F255387

General Info

Members Datasets Scaffolds Average Seq Length
169 105 338 485

Family's Representative Sequence

Representative Sequence 3300046533|Ga0495640_0119068|Ga0495640_0119068_32_1624
Length 530
Sequence MQLPLCRSTSLASQKIRVHPDATTAKLPLQIMDYEVVIGLETHVQLKTKSKMWCGCANHFGSPPNTNVCPVCLGLPGVLPVANEEALKLTALTGLLLNCEIPPRAKFDRKNYFYPDMPKNYQITQYDQPSTANGYMDFEFKGGIARVRITRAHLEEDVGKSFHFERNSGVDFNRAGVPLMEIVSEPDLTGADMAYEYLNALKDILVYGGVSDCDMEKGMVRCDVNVSVRPLGTKELGAKIEIKNMNSFSGVRHALEYEIPRQIEVLKTGGKLIQSTRRWDDVAGVTEEMRTKEHAHDYRYFPDPDLMPFAPTATWLAEVKSRAVELPLARKQRFMKDYSLPASDAQTFVWDLPLGNYFEGIAKQSKNPKTIANWVINNLRAKLTEANEGSRRGNEADALSGHENPPPHVGGNLTLADLKFKPEALLELVNLVESKTISSSAAQQVFAEMFDTGKSPAAIVQEKGLVQVSDTAAIEKFCDEAITANPGPAADFKAGKAAALNFLKGQVMKLSKGKANPALAGEILERQLRH

Samples

Sample ID Description Type Environment
1 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
2 3300002155 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
29 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
35 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
52 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
53 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
54 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
55 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
58 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
59 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
60 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
61 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
62 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
63 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
64 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
65 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
66 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
67 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
68 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
69 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
70 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
71 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
72 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
73 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
74 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
75 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
76 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
79 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
82 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
86 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
87 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
88 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
89 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
90 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
91 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
92 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
93 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
94 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
95 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
96 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
97 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
98 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
99 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
104 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
105 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.41
Metatranscriptomes 0
Isolates 0.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.59
Nodule 0
Rhizoplane 0.59
Rhizosphere 95.86
Stem 0
Stem Tuber 0
Unclassified 1.18

