F255229

General Info

Members Datasets Scaffolds Average Seq Length
169 128 151 404

Family's Representative Sequence

Representative Sequence 3300042435|Ga0439434_0007320|Ga0439434_0007320_1068_2405
Length 445
Sequence MPAARPTFCAIVLPPAAAIVTPLPQCGAPVYWRGLRERGHMPDTIVVAGGGHAAAQVVDSLRRDGFEGRLVLACGEPALPYQRPPLSKKFLGGELDAERLPIRHAAYYEGIRCEVLLGNPVVGIDKWKRTVKLSDGGSLEYDKLVLAIGGHARPLPVRGANFPGVHVLRTMADVEAIRARARPGVRVAVVGAGYIGLECAATFRRMGLDVTVIEMMDRVMNRVVAPEMSGFYQAEHAAHGVNVLTERTVQGFLGNGSVHAVECTDGTQVPADLVIVGIGLVPNCALAEAAGLKCDDGIAVDEHCRTSDPHIYAIGDCCSHPSPRYGRRIRLESVDNAFEQAKSAAANLCGKATPHDKTPWFWSDQYELKLQIVGLSQNYDSVVLRGDPASRSFSCCYLKDGELIALDAVNHAKDFMAARKLIAERARPDPAKLADDSVGLKETIT

Samples

Sample ID Description Type Environment
1 2506783011 Frankia datiscae Dg1 Isolate Nodule
2 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
3 2643221618 Ensifer sp. Root231 Isolate Unclassified
4 2643221626 Ensifer sp. Root31 Isolate Unclassified
5 2643221655 Ensifer sp. Root1252 Isolate Unclassified
6 2643221659 Ensifer sp. Root127 Isolate Unclassified
7 2643221698 Ensifer sp. Root142 Isolate Unclassified
8 2643221712 Ensifer sp. Root258 Isolate Unclassified
9 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
10 2773857933 Frankia sp. BMG5.30 Isolate Nodule
11 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
12 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
13 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
14 2844163670 Ensifer sp. 1H6 Isolate Unclassified
15 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
16 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
17 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
18 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
19 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
20 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
22 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
23 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
24 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
25 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
26 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
27 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
28 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
29 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
30 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
31 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
40 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
43 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
44 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
45 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
51 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
52 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
53 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
67 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
68 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
71 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
72 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
73 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
74 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
77 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
78 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
79 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
80 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
81 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
82 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
83 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
84 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
85 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
86 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
87 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
88 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
89 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
93 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
94 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
105 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
106 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
107 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
108 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
109 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
110 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
111 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
112 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
113 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
114 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
115 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
116 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
119 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
122 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
123 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
124 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
125 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
126 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
127 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
128 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.35
Metatranscriptomes 0
Isolates 10.65

