660_10020164 Ga0207660_100201643 235
21 3300045049 Ga0466959_0011033 Ga0466959_0011033_4046_4969 235
22 3300049573 Ga0501037_0171338 Ga0501037_0171338_25_828 235
23 3300050513 nmdc:mga0rr50_92461_c1 nmdc:mga0rr50_92461_c1_1095_1985 235
24 3300001979 JGI24740J21852_10000169 JGI24740J21852_100001698 236
25 3300002704 JGI25155J39150_1000014 JGI25155J39150_100001487 236
26 3300002705 JGI25156J39149_1000037 JGI25156J39149_100003724 236
27 3300002705 JGI25156J39149_1000079 JGI25156J39149_100007943 236
28 3300002737 JGI25162J39368_1000497 JGI25162J39368_100049713 236
29 3300002737 JGI25162J39368_1000992 JGI25162J39368_10009921 236
30 3300002738 JGI25154J39366_1000052 JGI25154J39366_100005277 236
31 3300002741 JGI25157J39369_1000040 JGI25157J39369_100004085 236
32 3300003203 JGI25406J46586_10009380 JGI25406J46586_100093802 236
33 3300003214 JGI25165J46597_1000371 JGI25165J46597_100037117 236
34 3300003214 JGI25165J46597_1000387 JGI25165J46597_100038747 236
35 3300003214 JGI25165J46597_1000462 JGI25165J46597_100046220 236
36 3300003320 rootH2_10220217 rootH2_102202172 236
37 3300003322 rootL2_10022026 rootL2_100220266 236
38 3300003323 rootH1_10110627 rootH1_101106273 236
39 3300003323 rootH1_10132264 rootH1_101322641 236
40 3300005458 Ga0070681_10454185 Ga0070681_104541851 236
41 3300005518 Ga0070699_100253999 Ga0070699_1002539992 236
42 3300005530 Ga0070679_100300482 Ga0070679_1003004822 236
43 3300005548 Ga0070665_100139936 Ga0070665_1001399362 236
44 3300005548 Ga0070665_100343866 Ga0070665_1003438662 236
45 3300005549 Ga0070704_100048459 Ga0070704_1000484592 236
46 3300005985 Ga0081539_10000265 Ga0081539_1000026534 236
47 3300005985 Ga0081539_10002532 Ga0081539_1000253211 236
48 3300006038 Ga0075365_10313491 Ga0075365_103134911 236
49 3300006173 Ga0070716_100025056 Ga0070716_1000250564 236
50 3300006186 Ga0075369_10019550 Ga0075369_100195503 236
51 3300009551 Ga0105238_10008184 Ga0105238_100081844 236
52 3300025206 Ga0209435_100027 Ga0209435_10002785 236
53 3300025228 Ga0209672_103013 Ga0209672_1030132 236
54 3300025233 Ga0209437_100051 Ga0209437_10005174 236
55 3300025233 Ga0209437_100060 Ga0209437_100060295 236
56 3300025246 Ga0209646_1000086 Ga0209646_100008685 236
57 3300025246 Ga0209646_1017548 Ga0209646_10175481 236
58 3300025250 Ga0209026_1000082 Ga0209026_100008285 236
59 3300025254 Ga0209148_1008933 Ga0209148_10089332 236
60 3300025256 Ga0209759_1000063 Ga0209759_1000063116 236
61 3300025261 Ga0209233_1000095 Ga0209233_100009567 236
62 3300025261 Ga0209233_1000190 Ga0209233_100019065 236
63 3300025272 Ga0209455_1006990 Ga0209455_10069903 236
64 3300025924 Ga0207694_10054320 Ga0207694_100543202 236
65 3300025937 Ga0207669_10166857 Ga0207669_101668572 236
66 3300026116 Ga0207674_10294972 Ga0207674_102949723 236
67 3300027312 Ga0209371_1003106 Ga0209371_10031062 236
68 3300028379 Ga0268266_10021491 Ga0268266_100214913 236
69 3300030500 Ga0268256_1014517 Ga0268256_10145172 236
70 3300037466 Ga0395898_0000840 Ga0395898_0000840_33616_34569 236
71 3300038443 Ga0395901_0000132 Ga0395901_0000132_68860_69813 236
72 3300039450 Ga0436363_1101227 Ga0436363_1101227_14_802 236
73 3300041413 Ga0439465_0053483 Ga0439465_0053483_467_1312 236
74 3300044694 Ga0466963_0004974 Ga0466963_0004974_6461_7309 236
75 3300044706 Ga0466964_0068842 Ga0466964_0068842_355_1203 236
76 3300044719 Ga0466971_0102955 Ga0466971_0102955_414_1262 236
77 3300044765 Ga0466970_0014248 Ga0466970_0014248_2704_3552 236
78 3300044842 Ga0466957_0057731 Ga0466957_0057731_1042_1890 236
79 3300045836 Ga0466958_0087360 Ga0466958_0087360_547_1395 236
80 3300046506 Ga0495583_0097847 Ga0495583_0097847_392_1240 236
81 3300046520 Ga0495637_0056070 Ga0495637_0056070_423_1271 236
82 3300046648 Ga0495611_0114904 Ga0495611_0114904_387_1235 236
83 3300046674 Ga0495588_0106513 Ga0495588_0106513_298_1146 236
84 3300047320 Ga0495672_0003531 Ga0495672_0003531_8006_8851 236
85 3300047472 Ga0495686_0043325 Ga0495686_0043325_434_1285 236
86 3300048920 Ga0496117_0137251 Ga0496117_0137251_277_1092 236
87 3300048921 Ga0496118_0159994 Ga0496118_0159994_120_962 236
88 3300048928 Ga0496125_0200699 Ga0496125_0200699_299_1141 236
89 3300048929 Ga0496126_0404642 Ga0496126_0404642_127_969 236
90 3300049568 Ga0501031_0066974 Ga0501031_0066974_445_1413 236
91 3300049569 Ga0501032_0001447 Ga0501032_0001447_15183_16151 236
92 3300049570 Ga0501033_0015917 Ga0501033_0015917_2748_3716 236
