F254928

General Info

Members Datasets Scaffolds Average Seq Length
169 106 154 491

Family's Representative Sequence

Representative Sequence 3300026116|Ga0207674_10011034|Ga0207674_1001103411
Length 520
Sequence MIIMTTVALRSSEGRWVMVTTILASAMAFIDGTALNVVLPALQHNLNASAADLFWVLNAYLLMLASLILIGGTLGDRLGRKKIFMAGIFVFILGSAACGFAGTATLLIIFRMIQGIGGALMIPGSLSLITSSINENERGKAIGTWSAITTLVTMGGPILGGALADAGLWRYIFFINVPIGVAALVFLALKVRESRETEGDQRLDYPGAVLTAAGLALLTFGFLRMPLLGFRNPEVYGTIAGGVILLIVFIVVENKSRHPMLPVHLFKNLTFTGTNLLTFFLYAGLGAGMLFLSLDMVQVQGYTQLQSGLTFLPFTVLMITIARFAGSLADKYGPRLFLVVGPCVAGGGLLLLSFVKQTQGAADYWTTFFPGLVGLGLGMSITVAPLTAAVMGSVSDHLSGTASGVNNAITRIAGVFANAIFGALAVLFFSGAVQREVSKLPLNSSQQEAVIAQTVNLGNASVPAGIDSAHQDAIRKVYKDGFIAAYGNIMRLSAGLGFMGGLMGFLFIRKRPAAAPPAGQ