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.92
Nodule 1.18
Rhizoplane 0.59
Rhizosphere 82.84
Stem 0
Stem Tuber 0
Unclassified 9.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000016 3300002987 Bacteria 139656
2 JGI25406J46586_10019109 3300003203 Bacteria 2801
3 rootH2_10242261 3300003320 Bacteria 2397
4 Ga0070677_10002204 3300005333 Bacteria 6229
5 Ga0070682_100128005 3300005337 Bacteria 1715
6 Ga0070668_100160022 3300005347 Bacteria 1826
7 Ga0070675_100117595 3300005354 Bacteria 2256
8 Ga0070714_100024924 3300005435 Bacteria 4932
9 Ga0070706_100002792 3300005467 Bacteria 17461
10 Ga0070707_100001310 3300005468 Bacteria 24486
11 Ga0070698_100001705 3300005471 Bacteria 24505
12 Ga0070672_100164536 3300005543 Bacteria 1842
13 Ga0070696_100000081 3300005546 Bacteria 47585
14 Ga0070665_100016791 3300005548 Bacteria 7340
15 Ga0070665_100035419 3300005548 Bacteria 5019
16 Ga0070665_100036245 3300005548 Bacteria 4962
17 Ga0070665_100073505 3300005548 Bacteria 3424
18 Ga0068859_100096972 3300005617 Bacteria 3001
19 Ga0068860_100101242 3300005843 Bacteria 2749
20 Ga0068862_100079712 3300005844 Bacteria 2839
21 Ga0081455_10000478 3300005937 Bacteria 51872
22 Ga0081455_10011980 3300005937 Bacteria 8680
23 Ga0081538_10015254 3300005981 Bacteria 5959
24 Ga0081539_10000055 3300005985 Bacteria 257359
25 Ga0081539_10057732 3300005985 Bacteria 2145
26 Ga0075368_10069448 3300006042 Bacteria 1421
27 Ga0075362_10010376 3300006177 Bacteria 3635
28 Ga0097621_100129944 3300006237 Bacteria 2143
29 Ga0075370_10012544 3300006353 Bacteria 4483
30 Ga0075428_100042068 3300006844 Bacteria 5025
31 Ga0075428_100099736 3300006844 Bacteria 3167
32 Ga0075428_100380746 3300006844 Bacteria 1513
33 Ga0075433_10007561 3300006852 Bacteria 8619
34 Ga0075434_100007969 3300006871 Bacteria 9820
35 Ga0097620_100096973 3300006931 Bacteria 3001
36 Ga0099795_10000992 3300007788 Bacteria 5808
37 Ga0105240_10053295 3300009093 Bacteria 5078
38 Ga0105240_10087951 3300009093 Bacteria 3803
39 Ga0111539_10501991 3300009094 Bacteria 1413
40 Ga0105247_10045525 3300009101 Bacteria 2692
41 Ga0105030_102014 3300009987 Bacteria 1784
42 Ga0171463_1001 3300013249 Bacteria 1406070
43 Ga0157380_10044695 3300014326 Bacteria 3473
44 Ga0157380_10068189 3300014326 Bacteria 2866
45 Ga0157379_10051446 3300014968 Unclassified 3680
46 Ga0207684_10002165 3300025910 Bacteria 20119
47 Ga0207695_10116696 3300025913 Bacteria 2643
48 Ga0207646_10000510 3300025922 Bacteria 51977
49 Ga0207664_10034779 3300025929 Bacteria 3883
50 Ga0207691_10185196 3300025940 Bacteria 1818
51 Ga0207658_10175646 3300025986 Bacteria 1769
52 Ga0207675_100295032 3300026118 Bacteria 1578
53 Ga0207683_10030815 3300026121 Bacteria 4651
54 Ga0268266_10021452 3300028379 Bacteria 5502
55 Ga0268266_10040087 3300028379 Bacteria 3990
56 Ga0268266_10144196 3300028379 Bacteria 2139
57 Ga0268265_10089432 3300028380 Bacteria 2456
58 Ga0307408_100061807 3300031548 Bacteria 2735
59 Ga0316579_10018991 3300031691 Bacteria 3032
60 Ga0316576_10018606 3300031727 Bacteria 4745
61 Ga0307516_10000013 3300031730 Bacteria 217896
62 Ga0307405_10048035 3300031731 Bacteria 2630
63 Ga0307413_10006444 3300031824 Bacteria 5361
64 Ga0307410_10013727 3300031852 Bacteria 4738
65 Ga0307410_10139743 3300031852 Bacteria 1790
66 Ga0307406_10055328 3300031901 Bacteria 2536
67 Ga0307407_10010352 3300031903 Bacteria 4393
68 Ga0307409_100049849 3300031995 Bacteria 3195
69 Ga0307416_100070384 3300032002 Bacteria 2900
70 Ga0307411_10037615 3300032005 Bacteria 3044
71 Ga0316574_0013847 3300035398 Bacteria 4647
72 Ga0316574_0152636 3300035398 Bacteria 1488
73 Ga0316584_0014901 3300036712 Bacteria 5554
74 Ga0395905_0004216 3300037471 Bacteria 15034