93 3300049570 Ga0501033_0254078 Ga0501033_0254078_51_911 236
94 3300049571 Ga0501034_0065995 Ga0501034_0065995_501_1361 236
95 3300049572 Ga0501036_0114061 Ga0501036_0114061_859_1722 236
96 3300049573 Ga0501037_0000274 Ga0501037_0000274_16512_17480 236
97 3300049574 Ga0501038_0225707 Ga0501038_0225707_19_882 236
98 3300049579 Ga0501043_0000008 Ga0501043_0000008_975_1835 236
99 3300049579 Ga0501043_0000446 Ga0501043_0000446_3248_4216 236
100 3300049581 Ga0501047_0042780 Ga0501047_0042780_2592_3434 236
101 3300049581 Ga0501047_0065049 Ga0501047_0065049_1672_2514 236
102 3300049581 Ga0501047_0085444 Ga0501047_0085444_127_987 236
103 3300049581 Ga0501047_0242446 Ga0501047_0242446_590_1435 236
104 3300049583 Ga0501067_0086617 Ga0501067_0086617_279_1121 236
105 3300049583 Ga0501067_0131074 Ga0501067_0131074_131_1012 236
106 3300049585 Ga0501069_0000028 Ga0501069_0000028_26808_27776 236
107 3300049585 Ga0501069_0006999 Ga0501069_0006999_4465_5307 236
108 3300049585 Ga0501069_0116265 Ga0501069_0116265_157_999 236
109 3300049586 Ga0501070_0002621 Ga0501070_0002621_2653_3495 236
110 3300049586 Ga0501070_0007356 Ga0501070_0007356_7589_8557 236
111 3300049586 Ga0501070_0014619 Ga0501070_0014619_4792_5634 236
112 3300049586 Ga0501070_0036175 Ga0501070_0036175_1506_2381 236
113 3300049587 Ga0501071_0016114 Ga0501071_0016114_3275_4243 236
114 3300049587 Ga0501071_0081313 Ga0501071_0081313_1381_2223 236
115 3300049589 Ga0501073_0056857 Ga0501073_0056857_1463_2305 236
116 3300049589 Ga0501073_0135923 Ga0501073_0135923_601_1443 236
117 3300049589 Ga0501073_0138664 Ga0501073_0138664_370_1338 236
118 3300049590 Ga0501074_0000362 Ga0501074_0000362_7940_8908 236
119 3300049590 Ga0501074_0009910 Ga0501074_0009910_4686_5528 236
120 3300049590 Ga0501074_0080124 Ga0501074_0080124_116_976 236
121 3300049590 Ga0501074_0393620 Ga0501074_0393620_67_912 236
122 3300049742 Ga0501080_0000400 Ga0501080_0000400_30018_30860 236
123 3300049742 Ga0501080_0030400 Ga0501080_0030400_3213_4181 236
124 3300049742 Ga0501080_0387521 Ga0501080_0387521_160_1020 236
125 3300049744 Ga0501083_0000579 Ga0501083_0000579_3254_4222 236
126 3300049822 Ga0501035_0000335 Ga0501035_0000335_18373_19341 236
127 3300049822 Ga0501035_0011671 Ga0501035_0011671_2622_3464 236
128 3300049822 Ga0501035_0022283 Ga0501035_0022283_1492_2367 236
129 3300049822 Ga0501035_0026037 Ga0501035_0026037_4443_5285 236
130 3300049822 Ga0501035_0266063 Ga0501035_0266063_196_1041 236
131 3300049823 Ga0501044_0000011 Ga0501044_0000011_89499_90467 236
132 3300049823 Ga0501044_0039290 Ga0501044_0039290_3700_4575 236
133 3300049823 Ga0501044_0065188 Ga0501044_0065188_242_1084 236
134 3300049823 Ga0501044_0222182 Ga0501044_0222182_138_980 236
135 3300050492 nmdc:mga0yw44_15474_c1 nmdc:mga0yw44_15474_c1_428_1273 236
136 3300050516 nmdc:mga0sz30_35655_c1 nmdc:mga0sz30_35655_c1_207_1052 236
137 3300053125 Ga0500618_006631 Ga0500618_006631_686_1534 236
138 3300053139 Ga0500568_0001156 Ga0500568_0001156_11193_12077 236
139 3300053158 Ga0500627_0061484 Ga0500627_0061484_310_1164 236
140 3300060353 Ga0501082_0105791 Ga0501082_0105791_1057_2025 236
141 iso_pu_bacteria 2508501123 2509117939 236
142 iso_pu_bacteria 2615840698 2616554466 236
143 iso_pu_bacteria 2617270742 2617384829 236
144 iso_pu_bacteria 2693429783 2694632477 236
145 iso_pu_bacteria 2693429784 2694638650 236
146 iso_pu_bacteria 2775507266 2778175648 236
147 iso_pu_bacteria 2818991448 2819609356 236
148 iso_pu_bacteria 2838029111 2838033384 236
149 iso_pu_bacteria 2842475841 2842479950 236
150 iso_pu_bacteria 2842482326 2842483851 236
151 iso_pu_bacteria 2842502639 2842505265 236
152 iso_pu_bacteria 2842922631 2842926774 236
153 iso_pu_bacteria 2857349434 2857351424 236
154 iso_pu_bacteria 2857531043 2857533500 236
155 iso_pu_bacteria 2881147464 2881150906 236
156 iso_pu_bacteria 2909042592 2909046018 236
157 iso_pu_bacteria 2919408235 2919410218 236
158 iso_pu_bacteria 2926754445 2926759119 236
159 iso_pu_bacteria 2926754445 2926759857 236
160 iso_pu_bacteria 2958064165 2958069318 236
161 iso_pu_bacteria 2968117919 2968119712 236
162 iso_pu_bacteria 2977942078 2977945244 236
163 iso_pu_bacteria 2987636660 2987638608 236
164 iso_pu_bacteria 3004203850 3004205149 236
165 iso_pu_bacteria 3005416602 3005418961 236
166 iso_pu_bacteria 8005314921 8005318147 236
167 iso_pu_bacteria 8005484373 8005488976 236
168 iso_pu_bacteria 8005645114 8005646057 236
169 iso_pu_bacteria 8005682033 8005682668 236