Samples

Sample ID Description Type Environment
1 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
2 2738541283 Pedobacter sp. OK701 Isolate Unclassified
3 2738543023 Pedobacter sp. OK628 Isolate Unclassified
4 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
5 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
6 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
7 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
8 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
9 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
10 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
11 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
12 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
13 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
14 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
15 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
16 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
17 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
18 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
19 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
20 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
21 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
22 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
23 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
24 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
25 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
26 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
27 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
28 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
29 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
30 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
31 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
32 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
33 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
34 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
37 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
38 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
58 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
59 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
60 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
61 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
62 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
64 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
65 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
66 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
67 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
68 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
85 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
86 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
87 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
91 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
92 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
93 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
94 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
95 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
96 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
97 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
98 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
101 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
106 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.12
Metatranscriptomes 0
Isolates 8.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.06
Nodule 0
Rhizoplane 0.59
Rhizosphere 75.15
Stem 0
Stem Tuber 0
Unclassified 14.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24737J22298_10002936 3300001990 Bacteria 6041
2 JGI24737J22298_10005212 3300001990 Bacteria 4498
3 JGI24735J21928_10000001 3300002067 Bacteria 650042
4 JGI25162J39368_1000005 3300002737 Bacteria 435925
5 JGI25162J39368_1000020 3300002737 Bacteria 254723
6 JGI25154J39366_1000065 3300002738 Bacteria 104126
7 JGI25153J46596_10002789 3300003215 Bacteria 9929
8 rootH1_10015646 3300003316 Bacteria 7051
9 rootH1_10071229 3300003316 Bacteria 10970
10 rootH2_10001101 3300003320 Bacteria 45863
11 rootH2_10009713 3300003320 Bacteria 16901
12 rootL2_10009255 3300003322 Bacteria 3235
13 rootL2_10085352 3300003322 Bacteria 1783
14 rootH1_10123051 3300003323 Bacteria 1919
15 rootH1_10134237 3300003323 Bacteria 5934
16 JGI25160J50197_1008805 3300003354 Bacteria 3808
17 Ga0055531_10000122 3300003794 Bacteria 86804
18 Ga0070676_10001255 3300005328 Bacteria 12786
19 Ga0070683_100063783 3300005329 Bacteria 3428
20 Ga0068868_100020295 3300005338 Bacteria 4989
21 Ga0070673_100006176 3300005364 Bacteria 7767
22 Ga0070659_100017587 3300005366 Bacteria 5385
23 Ga0070659_100092832 3300005366 Unclassified 2421
24 Ga0070663_100009075 3300005455 Bacteria 6145
25 Ga0070678_100002069 3300005456 Bacteria 10884
26 Ga0070662_100000102 3300005457 Bacteria 47055
27 Ga0068853_100002033 3300005539 Bacteria 14977
28 Ga0070665_100000003 3300005548 Bacteria 811857
29 Ga0068855_100000122 3300005563 Bacteria 97622
30 Ga0068855_100011296 3300005563 Bacteria 10782
31 Ga0068855_100288731 3300005563 Unclassified 1819
32 Ga0068856_100059578 3300005614 Bacteria 3771
33 Ga0068856_100069480 3300005614 Bacteria 3483
34 Ga0068852_100000590 3300005616 Bacteria 23897
35 Ga0068864_100099069 3300005618 Bacteria 2582
36 Ga0097621_100000020 3300006237 Bacteria 86226
37 Ga0068871_100008512 3300006358 Bacteria 7376
38 Ga0068865_100000050 3300006881 Bacteria 65632
39 Ga0105240_10000010 3300009093 Bacteria 537830