75 Ga0436360_0179022 3300039438 Bacteria 9331
76 Ga0451791_1664578 3300041451 Bacteria 2246
77 Ga0451843_1694761 3300041509 Bacteria 2875
78 Ga0439431_0010618 3300041997 Bacteria 2092
79 Ga0450923_007059 3300042125 Bacteria 1885
80 Ga0450908_001235 3300042184 Bacteria 4956
81 Ga0439434_0007320 3300042435 Bacteria 3234
82 Ga0439435_0007691 3300042436 Bacteria 2476
83 Ga0439444_0004925 3300042437 Bacteria 1961
84 Ga0451577_0019718 3300042876 Bacteria 6198
85 Ga0453684_0276184 3300044712 Bacteria 1918
86 Ga0451576_0008625 3300045051 Bacteria 11941
87 Ga0451576_0265748 3300045051 Bacteria 1793
88 Ga0495616_0003141 3300046513 Bacteria 10674
89 Ga0495621_0062182 3300046539 Bacteria 1358
90 Ga0501033_0067243 3300049570 Bacteria 2635
91 Ga0501036_0025449 3300049572 Bacteria 4992
92 Ga0501036_0035082 3300049572 Bacteria 4243
93 Ga0501038_0024136 3300049574 Bacteria 5428
94 Ga0501039_0005580 3300049575 Bacteria 9523
95 Ga0501039_0100920 3300049575 Bacteria 2252
96 Ga0501039_0108771 3300049575 Bacteria 2167
97 Ga0501040_0009575 3300049576 Bacteria 6321
98 Ga0501040_0034159 3300049576 Bacteria 3446
99 Ga0501040_0034190 3300049576 Bacteria 3444
100 Ga0501041_0000924 3300049577 Bacteria 15890
101 Ga0501041_0074610 3300049577 Bacteria 2084
102 Ga0501042_0006586 3300049578 Bacteria 7555
103 Ga0501042_0007997 3300049578 Bacteria 6960
104 Ga0501043_0040359 3300049579 Bacteria 3668
105 Ga0501043_0078330 3300049579 Bacteria 2597
106 Ga0501046_0014498 3300049580 Bacteria 6647
107 Ga0501046_0032904 3300049580 Bacteria 4195
108 Ga0501048_0003143 3300049582 Bacteria 12604
109 Ga0501048_0048756 3300049582 Bacteria 3020
110 Ga0501067_0026252 3300049583 Bacteria 3227
111 Ga0501068_0013445 3300049584 Bacteria 4658
112 Ga0501068_0046486 3300049584 Bacteria 2618
113 Ga0501071_0003186 3300049587 Bacteria 10210
114 Ga0501071_0024840 3300049587 Bacteria 4192
115 Ga0501071_0133998 3300049587 Bacteria 1842
116 Ga0501072_0000760 3300049588 Bacteria 23517
117 Ga0501073_0001889 3300049589 Bacteria 15604
118 Ga0501074_0194615 3300049590 Bacteria 1445
119 Ga0501075_0005941 3300049591 Bacteria 8353
120 Ga0501076_0011454 3300049592 Bacteria 6607
121 Ga0501076_0026270 3300049592 Bacteria 4508
122 Ga0501077_0000633 3300049593 Bacteria 21318
123 Ga0501079_0004205 3300049741 Bacteria 10674
124 Ga0501079_0016802 3300049741 Bacteria 5587
125 Ga0501079_0058436 3300049741 Bacteria 2976
126 Ga0501079_0065418 3300049741 Bacteria 2805
127 Ga0501080_0001216 3300049742 Bacteria 21375
128 Ga0501080_0064184 3300049742 Bacteria 3416
129 Ga0501080_0115813 3300049742 Bacteria 2485
130 Ga0501081_0000582 3300049743 Bacteria 20773
131 Ga0501081_0010804 3300049743 Bacteria 5963
132 Ga0501035_0004664 3300049822 Bacteria 13010
133 Ga0501035_0006194 3300049822 Bacteria 11255
134 Ga0501035_0077509 3300049822 Bacteria 2937
135 Ga0501044_0210689 3300049823 Bacteria 1898
136 nmdc:mga03683_37684_c1 3300050489 Bacteria 1971
137 nmdc:mga03683_6558_c1 3300050489 Bacteria 3991
138 nmdc:mga06z11_68603_c1 3300050494 Bacteria 1869
139 nmdc:mga05p37_232267_c1 3300050507 Bacteria 2221
140 nmdc:mga08y16_196502_c1 3300050511 Bacteria 2091
141 nmdc:mga0n895_79156_c1 3300050512 Bacteria 3273
142 nmdc:mga0a205_34152_c1 3300050515 Bacteria 4880
143 nmdc:mga0sz30_6161_c1 3300050516 Bacteria 4441
144 nmdc:mga0sz30_68251_c1 3300050516 Bacteria 1527
145 Ga0500641_0021214 3300053096 Bacteria 2473
146 Ga0501084_0125398 3300054114 Bacteria 2160
147 Ga0501082_0002077 3300060353 Bacteria 17635
148 Ga0501082_0006311 3300060353 Bacteria 10283
149 Ga0530510_0011951 3300061734 Bacteria 6091
150 Ga0530510_0044069 3300061734 Bacteria 3223
151 Ga0530510_0064055 3300061734 Bacteria 2662