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495640_0119068 3300046533 Bacteria 1718
2 JGI24033J26618_1000096 3300002155 Bacteria 12503
3 Ga0070658_10001585 3300005327 Bacteria 19240
4 Ga0070690_100004386 3300005330 Bacteria 7828
5 Ga0070670_100013212 3300005331 Bacteria 7073
6 Ga0070666_10026740 3300005335 Bacteria 3773
7 Ga0070689_100015553 3300005340 Bacteria 5551
8 Ga0070689_100112066 3300005340 Bacteria 2171
9 Ga0070669_100044301 3300005353 Bacteria 3242
10 Ga0070671_100026878 3300005355 Bacteria 4734
11 Ga0070673_100022003 3300005364 Bacteria 4634
12 Ga0070659_100023580 3300005366 Bacteria 4711
13 Ga0070714_100071835 3300005435 Bacteria 2994
14 Ga0070694_100002947 3300005444 Bacteria 10118
15 Ga0070708_100001155 3300005445 Bacteria 20303
16 Ga0070681_10023370 3300005458 Bacteria 6217
17 Ga0070686_100000952 3300005544 Bacteria 16685
18 Ga0070686_100005477 3300005544 Bacteria 7030
19 Ga0068855_100133258 3300005563 Bacteria 2836
20 Ga0068857_100002184 3300005577 Bacteria 15915
21 Ga0068856_100000311 3300005614 Bacteria 53369
22 Ga0068859_100003806 3300005617 Bacteria 15397
23 Ga0068864_100234326 3300005618 Bacteria 1699
24 Ga0068862_100208550 3300005844 Bacteria 1765
25 Ga0068871_100052068 3300006358 Bacteria 3314
26 Ga0075428_100026634 3300006844 Bacteria 6402
27 Ga0097620_100003806 3300006931 Bacteria 15397
28 Ga0105240_10000092 3300009093 Bacteria 182449
29 Ga0105240_10059250 3300009093 Bacteria 4779
30 Ga0105240_10096657 3300009093 Bacteria 3599
31 Ga0105240_10171263 3300009093 Bacteria 2571
32 Ga0111539_10047245 3300009094 Bacteria 5146
33 Ga0105242_10006917 3300009176 Bacteria 8752
34 Ga0105238_10025849 3300009551 Bacteria 5985
35 Ga0105238_10072600 3300009551 Bacteria 3436
36 Ga0157369_10284944 3300013105 Bacteria 1720
37 Ga0163162_10135003 3300013306 Bacteria 2578
38 Ga0157375_10000016 3300013308 Bacteria 295002
39 Ga0163163_10000010 3300014325 Bacteria 264773
40 Ga0163163_10148394 3300014325 Bacteria 2389
41 Ga0213876_10004304 3300021384 Bacteria 7979
42 Ga0213876_10011122 3300021384 Bacteria 4813
43 Ga0207705_10056298 3300025909 Bacteria 2835
44 Ga0207684_10023664 3300025910 Bacteria 5243
45 Ga0207707_10140398 3300025912 Bacteria 2112
46 Ga0207693_10073462 3300025915 Bacteria 2677
47 Ga0207663_10006008 3300025916 Bacteria 6172
48 Ga0207646_10003965 3300025922 Bacteria 16416
49 Ga0207694_10066095 3300025924 Bacteria 2820
50 Ga0207664_10060247 3300025929 Bacteria 3025
51 Ga0207670_10000636 3300025936 Bacteria 18770
52 Ga0207670_10001159 3300025936 Bacteria 13896
53 Ga0207691_10103301 3300025940 Unclassified 2541
54 Ga0207667_10032601 3300025949 Bacteria 5611
55 Ga0207667_10055032 3300025949 Bacteria 4184
56 Ga0207651_10132620 3300025960 Bacteria 1910
57 Ga0207702_10000274 3300026078 Bacteria 59342
58 Ga0207702_10022985 3300026078 Bacteria 5172
59 Ga0207641_10061757 3300026088 Bacteria 3196
60 Ga0207641_10211175 3300026088 Bacteria 1795
61 Ga0207674_10002977 3300026116 Bacteria 21030
62 Ga0207683_10144108 3300026121 Bacteria 2147
63 Ga0265337_1001208 3300028556 Bacteria 13148
64 Ga0265337_1004256 3300028556 Bacteria 5979
65 Ga0265337_1004602 3300028556 Bacteria 5683
66 Ga0265337_1015040 3300028556 Bacteria 2546
67 Ga0265326_10002755 3300028558 Bacteria 5892
68 Ga0265319_1000004 3300028563 Bacteria 305085
69 Ga0265319_1004808 3300028563 Bacteria 6618
70 Ga0265323_10000807 3300028653 Bacteria 16828
71 Ga0265336_10001551 3300028666 Bacteria 10305
72 Ga0265336_10023050 3300028666 Bacteria 1978
73 Ga0265338_10000048 3300028800 Bacteria 218859
74 Ga0265338_10000129 3300028800 Bacteria 138608
75 Ga0265338_10000332 3300028800 Bacteria 85993
76 Ga0265338_10000483 3300028800 Bacteria 71199
77 Ga0265338_10001063 3300028800 Bacteria 45630
78 Ga0265338_10001418 3300028800 Bacteria 39001
79 Ga0265338_10001539 3300028800 Bacteria 37247
80 Ga0265338_10001689 3300028800 Bacteria 35059
81 Ga0265338_10001706 3300028800 Bacteria 34854
82 Ga0265338_10004051 3300028800 Bacteria 20096
83 Ga0265338_10008402 3300028800 Bacteria 12542
