F253156

General Info

Members Datasets Scaffolds Average Seq Length
168 125 139 731

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0000584|Ga0451577_0000584_42929_45247
Length 772
Sequence MNPHGVKFTNQDRTLEASFFFCKRLSQKFLKFEPNHFPVSKPILLITPPFTQLNTPYPATAYIKGYLNTIGKKAFQSDLGIRVILRIFSKEGLTKVFEAIERRGLKHLSANCQRIVKLQRDYLHTIDPVIRFLQFDNPTLAYTICEGDFLPQASRFAQLDDLDWAFGTMGIQDKARHFATLYLEDIGDLISEALDPHFGFSRYAERLGRSATSFDPLHEALEGPESFTDQFLLEDLGQLIQETDPYLICVSVPFPGNLYGALRCGKYIKTHFPHIKVAMGGGYPNTELRSLKEPRVFKYLDFITLDDGERPLTCLLEHLDGKREIAELKRTFLLMDGKVRYCNGAKHMDIPFSQTGTPDYSGLPLNKYLSVIEIANPMHRLWSDGRWNKLTMAHGCYWKKCSFCDISLDYIKNYEPVSAQILCDRIEELIAQTGETGFHFVDEAAPPALMRELAIEILKRNLKISWWTNIRFEERFTEDLCRLLRASGCIAVSGGLEVASDRLLEMMQKGVTVAQVARVARNFTASGIMVHAYLMYGFPTQTAQETIDSLEMVRQLFLNNVLQSGFWHLFAMTSHAPIGIDPGAFRVVRTGPELGLFADNDLSHDDPEGADHELFGEGLKKALFNYMHGICFELPLQEWFDFKIPKTKVSPHFIENAIMVETGKVMKPNAKMVWLGNMPELEISENLKKGKTTTTYRLVIENKNGTDTISVSPREGEWLETMVREMMPKAGKKEMTFADFEQHYSSANLGEFDRFLGSKPWRSLREYGLVMV