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006042 Ga0075368_10069448 Ga0075368_100694481 366
2 3300049576 Ga0501040_0034190 Ga0501040_0034190_2298_3419 371
3 3300049741 Ga0501079_0016802 Ga0501079_0016802_24_1145 371
4 3300035398 Ga0316574_0152636 Ga0316574_0152636_277_1401 372
5 3300050516 nmdc:mga0sz30_68251_c1 nmdc:mga0sz30_68251_c1_128_1318 373
6 3300031824 Ga0307413_10006444 Ga0307413_100064443 377
7 3300031852 Ga0307410_10013727 Ga0307410_100137273 377
8 3300031903 Ga0307407_10010352 Ga0307407_100103523 377
9 3300031995 Ga0307409_100049849 Ga0307409_1000498492 377
10 3300032005 Ga0307411_10037615 Ga0307411_100376153 377
11 3300031727 Ga0316576_10018606 Ga0316576_100186064 383
12 3300036712 Ga0316584_0014901 Ga0316584_0014901_2508_3788 383
13 3300042876 Ga0451577_0019718 Ga0451577_0019718_3053_4285 386
14 3300044712 Ga0453684_0276184 Ga0453684_0276184_160_1392 386
15 3300005548 Ga0070665_100016791 Ga0070665_1000167914 387
16 3300005985 Ga0081539_10057732 Ga0081539_100577323 387
17 3300005548 Ga0070665_100073505 Ga0070665_1000735053 389
18 3300007788 Ga0099795_10000992 Ga0099795_100009924 389
19 3300026121 Ga0207683_10030815 Ga0207683_100308155 389
20 3300028379 Ga0268266_10144196 Ga0268266_101441962 389
21 3300045051 Ga0451576_0008625 Ga0451576_0008625_5259_6458 389
22 3300005617 Ga0068859_100096972 Ga0068859_1000969724 390
23 3300005843 Ga0068860_100101242 Ga0068860_1001012423 390
24 3300006931 Ga0097620_100096973 Ga0097620_1000969733 390
25 3300006844 Ga0075428_100042068 Ga0075428_1000420682 392
26 3300009094 Ga0111539_10501991 Ga0111539_105019911 392
27 3300050511 nmdc:mga08y16_196502_c1 nmdc:mga08y16_196502_c1_255_1469 392
28 3300006177 Ga0075362_10010376 Ga0075362_100103762 393
29 3300006353 Ga0075370_10012544 Ga0075370_100125442 393
30 3300050489 nmdc:mga03683_37684_c1 nmdc:mga03683_37684_c1_647_1837 393
31 3300050489 nmdc:mga03683_6558_c1 nmdc:mga03683_6558_c1_2567_3757 393
32 3300050494 nmdc:mga06z11_68603_c1 nmdc:mga06z11_68603_c1_463_1653 393
33 3300050516 nmdc:mga0sz30_6161_c1 nmdc:mga0sz30_6161_c1_2190_3380 393
34 3300061734 Ga0530510_0064055 Ga0530510_0064055_1416_2630 395
35 3300031691 Ga0316579_10018991 Ga0316579_100189912 396
36 iso_pu_bacteria 2899259804 2899260457 397
37 3300005548 Ga0070665_100036245 Ga0070665_1000362455 398
38 3300028379 Ga0268266_10021452 Ga0268266_100214525 398
39 3300049578 Ga0501042_0006586 Ga0501042_0006586_4268_5473 399
40 3300049579 Ga0501043_0078330 Ga0501043_0078330_1272_2477 399
41 3300049580 Ga0501046_0032904 Ga0501046_0032904_1936_3141 399
42 3300049587 Ga0501071_0024840 Ga0501071_0024840_1995_3200 399
43 3300049591 Ga0501075_0005941 Ga0501075_0005941_6311_7516 399
44 3300049742 Ga0501080_0064184 Ga0501080_0064184_1253_2458 399
45 3300049743 Ga0501081_0010804 Ga0501081_0010804_1484_2689 399
46 3300049822 Ga0501035_0077509 Ga0501035_0077509_225_1430 399
47 iso_pu_bacteria 2523231067 2523467884 399
48 iso_pu_bacteria 2738543031 2739349337 399
49 3300005354 Ga0070675_100117595 Ga0070675_1001175952 400
50 3300005844 Ga0068862_100079712 Ga0068862_1000797122 400
51 3300006237 Ga0097621_100129944 Ga0097621_1001299442 400
52 3300014326 Ga0157380_10068189 Ga0157380_100681892 400
53 3300025986 Ga0207658_10175646 Ga0207658_101756461 400
54 3300026118 Ga0207675_100295032 Ga0207675_1002950322 400
55 3300041451 Ga0451791_1664578 Ga0451791_1664578_825_2057 400
56 3300041509 Ga0451843_1694761 Ga0451843_1694761_1066_2298 400