40 Ga0105240_10002186 3300009093 Bacteria 31932
41 Ga0105240_10004181 3300009093 Bacteria 22114
42 Ga0105240_10042692 3300009093 Bacteria 5777
43 Ga0105240_10336211 3300009093 Bacteria 1717
44 Ga0105240_10350842 3300009093 Unclassified 1674
45 Ga0105241_10001034 3300009174 Bacteria 21202
46 Ga0105241_10006121 3300009174 Bacteria 8865
47 Ga0105241_10031000 3300009174 Bacteria 3999
48 Ga0105242_10007974 3300009176 Bacteria 8158
49 Ga0105237_10000243 3300009545 Bacteria 77722
50 Ga0105237_10004033 3300009545 Bacteria 17156
51 Ga0105237_10007999 3300009545 Bacteria 11509
52 Ga0105237_10012179 3300009545 Bacteria 9069
53 Ga0105237_10012604 3300009545 Bacteria 8904
54 Ga0105237_10017284 3300009545 Bacteria 7478
55 Ga0105238_10007693 3300009551 Bacteria 10775
56 Ga0105239_10000013 3300010375 Bacteria 327371
57 Ga0105239_10000178 3300010375 Bacteria 92196
58 Ga0105239_10000530 3300010375 Bacteria 55219
59 Ga0105239_10002410 3300010375 Bacteria 23819
60 Ga0105239_10006616 3300010375 Bacteria 13418
61 Ga0105239_10052737 3300010375 Bacteria 4460
62 Ga0105239_10217220 3300010375 Unclassified 2144
63 Ga0157373_10001048 3300013100 Bacteria 21293
64 Ga0157371_10000363 3300013102 Bacteria 57446
65 Ga0157371_10000760 3300013102 Bacteria 37271
66 Ga0157370_10044728 3300013104 Bacteria 4252
67 Ga0157369_10001103 3300013105 Bacteria 33807
68 Ga0157369_10096656 3300013105 Bacteria 3151
69 Ga0157369_10222204 3300013105 Unclassified 1977
70 Ga0157374_10000306 3300013296 Bacteria 45513
71 Ga0157374_10001366 3300013296 Bacteria 20757
72 Ga0157378_10007727 3300013297 Bacteria 9384
73 Ga0163162_10000117 3300013306 Bacteria 70736
74 Ga0163162_10050325 3300013306 Bacteria 4178
75 Ga0157372_10000001 3300013307 Bacteria 791349
76 Ga0157372_10000851 3300013307 Bacteria 33164
77 Ga0157372_10046443 3300013307 Bacteria 4821
78 Ga0157372_10113081 3300013307 Bacteria 3111
79 Ga0157375_10094998 3300013308 Unclassified 3051
80 Ga0182008_10001586 3300014497 Bacteria 15141
81 Ga0182008_10012376 3300014497 Unclassified 4504
82 Ga0163161_10000316 3300017792 Bacteria 41679
83 Ga0163161_10000870 3300017792 Bacteria 23533
84 Ga0163161_10026541 3300017792 Bacteria 4102
85 Ga0213872_10015122 3300021361 Bacteria 3589
86 Ga0209436_101263 3300025208 Bacteria 9078
87 Ga0207427_100090 3300025231 Bacteria 133759
88 Ga0209437_100034 3300025233 Bacteria 494007
89 Ga0209437_100043 3300025233 Bacteria 440454
90 Ga0209437_100085 3300025233 Bacteria 254790
91 Ga0209646_1000002 3300025246 Bacteria 1425781
92 Ga0209026_1000357 3300025250 Bacteria 43020
93 Ga0209026_1001891 3300025250 Bacteria 8522
94 Ga0209233_1000038 3300025261 Bacteria 548972
95 Ga0207426_1000234 3300025302 Bacteria 126926
96 Ga0207426_1001379 3300025302 Bacteria 20571
97 Ga0209257_1000008 3300025304 Bacteria 1294570
98 Ga0207647_10000332 3300025904 Bacteria 38845
99 Ga0207645_10002311 3300025907 Bacteria 15065
100 Ga0207695_10000019 3300025913 Bacteria 732137
101 Ga0207695_10000027 3300025913 Bacteria 612456
102 Ga0207695_10009450 3300025913 Bacteria 12060
103 Ga0207695_10009610 3300025913 Bacteria 11940
104 Ga0207695_10232431 3300025913 Bacteria 1747
105 Ga0207671_10002720 3300025914 Bacteria 18525
106 Ga0207671_10003546 3300025914 Bacteria 15462
107 Ga0207671_10004062 3300025914 Bacteria 14188
108 Ga0207671_10011770 3300025914 Bacteria 7085
109 Ga0207671_10013830 3300025914 Bacteria 6409
110 Ga0207671_10031111 3300025914 Bacteria 3979
111 Ga0207706_10000315 3300025933 Bacteria 52200
112 Ga0207686_10023721 3300025934 Bacteria 3545
113 Ga0207704_10000078 3300025938 Bacteria 59491
114 Ga0207679_10155939 3300025945 Unclassified 1864
115 Ga0207667_10000020 3300025949 Bacteria 374770
116 Ga0207667_10036381 3300025949 Bacteria 5277
117 Ga0207651_10046493 3300025960 Bacteria 2919
118 Ga0207702_10014232 3300026078 Bacteria 6606
119 Ga0207702_10019308 3300026078 Bacteria 5639
120 Ga0207702_10229992 3300026078 Bacteria 1732
121 Ga0207674_10011034 3300026116 Bacteria 10161
122 Ga0207683_10008168 3300026121 Bacteria 8955
123 Ga0207698_10002706 3300026142 Bacteria 10547
124 Ga0268266_10000052 3300028379 Bacteria 296230
125 Ga0307515_10000174 3300028794 Bacteria 157501
126 Ga0395899_0000524 3300037312 Bacteria 42071
127 Ga0395899_0092787 3300037312 Bacteria 2186
128 Ga0395900_0000128 3300037418 Bacteria 127446
129 Ga0395900_0005336 3300037418 Bacteria 13469
130 Ga0395898_0014401 3300037466 Bacteria 8127
131 Ga0395905_0004563 3300037471 Bacteria 14334
132 Ga0395905_0009446 3300037471 Bacteria 9528
133 Ga0395901_0011368 3300038443 Bacteria 9022
134 Ga0395901_0028025 3300038443 Bacteria 5792
135 Ga0436361_1037443 3300039447 Bacteria 14174
136 Ga0439431_0011223 3300041997 Bacteria 2044
137 Ga0466966_0015560 3300044684 Bacteria 5028
138 Ga0495650_0000057 3300046471 Bacteria 303569
139 Ga0495606_0000012 3300046507 Bacteria 294304
140 Ga0495625_0000003 3300046660 Bacteria 686847
141 Ga0495661_0004379 3300046665 Bacteria 10218
142 Ga0495649_0000002 3300046694 Bacteria 1093458
143 Ga0495687_000527 3300047443 Bacteria 45682
144 Ga0495686_0001877 3300047472 Bacteria 21010
145 Ga0495686_0003061 3300047472 Bacteria 14821
146 Ga0495686_0056312 3300047472 Bacteria 2457
147 Ga0496122_0002455 3300048925 Bacteria 26237
148 Ga0496123_0005573 3300048926 Bacteria 12596
149 Ga0496126_0005164 3300048929 Bacteria 15097
150 Ga0495678_007947 3300049459 Bacteria 5433
151 Ga0501047_0020220 3300049581 Bacteria 6393
152 Ga0500622_0000038 3300053156 Bacteria 171777
153 Ga0500622_0000072 3300053156 Bacteria 112062
154 Ga0500622_0001011 3300053156 Bacteria 23680