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
4 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
5 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
6 2582581873 Chryseobacterium sp. OV259 Isolate Rhizosphere
7 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
8 2738541278 Niastella sp. CF465 Isolate Unclassified
9 2738541284 Pedobacter sp. YR016 Isolate Unclassified
10 2738543023 Pedobacter sp. OK628 Isolate Unclassified
11 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
12 2818991444 Filimonas endophytica 3197 Isolate Unclassified
13 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
14 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
15 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
16 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
17 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
18 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
19 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
20 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
21 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
22 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
23 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
24 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
25 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
26 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
27 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
28 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
29 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
30 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
31 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
32 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
33 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
34 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
36 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
37 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
38 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
39 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
40 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
41 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
42 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
58 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
59 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
62 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
63 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
64 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
65 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
66 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
67 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
68 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
70 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
82 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
83 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
84 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
87 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
88 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
89 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
90 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
91 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
92 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
93 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
94 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
95 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
96 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
97 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
98 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
99 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
102 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
103 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
104 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
105 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
108 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
109 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
110 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
111 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
112 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
113 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
117 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
118 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
119 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
120 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
121 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
122 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
123 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
124 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
125 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.74
Metatranscriptomes 0
Isolates 17.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.74
Nodule 0
Rhizoplane 1.19
Rhizosphere 76.79
Stem 0
Stem Tuber 0
Unclassified 14.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_779164 2162886007 Bacteria 45880
2 rootH1_10000705 3300003323 Bacteria 55845
3 rootH1_10003251 3300003323 Bacteria 28271
4 rootH1_10074703 3300003323 Bacteria 21239
5 JGI25160J50197_1002242 3300003354 Bacteria 9077
6 Ga0055536_1008978 3300003781 Bacteria 4211
7 Ga0065165_1001300 3300005262 Bacteria 27925
8 Ga0065714_10064455 3300005288 Bacteria 72722
9 Ga0065714_10065243 3300005288 Bacteria 11504
10 Ga0065704_10070133 3300005289 Bacteria 1266035
11 Ga0065704_10071599 3300005289 Bacteria 10545
12 Ga0065704_10074185 3300005289 Bacteria 6466
13 Ga0065704_10081084 3300005289 Bacteria 3823
14 Ga0070670_100047324 3300005331 Bacteria 3700
15 Ga0070666_10000024 3300005335 Bacteria 161355
16 Ga0070682_100015688 3300005337 Bacteria 4394
17 Ga0070667_100018010 3300005367 Bacteria 5854
18 Ga0070665_100001316 3300005548 Bacteria 29624
19 Ga0068859_100000018 3300005617 Bacteria 248813
20 Ga0068859_100004404 3300005617 Bacteria 14371
21 Ga0068851_10000046 3300005834 Bacteria 79164
22 Ga0068863_100037369 3300005841 Bacteria 4623
23 Ga0068863_100053172 3300005841 Bacteria 3838
24 Ga0068858_100010503 3300005842 Bacteria 8772
25 Ga0068871_100007350 3300006358 Bacteria 7860
26 Ga0097620_100000018 3300006931 Bacteria 248813
27 Ga0097620_100004404 3300006931 Bacteria 14371
28 Ga0105240_10000134 3300009093 Bacteria 151778
29 Ga0105240_10017239 3300009093 Bacteria 9741
30 Ga0105247_10003256 3300009101 Bacteria 10648
31 Ga0114129_10004291 3300009147 Bacteria 20145
32 Ga0105241_10009119 3300009174 Bacteria 7302
33 Ga0105237_10008163 3300009545 Bacteria 11371
34 Ga0105237_10089716 3300009545 Bacteria 3063
35 Ga0105249_10013548 3300009553 Bacteria 7202
36 Ga0105239_10003381 3300010375 Bacteria 19576
37 Ga0157373_10027718 3300013100 Bacteria 4087
38 Ga0157371_10000049 3300013102 Bacteria 183917
39 Ga0157370_10044562 3300013104 Bacteria 4262
40 Ga0157378_10001699 3300013297 Bacteria 19799
41 Ga0163162_10010701 3300013306 Bacteria 8923
42 Ga0163162_10013858 3300013306 Bacteria 7875
43 Ga0157372_10005764 3300013307 Bacteria 13198
44 Ga0157380_10000553 3300014326 Bacteria 23050
45 Ga0182008_10000011 3300014497 Bacteria 297770
46 Ga0182008_10000018 3300014497 Bacteria 230609
47 Ga0182008_10019416 3300014497 Bacteria 3509
48 Ga0157379_10021797 3300014968 Bacteria 5675
49 Ga0157376_10005294 3300014969 Bacteria 9013
50 Ga0182007_10006240 3300015262 Bacteria 5129
51 Ga0182007_10011149 3300015262 Bacteria 3509
52 Ga0163161_10025115 3300017792 Bacteria 4214
53 Ga0209646_1002353 3300025246 Bacteria 4259
54 Ga0209130_1001301 3300025284 Bacteria 17090
55 Ga0209676_1001093 3300025292 Bacteria 30238
56 Ga0207426_1000032 3300025302 Bacteria 457997
57 Ga0207426_1000096 3300025302 Bacteria 271627
58 Ga0207656_10000024 3300025321 Bacteria 88657
59 Ga0207680_10000026 3300025903 Bacteria 79960
60 Ga0207695_10000010 3300025913 Bacteria 981919
61 Ga0207695_10027106 3300025913 Bacteria 6382
62 Ga0207671_10001820 3300025914 Bacteria 23785
63 Ga0207671_10016462 3300025914 Bacteria 5745
64 Ga0207691_10020387 3300025940 Bacteria 6267
65 Ga0207689_10001176 3300025942 Bacteria 25213
66 Ga0207658_10004962 3300025986 Bacteria 9175
67 Ga0207703_10004551 3300026035 Bacteria 11366
68 Ga0207641_10000167 3300026088 Bacteria 92790
69 Ga0207641_10067481 3300026088 Bacteria 3064
70 Ga0207641_10101434 3300026088 Bacteria 2536
71 Ga0207648_10074271 3300026089 Bacteria 2963
72 Ga0207676_10000992 3300026095 Bacteria 21875
73 Ga0307515_10000001 3300028794 Bacteria 4259510
74 Ga0307515_10001274 3300028794 Bacteria 57313
75 Ga0307515_10011558 3300028794 Bacteria 16742
76 Ga0265338_10060931 3300028800 Bacteria 3310
77 Ga0265327_10000191 3300031251 Bacteria 130083
78 Ga0307508_10001393 3300031616 Bacteria 27225
79 Ga0307405_10000001 3300031731 Bacteria 1731270
80 Ga0307410_10000088 3300031852 Bacteria 30885
81 Ga0307406_10000085 3300031901 Bacteria 52922
82 Ga0307406_10029268 3300031901 Bacteria 3335
83 Ga0307407_10002857 3300031903 Bacteria 6911
84 Ga0307414_10000012 3300032004 Bacteria 322675
85 Ga0307414_10000038 3300032004 Bacteria 150774
86 Ga0307414_10000929 3300032004 Bacteria 15007
87 Ga0307414_10003451 3300032004 Bacteria 8435
88 Ga0307414_10003588 3300032004 Bacteria 8306
89 Ga0307414_10049535 3300032004 Bacteria 2905
90 Ga0307510_10020624 3300033180 Bacteria 7698
91 Ga0439431_0004209 3300041997 Bacteria 3157
92 Ga0439457_000940 3300042014 Bacteria 8741
93 Ga0451577_0000584 3300042876 Bacteria 58655
94 Ga0451577_0007755 3300042876 Bacteria 10522
95 Ga0451577_0015137 3300042876 Bacteria 7178
96 Ga0466969_0001394 3300044656 Bacteria 13031
97 Ga0466972_0000078 3300044658 Bacteria 91188
98 Ga0466972_0030489 3300044658 Bacteria 2654
99 Ga0453683_0000021 3300044673 Bacteria 284502
100 Ga0453683_0000146 3300044673 Bacteria 103930
101 Ga0453684_0000154 3300044712 Bacteria 305062
102 Ga0453684_0000549 3300044712 Bacteria 141927
103 Ga0453684_0002074 3300044712 Bacteria 50909
104 Ga0453684_0017348 3300044712 Bacteria 11156
105 Ga0453684_0141974 3300044712 Bacteria 2866
106 Ga0466957_0000951 3300044842 Bacteria 14841
107 Ga0466959_0000033 3300045049 Bacteria 109901
108 Ga0451576_0000032 3300045051 Bacteria 397014
109 Ga0451576_0000279 3300045051 Bacteria 125074
110 Ga0451576_0001274 3300045051 Bacteria 44024
111 Ga0451576_0005239 3300045051 Bacteria 16366
112 Ga0451576_0017560 3300045051 Bacteria 7864
113 Ga0495616_0008050 3300046513 Bacteria 6278
114 Ga0495643_0001598 3300046522 Bacteria 20074
115 Ga0495643_0028762 3300046522 Bacteria 3113
116 Ga0495663_0000037 3300046525 Bacteria 70080
117 Ga0495663_0003378 3300046525 Bacteria 4614
118 Ga0495609_0000224 3300046538 Bacteria 55767
119 Ga0495633_0000627 3300046558 Bacteria 33103
120 Ga0495668_0000339 3300046616 Bacteria 62659
121 Ga0495668_0002439 3300046616 Bacteria 15283
122 Ga0495636_0000047 3300047318 Bacteria 52861
123 Ga0495672_0014614 3300047320 Bacteria 5367
124 Ga0495686_0006349 3300047472 Bacteria 9068
125 Ga0496114_0018741 3300048917 Bacteria 5600
126 Ga0496115_0017917 3300048918 Bacteria 5426
127 Ga0496121_0000054 3300048924 Bacteria 307236
128 Ga0496125_0000031 3300048928 Bacteria 365156
129 Ga0496126_0048006 3300048929 Bacteria 3906
130 Ga0501047_0015289 3300049581 Bacteria 7311
131 Ga0501225_0002959 3300049705 Bacteria 5205
132 Ga0501280_000576 3300049776 Bacteria 8521
133 nmdc:mga05p37_13808_c1 3300050507 Bacteria 8443
134 Ga0500578_0000245 3300053086 Bacteria 67264
135 Ga0500583_0000099 3300053092 Bacteria 47358
136 Ga0500642_0013802 3300053130 Bacteria 2984
137 Ga0500616_0003534 3300053153 Bacteria 11863
138 Ga0500627_0029253 3300053158 Bacteria 2296
139 Ga0500633_0001181 3300053160 Bacteria 4756