57 3300053096 Ga0500641_0021214 Ga0500641_0021214_485_1696 400
58 3300039438 Ga0436360_0179022 Ga0436360_0179022_69_1283 401
59 3300049570 Ga0501033_0067243 Ga0501033_0067243_764_1975 401
60 3300049577 Ga0501041_0000924 Ga0501041_0000924_3951_5162 401
61 3300049578 Ga0501042_0007997 Ga0501042_0007997_1545_2756 401
62 3300049580 Ga0501046_0014498 Ga0501046_0014498_4554_5765 401
63 3300049588 Ga0501072_0000760 Ga0501072_0000760_12750_13961 401
64 3300049592 Ga0501076_0011454 Ga0501076_0011454_3310_4521 401
65 3300049593 Ga0501077_0000633 Ga0501077_0000633_19570_20781 401
66 3300049741 Ga0501079_0004205 Ga0501079_0004205_4211_5422 401
67 3300049743 Ga0501081_0000582 Ga0501081_0000582_18988_20199 401
68 3300060353 Ga0501082_0002077 Ga0501082_0002077_11242_12453 401
69 3300061734 Ga0530510_0011951 Ga0530510_0011951_4299_5510 401
70 iso_pu_bacteria 2838074704 2838075443 401
71 iso_pu_bacteria 2896384573 2896385451 401
72 3300005333 Ga0070677_10002204 Ga0070677_100022047 402
73 3300005347 Ga0070668_100160022 Ga0070668_1001600222 402
74 3300005543 Ga0070672_100164536 Ga0070672_1001645361 402
75 3300005546 Ga0070696_100000081 Ga0070696_10000008121 402
76 3300005937 Ga0081455_10000478 Ga0081455_1000047824 402
77 3300005937 Ga0081455_10011980 Ga0081455_100119805 402
78 3300006852 Ga0075433_10007561 Ga0075433_100075616 402
79 3300006871 Ga0075434_100007969 Ga0075434_1000079694 402
80 3300009093 Ga0105240_10053295 Ga0105240_100532953 402
81 3300009987 Ga0105030_102014 Ga0105030_1020142 402
82 3300014326 Ga0157380_10044695 Ga0157380_100446952 402
83 3300025913 Ga0207695_10116696 Ga0207695_101166963 402
84 3300025940 Ga0207691_10185196 Ga0207691_101851962 402
85 3300028380 Ga0268265_10089432 Ga0268265_100894321 402
86 3300031730 Ga0307516_10000013 Ga0307516_10000013113 402
87 3300042125 Ga0450923_007059 Ga0450923_007059_199_1413 402
88 3300042184 Ga0450908_001235 Ga0450908_001235_1974_3188 402
89 3300045051 Ga0451576_0265748 Ga0451576_0265748_202_1416 402
90 3300046513 Ga0495616_0003141 Ga0495616_0003141_3739_5037 402
91 3300046539 Ga0495621_0062182 Ga0495621_0062182_22_1260 402
92 3300049572 Ga0501036_0025449 Ga0501036_0025449_2126_3340 402
93 3300049572 Ga0501036_0035082 Ga0501036_0035082_2854_4068 402
94 3300049574 Ga0501038_0024136 Ga0501038_0024136_3460_4674 402
95 3300049575 Ga0501039_0005580 Ga0501039_0005580_1857_3071 402
96 3300049575 Ga0501039_0100920 Ga0501039_0100920_901_2115 402
97 3300049576 Ga0501040_0009575 Ga0501040_0009575_815_2029 402
98 3300049576 Ga0501040_0034159 Ga0501040_0034159_1577_2791 402
99 3300049577 Ga0501041_0074610 Ga0501041_0074610_386_1600 402
100 3300049579 Ga0501043_0040359 Ga0501043_0040359_1870_3084 402
101 3300049582 Ga0501048_0003143 Ga0501048_0003143_391_1605 402
102 3300049582 Ga0501048_0048756 Ga0501048_0048756_433_1647 402
103 3300049583 Ga0501067_0026252 Ga0501067_0026252_1504_2718 402
104 3300049584 Ga0501068_0013445 Ga0501068_0013445_1484_2698 402
105 3300049584 Ga0501068_0046486 Ga0501068_0046486_682_1896 402
106 3300049587 Ga0501071_0003186 Ga0501071_0003186_4707_5921 402
107 3300049589 Ga0501073_0001889 Ga0501073_0001889_7723_8937 402
108 3300049590 Ga0501074_0194615 Ga0501074_0194615_157_1371 402
109 3300049741 Ga0501079_0058436 Ga0501079_0058436_510_1724 402
110 3300049741 Ga0501079_0065418 Ga0501079_0065418_634_1848 402
111 3300049742 Ga0501080_0001216 Ga0501080_0001216_1729_2943 402