84 Ga0265338_10024911 3300028800 Bacteria 6094
85 Ga0265338_10029903 3300028800 Bacteria 5387
86 Ga0265338_10034133 3300028800 Bacteria 4922
87 Ga0265338_10039436 3300028800 Bacteria 4454
88 Ga0265338_10090699 3300028800 Bacteria 2529
89 Ga0265324_10000546 3300029957 Bacteria 25761
90 Ga0265324_10000733 3300029957 Bacteria 21879
91 Ga0265324_10026891 3300029957 Bacteria 2035
92 Ga0265324_10030132 3300029957 Bacteria 1905
93 Ga0265320_10001505 3300031240 Bacteria 16982
94 Ga0265320_10002084 3300031240 Bacteria 14082
95 Ga0265320_10006849 3300031240 Bacteria 7137
96 Ga0265320_10007939 3300031240 Bacteria 6546
97 Ga0265320_10040663 3300031240 Bacteria 2317
98 Ga0265329_10010270 3300031242 Bacteria 3447
99 Ga0265340_10007308 3300031247 Bacteria 6003
100 Ga0265339_10062296 3300031249 Bacteria 2005
101 Ga0265327_10000215 3300031251 Bacteria 119243
102 Ga0265316_10035020 3300031344 Bacteria 4074
103 Ga0265316_10097657 3300031344 Bacteria 2235
104 Ga0265313_10003525 3300031595 Bacteria 12620
105 Ga0265313_10023648 3300031595 Bacteria 3305
106 Ga0265314_10000234 3300031711 Bacteria 82654
107 Ga0265314_10036119 3300031711 Bacteria 3594
108 Ga0265314_10075938 3300031711 Bacteria 2234
109 Ga0373928_0000461 3300035084 Bacteria 8033
110 Ga0373944_0000155 3300035089 Bacteria 13498
111 Ga0373949_0001193 3300035090 Bacteria 7709
112 Ga0373951_0007272 3300035091 Bacteria 2519
113 Ga0373932_0000001 3300035112 Bacteria 1459067
114 Ga0373946_0016682 3300035171 Bacteria 2801
115 Ga0373962_0000533 3300035242 Bacteria 8524
116 Ga0373931_0000008 3300035691 Bacteria 362269
117 Ga0373935_0025918 3300035692 Bacteria 3614
118 Ga0373927_0002505 3300035695 Bacteria 13406
119 Ga0373927_0021006 3300035695 Bacteria 4279
120 Ga0373927_0027692 3300035695 Bacteria 3700
121 Ga0373947_0061853 3300035725 Bacteria 2276
122 Ga0373937_0086005 3300036401 Unclassified 2910
123 Ga0373937_0089269 3300036401 Bacteria 2854
124 Ga0373937_0110512 3300036401 Bacteria 2556
125 Ga0316584_0073620 3300036712 Bacteria 2561
126 Ga0373925_0000907 3300037068 Bacteria 27030
127 Ga0373925_0003103 3300037068 Bacteria 13032
128 Ga0373925_0025376 3300037068 Bacteria 4329
129 Ga0395905_0144455 3300037471 Bacteria 2239
130 Ga0436365_0837592 3300039437 Archaea 3621
131 Ga0436365_1092468 3300039437 Bacteria 11894
132 Ga0451577_0001863 3300042876 Bacteria 26879
133 Ga0451577_0005005 3300042876 Bacteria 13734
134 Ga0451577_0011297 3300042876 Bacteria 8455
135 Ga0453684_0002261 3300044712 Bacteria 47581
136 Ga0453684_0004472 3300044712 Bacteria 29443
137 Ga0453684_0065826 3300044712 Bacteria 4619
138 Ga0453684_0070043 3300044712 Bacteria 4444
139 Ga0453684_0110375 3300044712 Bacteria 3343
140 Ga0451576_0007514 3300045051 Bacteria 13003
141 Ga0451576_0099990 3300045051 Bacteria 3017
142 Ga0451576_0146801 3300045051 Bacteria 2459
143 Ga0495582_0008558 3300046473 Bacteria 5645
144 Ga0495662_0062048 3300046476 Bacteria 1806
145 Ga0495618_0004819 3300046514 Bacteria 8242
146 Ga0495618_0155565 3300046514 Bacteria 1459
147 Ga0495628_0043478 3300046516 Bacteria 3579
148 Ga0495630_0002526 3300046517 Bacteria 12691
149 Ga0495630_0015272 3300046517 Bacteria 5604
150 Ga0495666_0004209 3300046526 Bacteria 7260
151 Ga0495640_0004635 3300046533 Bacteria 10964
152 Ga0495586_0000064 3300046535 Bacteria 65287
153 Ga0495586_0006393 3300046535 Bacteria 6295
154 Ga0495587_0041637 3300046536 Bacteria 2740
155 Ga0495645_0031176 3300046543 Bacteria 3884
156 Ga0495634_0004729 3300046642 Bacteria 10594
157 Ga0495634_0010798 3300046642 Bacteria 6680
158 Ga0495658_0018222 3300046683 Bacteria 3646
159 Ga0495658_0075279 3300046683 Bacteria 1969
160 Ga0495674_0000496 3300047319 Bacteria 35977
161 Ga0495680_0032028 3300047322 Bacteria 4272
162 Ga0495684_0052894 3300047471 Bacteria 3099
163 Ga0496106_0058052 3300048909 Bacteria 2929
164 Ga0501032_0002706 3300049569 Bacteria 13828
165 Ga0501033_0014615 3300049570 Bacteria 5962
166 Ga0501044_0000442 3300049823 Bacteria 50741