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048929 Ga0496126_0005164 Ga0496126_0005164_11708_13132 428
2 3300053156 Ga0500622_0000072 Ga0500622_0000072_92819_94369 436
3 3300003323 rootH1_10134237 rootH1_101342374 446
4 3300047472 Ga0495686_0001877 Ga0495686_0001877_268_1782 447
5 3300005614 Ga0068856_100059578 Ga0068856_1000595784 455
6 3300005548 Ga0070665_100000003 Ga0070665_100000003588 459
7 3300028379 Ga0268266_10000052 Ga0268266_10000052180 459
8 3300003323 rootH1_10123051 rootH1_101230511 461
9 3300013306 Ga0163162_10000117 Ga0163162_1000011767 461
10 3300021361 Ga0213872_10015122 Ga0213872_100151222 461
11 3300039447 Ga0436361_1037443 Ga0436361_1037443_2117_3658 461
12 3300003320 rootH2_10001101 rootH2_100011014 465
13 3300009093 Ga0105240_10002186 Ga0105240_1000218621 469
14 3300025913 Ga0207695_10000027 Ga0207695_1000002791 469
15 3300003316 rootH1_10015646 rootH1_100156466 470
16 3300047472 Ga0495686_0056312 Ga0495686_0056312_828_2306 471
17 3300001990 JGI24737J22298_10005212 JGI24737J22298_100052122 472
18 3300005366 Ga0070659_100092832 Ga0070659_1000928322 472
19 3300005457 Ga0070662_100000102 Ga0070662_10000010229 472
20 3300025904 Ga0207647_10000332 Ga0207647_1000033219 472
21 3300025933 Ga0207706_10000315 Ga0207706_1000031527 472
22 3300017792 Ga0163161_10000316 Ga0163161_1000031612 473
23 3300009093 Ga0105240_10350842 Ga0105240_103508421 475
24 3300002737 JGI25162J39368_1000005 JGI25162J39368_1000005134 478
25 3300003320 rootH2_10009713 rootH2_100097134 478
26 3300025233 Ga0209437_100043 Ga0209437_100043264 478
27 3300003794 Ga0055531_10000122 Ga0055531_1000012211 479
28 3300009545 Ga0105237_10012604 Ga0105237_100126044 479
29 3300025304 Ga0209257_1000008 Ga0209257_1000008430 479
30 3300025914 Ga0207671_10002720 Ga0207671_100027202 479
31 3300047472 Ga0495686_0003061 Ga0495686_0003061_7615_9162 479
32 3300005455 Ga0070663_100009075 Ga0070663_1000090754 480
33 3300013102 Ga0157371_10000760 Ga0157371_100007609 480
34 3300013105 Ga0157369_10001103 Ga0157369_100011032 480
35 3300013306 Ga0163162_10050325 Ga0163162_100503253 480
36 3300013307 Ga0157372_10000001 Ga0157372_10000001464 480
37 3300017792 Ga0163161_10026541 Ga0163161_100265412 480
38 3300025250 Ga0209026_1000357 Ga0209026_10003572 480
39 3300028794 Ga0307515_10000174 Ga0307515_1000017460 480
40 3300037312 Ga0395899_0000524 Ga0395899_0000524_18814_20325 480
41 3300037466 Ga0395898_0014401 Ga0395898_0014401_454_1995 480
42 3300037471 Ga0395905_0009446 Ga0395905_0009446_573_2114 480
43 3300038443 Ga0395901_0028025 Ga0395901_0028025_2283_3824 480
44 3300002738 JGI25154J39366_1000065 JGI25154J39366_100006518 481
45 3300005539 Ga0068853_100002033 Ga0068853_10000203310 481
46 3300005563 Ga0068855_100000122 Ga0068855_10000012254 481
47 3300009545 Ga0105237_10000243 Ga0105237_1000024340 481
48 3300009545 Ga0105237_10017284 Ga0105237_100172842 481
49 3300010375 Ga0105239_10052737 Ga0105239_100527372 481
50 3300013105 Ga0157369_10096656 Ga0157369_100966563 481
51 3300025246 Ga0209646_1000002 Ga0209646_10000021143 481
52 3300025250 Ga0209026_1001891 Ga0209026_100189110 481
53 3300025914 Ga0207671_10003546 Ga0207671_1000354615 481
54 3300025914 Ga0207671_10011770 Ga0207671_100117703 481
55 3300025949 Ga0207667_10000020 Ga0207667_10000020266 481