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08241

Methyltransf_11

Methyltransferase domain

140

212

0.9

PF01135

PCMT

Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

82

267

0.84

PF13649

Methyltransf_25

Methyltransferase domain

139

225

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
4o29-assembly1.cif.gz_A protein-l-isoaspartate o-methyltransferase from pyrobaculum aerophilum in complex with s-adenosyl-l-homocysteine 0.9375 38 186
1vbf-assembly1.cif.gz_B crystal structure of protein l-isoaspartate o-methyltransferase homologue from sulfolobus tokodaii 0.9228 38 183
2yxe-assembly1.cif.gz_B crystal structure of l-isoaspartyl protein carboxyl methyltranferase 0.9143 23 192
4l7v-assembly1.cif.gz_A crystal structure of protein l-isoaspartyl-o-methyltransferase of vibrio cholerae 0.9042 42 190
1kr5-assembly1.cif.gz_A crystal structure of human l-isoaspartyl methyltransferase 0.8969 26 189
ID Description Score Start End Superfamily
af_Q4E3J0_145_404_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9501 59 119 3.40.50.150
4o29A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9375 38 186 3.40.50.150
af_F4JZ42_97_383_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9196 51 122 3.40.50.150
af_C7J169_1_82_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9103 45 110 3.40.50.150
4l7vA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9042 42 190 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A1C3XW35-F1-model_v4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 0.9844 47 145 GO:0008168
GO:0032259
AF-A0A440EH27-F1-model_v4 deleted 0.9684 91 236
AF-A0A529FIF8-F1-model_v4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (L-isoaspartyl protein carboxyl methyltransferase) (Protein L-isoaspartyl methyltransferase) (Protein-beta-aspartate methyltransferase) 0.9656 2 184 GO:0004719
GO:0005737
GO:0032259
GO:0036211
AF-A0A529UEC2-F1-model_v4 deleted 0.9623 106 236
AF-A0A6N6S9X9-F1-model_v4 Methyltransferase domain-containing protein 0.9598 46 115 GO:0008168
GO:0032259

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pLDDT pTM Quality
93.35 0.92 High
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Predicted Structure (AlphaFold2)

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