112 3300049822 Ga0501035_0004664 Ga0501035_0004664_11531_12745 402
113 3300049822 Ga0501035_0006194 Ga0501035_0006194_6109_7323 402
114 3300049823 Ga0501044_0210689 Ga0501044_0210689_632_1846 402
115 3300050507 nmdc:mga05p37_232267_c1 nmdc:mga05p37_232267_c1_523_1737 402
116 3300050512 nmdc:mga0n895_79156_c1 nmdc:mga0n895_79156_c1_1380_2600 402
117 3300050515 nmdc:mga0a205_34152_c1 nmdc:mga0a205_34152_c1_1155_2375 402
118 3300054114 Ga0501084_0125398 Ga0501084_0125398_574_1788 402
119 3300060353 Ga0501082_0006311 Ga0501082_0006311_1420_2634 402
120 3300061734 Ga0530510_0044069 Ga0530510_0044069_270_1484 402
121 iso_pu_bacteria 2506783011 2506866577 402
122 iso_pu_bacteria 2773857933 2774903133 402
123 3300003320 rootH2_10242261 rootH2_102422613 403
124 3300005337 Ga0070682_100128005 Ga0070682_1001280052 403
125 3300005435 Ga0070714_100024924 Ga0070714_1000249242 403
126 3300005467 Ga0070706_100002792 Ga0070706_10000279211 403
127 3300005468 Ga0070707_100001310 Ga0070707_10000131013 403
128 3300005471 Ga0070698_100001705 Ga0070698_10000170511 403
129 3300025910 Ga0207684_10002165 Ga0207684_100021659 403
130 3300025922 Ga0207646_10000510 Ga0207646_1000051021 403
131 3300025929 Ga0207664_10034779 Ga0207664_100347793 403
132 3300031731 Ga0307405_10048035 Ga0307405_100480352 403
133 3300031852 Ga0307410_10139743 Ga0307410_101397432 403
134 3300031901 Ga0307406_10055328 Ga0307406_100553283 403
135 3300032002 Ga0307416_100070384 Ga0307416_1000703843 403
136 3300035398 Ga0316574_0013847 Ga0316574_0013847_1337_2554 403
137 3300041997 Ga0439431_0010618 Ga0439431_0010618_412_1629 403
138 3300042435 Ga0439434_0007320 Ga0439434_0007320_1068_2405 403
139 3300042436 Ga0439435_0007691 Ga0439435_0007691_689_2026 403
140 3300042437 Ga0439444_0004925 Ga0439444_0004925_344_1561 403
141 3300049575 Ga0501039_0108771 Ga0501039_0108771_708_1925 403
142 3300049587 Ga0501071_0133998 Ga0501071_0133998_135_1352 403
143 3300049592 Ga0501076_0026270 Ga0501076_0026270_2638_3855 403
144 3300049742 Ga0501080_0115813 Ga0501080_0115813_1189_2406 403
145 iso_pu_bacteria 2811994879 2812360974 403
146 iso_pu_bacteria 2844163670 2844170668 403
147 iso_pu_bacteria 2920822456 2920823457 403
148 3300003203 JGI25406J46586_10019109 JGI25406J46586_100191092 405
149 3300005548 Ga0070665_100035419 Ga0070665_1000354193 405
150 3300005985 Ga0081539_10000055 Ga0081539_10000055148 405
151 3300009093 Ga0105240_10087951 Ga0105240_100879513 405
152 3300009101 Ga0105247_10045525 Ga0105247_100455252 405
153 3300014968 Ga0157379_10051446 Ga0157379_100514462 405
154 3300028379 Ga0268266_10040087 Ga0268266_100400873 405
155 3300037471 Ga0395905_0004216 Ga0395905_0004216_5832_7106 406
156 iso_pu_bacteria 2791355253 2793281981 406
157 3300002987 JGI25159J45721_1000016 JGI25159J45721_1000016133 407
158 3300005981 Ga0081538_10015254 Ga0081538_100152546 407
159 3300006844 Ga0075428_100099736 Ga0075428_1000997363 407
160 3300006844 Ga0075428_100380746 Ga0075428_1003807462 407
161 3300013249 Ga0171463_1001 Ga0171463_1001615 407
162 3300031548 Ga0307408_100061807 Ga0307408_1000618071 407
163 iso_pu_bacteria 2643221618 2644103103 407
164 iso_pu_bacteria 2643221626 2644151968 407
165 iso_pu_bacteria 2643221655 2644306030 407
166 iso_pu_bacteria 2643221659 2644330338 407
167 iso_pu_bacteria 2643221698 2644542915 407
168 iso_pu_bacteria 2643221712 2644619019 407
169 iso_pu_bacteria 2941499720 2941500635 407