167 nmdc:mga08y16_102620_c1 3300050511 Bacteria 2978
168 Ga0500650_0008024 3300053098 Bacteria 4151
169 2787507065 2786546548 Bacteria 4745694
170 Ga0495640_0119068
171 JGI24033J26618_1000096
172 Ga0070658_10001585
173 Ga0070690_100004386
174 Ga0070670_100013212
175 Ga0070666_10026740
176 Ga0070689_100015553
177 Ga0070689_100112066
178 Ga0070669_100044301
179 Ga0070671_100026878
180 Ga0070673_100022003
181 Ga0070659_100023580
182 Ga0070714_100071835
183 Ga0070694_100002947
184 Ga0070708_100001155
185 Ga0070681_10023370
186 Ga0070686_100000952
187 Ga0070686_100005477
188 Ga0068855_100133258
189 Ga0068857_100002184
190 Ga0068856_100000311
191 Ga0068859_100003806
192 Ga0068864_100234326
193 Ga0068862_100208550
194 Ga0068871_100052068
195 Ga0075428_100026634
196 Ga0097620_100003806
197 Ga0105240_10000092
198 Ga0105240_10059250
199 Ga0105240_10096657
200 Ga0105240_10171263
201 Ga0111539_10047245
202 Ga0105242_10006917
203 Ga0105238_10025849
204 Ga0105238_10072600
205 Ga0157369_10284944
206 Ga0163162_10135003
207 Ga0157375_10000016
208 Ga0163163_10000010
209 Ga0163163_10148394
210 Ga0213876_10004304
211 Ga0213876_10011122
212 Ga0207705_10056298
213 Ga0207684_10023664
214 Ga0207707_10140398
215 Ga0207693_10073462
216 Ga0207663_10006008
217 Ga0207646_10003965
218 Ga0207694_10066095
219 Ga0207664_10060247
220 Ga0207670_10000636
221 Ga0207670_10001159
222 Ga0207691_10103301
223 Ga0207667_10032601
224 Ga0207667_10055032
225 Ga0207651_10132620
226 Ga0207702_10000274
227 Ga0207702_10022985
228 Ga0207641_10061757
229 Ga0207641_10211175
230 Ga0207674_10002977
231 Ga0207683_10144108
232 Ga0265337_1001208
233 Ga0265337_1004256
234 Ga0265337_1004602
235 Ga0265337_1015040
236 Ga0265326_10002755
237 Ga0265319_1000004
238 Ga0265319_1004808
239 Ga0265323_10000807
240 Ga0265336_10001551
241 Ga0265336_10023050
242 Ga0265338_10000048
243 Ga0265338_10000129
244 Ga0265338_10000332
245 Ga0265338_10000483
246 Ga0265338_10001063
247 Ga0265338_10001418
248 Ga0265338_10001539
249 Ga0265338_10001689
250 Ga0265338_10001706
251 Ga0265338_10004051
252 Ga0265338_10008402
253 Ga0265338_10024911
254 Ga0265338_10029903
255 Ga0265338_10034133
256 Ga0265338_10039436
257 Ga0265338_10090699
258 Ga0265324_10000546
259 Ga0265324_10000733
260 Ga0265324_10026891
261 Ga0265324_10030132
262 Ga0265320_10001505
263 Ga0265320_10002084
264 Ga0265320_10006849
265 Ga0265320_10007939
266 Ga0265320_10040663
267 Ga0265329_10010270
268 Ga0265340_10007308
269 Ga0265339_10062296
270 Ga0265327_10000215
271 Ga0265316_10035020
272 Ga0265316_10097657
273 Ga0265313_10003525
274 Ga0265313_10023648
275 Ga0265314_10000234
276 Ga0265314_10036119
277 Ga0265314_10075938
278 Ga0373928_0000461
279 Ga0373944_0000155
280 Ga0373949_0001193
281 Ga0373951_0007272
282 Ga0373932_0000001
283 Ga0373946_0016682
284 Ga0373962_0000533
285 Ga0373931_0000008
286 Ga0373935_0025918
287 Ga0373927_0002505
288 Ga0373927_0021006
289 Ga0373927_0027692
290 Ga0373947_0061853
291 Ga0373937_0086005
292 Ga0373937_0089269
293 Ga0373937_0110512
294 Ga0316584_0073620
295 Ga0373925_0000907
296 Ga0373925_0003103
297 Ga0373925_0025376
298 Ga0395905_0144455
299 Ga0436365_0837592
300 Ga0436365_1092468
301 Ga0451577_0001863
302 Ga0451577_0005005
303 Ga0451577_0011297
304 Ga0453684_0002261
305 Ga0453684_0004472
306 Ga0453684_0065826
307 Ga0453684_0070043
308 Ga0453684_0110375
309 Ga0451576_0007514
310 Ga0451576_0099990
311 Ga0451576_0146801
312 Ga0495582_0008558
313 Ga0495662_0062048
314 Ga0495618_0004819
315 Ga0495618_0155565
316 Ga0495628_0043478
317 Ga0495630_0002526
318 Ga0495630_0015272
319 Ga0495666_0004209
320 Ga0495640_0004635
321 Ga0495586_0000064
322 Ga0495586_0006393
323 Ga0495587_0041637
324 Ga0495645_0031176
325 Ga0495634_0004729
326 Ga0495634_0010798
327 Ga0495658_0018222
328 Ga0495658_0075279
329 Ga0495674_0000496
330 Ga0495680_0032028
331 Ga0495684_0052894
332 Ga0496106_0058052
333 Ga0501032_0002706
334 Ga0501033_0014615
335 Ga0501044_0000442
336 nmdc:mga08y16_102620_c1
337 Ga0500650_0008024
338 2787507065