56 3300003215 JGI25153J46596_10002789 JGI25153J46596_100027894 482
57 3300003354 JGI25160J50197_1008805 JGI25160J50197_10088055 482
58 3300009093 Ga0105240_10000010 Ga0105240_10000010123 482
59 3300009093 Ga0105240_10004181 Ga0105240_100041816 482
60 3300009174 Ga0105241_10031000 Ga0105241_100310003 482
61 3300010375 Ga0105239_10006616 Ga0105239_1000661614 482
62 3300025302 Ga0207426_1001379 Ga0207426_10013796 482
63 3300025913 Ga0207695_10000019 Ga0207695_10000019329 482
64 3300025913 Ga0207695_10009610 Ga0207695_100096102 482
65 3300005328 Ga0070676_10001255 Ga0070676_100012555 484
66 3300005364 Ga0070673_100006176 Ga0070673_1000061764 484
67 3300005456 Ga0070678_100002069 Ga0070678_1000020697 484
68 3300005616 Ga0068852_100000590 Ga0068852_1000005904 484
69 3300006237 Ga0097621_100000020 Ga0097621_10000002053 484
70 3300006358 Ga0068871_100008512 Ga0068871_1000085125 484
71 3300006881 Ga0068865_100000050 Ga0068865_10000005053 484
72 3300009174 Ga0105241_10006121 Ga0105241_100061212 484
73 3300009176 Ga0105242_10007974 Ga0105242_100079745 484
74 3300009545 Ga0105237_10007999 Ga0105237_100079996 484
75 3300009551 Ga0105238_10007693 Ga0105238_100076931 484
76 3300013296 Ga0157374_10001366 Ga0157374_100013666 484
77 3300013297 Ga0157378_10007727 Ga0157378_100077273 484
78 3300017792 Ga0163161_10000870 Ga0163161_1000087010 484
79 3300025907 Ga0207645_10002311 Ga0207645_100023116 484
80 3300025914 Ga0207671_10031111 Ga0207671_100311112 484
81 3300025934 Ga0207686_10023721 Ga0207686_100237213 484
82 3300025938 Ga0207704_10000078 Ga0207704_100000789 484
83 3300025960 Ga0207651_10046493 Ga0207651_100464932 484
84 3300026121 Ga0207683_10008168 Ga0207683_100081682 484
85 3300026142 Ga0207698_10002706 Ga0207698_100027064 484
86 3300003322 rootL2_10009255 rootL2_100092551 485
87 3300005338 Ga0068868_100020295 Ga0068868_1000202953 485
88 3300005563 Ga0068855_100288731 Ga0068855_1002887312 485
89 3300010375 Ga0105239_10217220 Ga0105239_102172201 485
90 3300013308 Ga0157375_10094998 Ga0157375_100949983 485
91 3300037418 Ga0395900_0000128 Ga0395900_0000128_64033_65574 485
92 3300041997 Ga0439431_0011223 Ga0439431_0011223_265_1809 485
93 3300047443 Ga0495687_000527 Ga0495687_000527_28407_29948 485
94 3300049459 Ga0495678_007947 Ga0495678_007947_2537_4087 485
95 3300009174 Ga0105241_10001034 Ga0105241_1000103416 486
96 3300013296 Ga0157374_10000306 Ga0157374_1000030617 486
97 3300013307 Ga0157372_10046443 Ga0157372_100464432 486
98 3300013307 Ga0157372_10113081 Ga0157372_101130812 486
99 3300046471 Ga0495650_0000057 Ga0495650_0000057_39676_41217 486
100 3300046507 Ga0495606_0000012 Ga0495606_0000012_8457_9998 486
101 3300046660 Ga0495625_0000003 Ga0495625_0000003_307764_309305 486
102 3300046665 Ga0495661_0004379 Ga0495661_0004379_1300_2841 486
103 3300046694 Ga0495649_0000002 Ga0495649_0000002_697694_699235 486
104 3300049581 Ga0501047_0020220 Ga0501047_0020220_4300_5844 486
105 3300009545 Ga0105237_10012179 Ga0105237_100121795 487
106 3300013104 Ga0157370_10044728 Ga0157370_100447281 487
107 3300014497 Ga0182008_10001586 Ga0182008_1000158616 487
108 3300025914 Ga0207671_10013830 Ga0207671_100138302 487
109 3300048925 Ga0496122_0002455 Ga0496122_0002455_21312_22844 487
110 3300048926 Ga0496123_0005573 Ga0496123_0005573_2978_4510 487
111 iso_pu_bacteria 2738541283 2738756928 487