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14759

Reductase_C

Reductase C-terminal

360

444

0.99

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

186

266

0.95

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

43

341

0.94

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

189

254

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
1q1r-assembly1.cif.gz_A crystal structure of putidaredoxin reductase from pseudomonas putida 0.9658 2 405
3int-assembly3.cif.gz_B structure of udp-galactopyranose mutase bound to udp-galactose (reduced) 0.9576 146 180
2bi8-assembly1.cif.gz_A udp-galactopyranose mutase from klebsiella pneumoniae with reduced fad 0.9573 146 180
1q1r-assembly1.cif.gz_A crystal structure of putidaredoxin reductase from pseudomonas putida 0.9566 2 405
3fg2-assembly1.cif.gz_P crystal structure of ferredoxin reductase for the cyp199a2 system from rhodopseudomonas palustris 0.9565 4 402
ID Description Score Start End Superfamily
5jclB02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9696 120 240 3.50.50.60
af_A0A1D6LF14_1_79_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9676 159 234 3.50.50.60
4emjA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.967 120 240 3.50.50.60
4emjA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9593 120 240 3.50.50.60
3fg2P01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9556 4 319 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A3M1M1E5-F1-model_v4 Pyridine nucleotide-disulfide oxidoreductase 0.9867 4 359 GO:0005737
GO:0016651
AF-A0A6B1F330-F1-model_v4 Oxidoreductase 0.9866 55 404 GO:0005737
GO:0016651
AF-A0A833LDT7-F1-model_v4 Oxidoreductase 0.9859 127 404 GO:0005737
GO:0016651
AF-A0A7Y2XGW4-F1-model_v4 FAD-dependent oxidoreductase 0.9829 4 302 GO:0005737
GO:0016651
AF-A0A2E7V833-F1-model_v4 Pyridine nucleotide-disulfide oxidoreductase 0.9803 1 403 GO:0005737
GO:0016651

Feature Viewer

pLDDT pTM Quality
93.84 0.9 High
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Predicted Structure (AlphaFold2)

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