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02934

GatB_N

GatB/GatE catalytic domain

36

317

0.99

PF02637

GatB_Yqey

GatB domain

410

528

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
3h0l-assembly2.cif.gz_E structure of trna-dependent amidotransferase gatcab from aquifex aeolicus 0.8993 5 421
3h0l-assembly2.cif.gz_E structure of trna-dependent amidotransferase gatcab from aquifex aeolicus 0.8931 5 421
2g5h-assembly1.cif.gz_B structure of trna-dependent amidotransferase gatcab 0.8751 6 405
4wj3-assembly2.cif.gz_H crystal structure of the asparagine transamidosome from pseudomonas aeruginosa 0.8587 6 405
4n0i-assembly1.cif.gz_B crystal structure of s. cerevisiae mitochondrial gatfab in complex with glutamine 0.8573 6 308
ID Description Score Start End Superfamily
af_Q9VCD0_451_513_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 1.009 426 484 1.10.10.410
af_Q57624_410_472_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.98 424 486 1.10.10.410
af_Q2FWZ0_412_475_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.9751 424 485 1.10.10.410
af_Q57624_410_472_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.965 424 486 1.10.10.410
af_M0R4L6_495_556_1.10.10.410 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A; 0.9627 424 484 1.10.10.410
ID Description Score Start End GO Terms
AF-A0A3D4CTH4-F1-model_v4 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB 0.9771 172 282 GO:0005524
GO:0006412
GO:0016740
GO:0050567
GO:0070681
AF-A0A535EUH9-F1-model_v4 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB 0.9712 157 268 GO:0005524
GO:0006412
GO:0016740
GO:0050567
GO:0070681
AF-A0A850LUN4-F1-model_v4 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B 0.97 393 485 GO:0005524
GO:0006412
GO:0016740
GO:0016884
AF-A0A3D4CTH4-F1-model_v4 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB 0.9685 172 282 GO:0005524
GO:0006412
GO:0016740
GO:0050567
GO:0070681
AF-A0A535EUH9-F1-model_v4 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB 0.9627 157 268 GO:0005524
GO:0006412
GO:0016740
GO:0050567
GO:0070681

Map