112 iso_pu_bacteria 2818991460 2819681765 487
113 3300010375 Ga0105239_10000530 Ga0105239_1000053019 488
114 3300014497 Ga0182008_10012376 Ga0182008_100123766 488
115 3300037312 Ga0395899_0092787 Ga0395899_0092787_626_2149 488
116 3300037418 Ga0395900_0005336 Ga0395900_0005336_1372_2895 488
117 3300037471 Ga0395905_0004563 Ga0395905_0004563_3366_4889 488
118 3300038443 Ga0395901_0011368 Ga0395901_0011368_3842_5365 488
119 iso_pu_bacteria 2884791551 2884791655 488
120 3300002737 JGI25162J39368_1000020 JGI25162J39368_100002081 489
121 3300003322 rootL2_10085352 rootL2_100853521 489
122 3300005366 Ga0070659_100017587 Ga0070659_1000175874 489
123 3300005563 Ga0068855_100011296 Ga0068855_1000112968 489
124 3300010375 Ga0105239_10000178 Ga0105239_1000017853 489
125 3300013100 Ga0157373_10001048 Ga0157373_100010489 489
126 3300013102 Ga0157371_10000363 Ga0157371_100003632 489
127 3300013307 Ga0157372_10000851 Ga0157372_100008514 489
128 3300025233 Ga0209437_100085 Ga0209437_100085130 489
129 3300025949 Ga0207667_10036381 Ga0207667_100363812 489
130 3300003316 rootH1_10071229 rootH1_100712299 490
131 3300053156 Ga0500622_0001011 Ga0500622_0001011_22021_23550 490
132 iso_pu_bacteria 2599185184 2599477347 490
133 iso_pu_bacteria 2738543023 2739304039 490
134 iso_pu_bacteria 2852623160 2852623904 490
135 iso_pu_bacteria 2883068021 2883068464 490
136 iso_pu_bacteria 2884933994 2884937192 490
137 iso_pu_bacteria 2928078545 2928079263 490
138 iso_pu_bacteria 2928147474 2928148364 490
139 iso_pu_bacteria 2929177148 2929180474 490
140 iso_pu_bacteria 2932082852 2932084153 490
141 iso_pu_bacteria 2945977869 2945982857 490
142 iso_pu_bacteria 2946013367 2946017750 490
143 iso_pu_bacteria 8003151029 8003153522 490
144 3300005614 Ga0068856_100069480 Ga0068856_1000694802 491
145 3300026078 Ga0207702_10014232 Ga0207702_100142324 491
146 3300026078 Ga0207702_10229992 Ga0207702_102299921 491
147 3300009093 Ga0105240_10042692 Ga0105240_100426922 493
148 3300010375 Ga0105239_10002410 Ga0105239_1000241017 493
149 3300025208 Ga0209436_101263 Ga0209436_1012636 493
150 3300025302 Ga0207426_1000234 Ga0207426_1000234106 493
151 3300025913 Ga0207695_10009450 Ga0207695_100094504 493
152 3300001990 JGI24737J22298_10002936 JGI24737J22298_100029363 494
153 3300002067 JGI24735J21928_10000001 JGI24735J21928_10000001270 494
154 3300005329 Ga0070683_100063783 Ga0070683_1000637832 494
155 3300005618 Ga0068864_100099069 Ga0068864_1000990692 494
156 3300009093 Ga0105240_10336211 Ga0105240_103362112 494
157 3300009545 Ga0105237_10004033 Ga0105237_100040335 494
158 3300010375 Ga0105239_10000013 Ga0105239_10000013118 494
159 3300013105 Ga0157369_10222204 Ga0157369_102222041 494
160 3300025231 Ga0207427_100090 Ga0207427_100090130 494
161 3300025233 Ga0209437_100034 Ga0209437_100034339 494
162 3300025261 Ga0209233_1000038 Ga0209233_1000038339 494
163 3300025913 Ga0207695_10232431 Ga0207695_102324312 494
164 3300025914 Ga0207671_10004062 Ga0207671_100040623 494
165 3300025945 Ga0207679_10155939 Ga0207679_101559391 494
166 3300026078 Ga0207702_10019308 Ga0207702_100193086 494
167 3300026116 Ga0207674_10011034 Ga0207674_1001103411 494
168 3300044684 Ga0466966_0015560 Ga0466966_0015560_1753_3306 494
169 3300053156 Ga0500622_0000038 Ga0500622_0000038_87608_89158 494

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

21

418

0.88

PF00083

Sugar_tr

Sugar (and other) transporter

17

196

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.8467 1 494
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.8451 1 494
8pnl-assembly1.cif.gz_A outward-open conformation of a major facilitator superfamily (mfs) transporter mhas2168, a homologue of rv1410 from m. tuberculosis, in complex with an alpaca nanobody 0.8337 12 487
8pnl-assembly2.cif.gz_C outward-open conformation of a major facilitator superfamily (mfs) transporter mhas2168, a homologue of rv1410 from m. tuberculosis, in complex with an alpaca nanobody 0.8221 12 487
8pnl-assembly1.cif.gz_A outward-open conformation of a major facilitator superfamily (mfs) transporter mhas2168, a homologue of rv1410 from m. tuberculosis, in complex with an alpaca nanobody 0.8205 12 487
ID Description Score Start End Superfamily
af_P9WG87_21_208_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9578 17 202 1.20.1250.20
af_Q04301_34_211_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9476 12 188 1.20.1250.20
af_P76269_18_258_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9453 16 256 1.20.1250.20
af_A0A1D8PEJ7_80_330_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9381 17 258 1.20.1250.20
af_P76269_18_258_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9378 16 256 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A2K2TJ46-F1-model_v4 MFS transporter 0.9539 12 151 GO:0005886
GO:0022857
AF-A0A0F4Z2X5-F1-model_v4 Bcmfs1, multidrug efflux transporter 0.9411 12 262 GO:0005886
GO:0022857
AF-A0A537NMT5-F1-model_v4 MFS transporter 0.9323 1 162 GO:0005886
GO:0022857
AF-A0A3D1QCW4-F1-model_v4 MFS transporter 0.9317 12 231 GO:0005886
GO:0022857
AF-A0A2W6DG54-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9306 12 186 GO:0005886
GO:0022857

Feature Viewer

pLDDT pTM Quality
86.36 0.85 High
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Predicted Structure (AlphaFold2)

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