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003354 JGI25160J50197_1002242 JGI25160J50197_10022425 671
2 3300025302 Ga0207426_1000032 Ga0207426_1000032179 671
3 3300005367 Ga0070667_100018010 Ga0070667_1000180104 672
4 3300025986 Ga0207658_10004962 Ga0207658_100049623 672
5 3300026089 Ga0207648_10074271 Ga0207648_100742712 682
6 3300053158 Ga0500627_0029253 Ga0500627_0029253_26_2098 688
7 3300031901 Ga0307406_10000085 Ga0307406_1000008532 699
8 3300045051 Ga0451576_0001274 Ga0451576_0001274_29264_31426 718
9 iso_pu_bacteria 2919692658 2919696407 719
10 3300005834 Ga0068851_10000046 Ga0068851_1000004610 720
11 3300025321 Ga0207656_10000024 Ga0207656_1000002429 720
12 3300044712 Ga0453684_0141974 Ga0453684_0141974_150_2318 720
13 iso_pu_bacteria 2833640130 2833642897 720
14 3300014326 Ga0157380_10000553 Ga0157380_100005535 721
15 iso_pu_bacteria 2585428095 2587866868 721
16 3300042876 Ga0451577_0007755 Ga0451577_0007755_2234_4432 722
17 3300045051 Ga0451576_0017560 Ga0451576_0017560_173_2371 722
18 iso_pu_bacteria 2511231000 2511235129 722
19 iso_pu_bacteria 2582581281 2585157663 722
20 iso_pu_bacteria 2582581282 2585162762 722
21 iso_pu_bacteria 2582581873 2585424687 722
22 iso_pu_bacteria 2739367874 2740057948 722
23 3300032004 Ga0307414_10000038 Ga0307414_1000003886 723
24 iso_pu_bacteria 2840677318 2840677339 723
25 iso_pu_bacteria 2857613821 2857615814 723
26 iso_pu_bacteria 2896085136 2896085157 723
27 iso_pu_bacteria 2904419702 2904423461 723
28 3300028800 Ga0265338_10060931 Ga0265338_100609312 724
29 iso_pu_bacteria 2919509842 2919509991 724
30 iso_pu_bacteria 2883068021 2883072768 725
31 iso_pu_bacteria 2902048731 2902048850 725
32 3300005288 Ga0065714_10065243 Ga0065714_100652435 726
33 3300005289 Ga0065704_10071599 Ga0065704_100715992 726
34 3300009147 Ga0114129_10004291 Ga0114129_100042912 726
35 3300013104 Ga0157370_10044562 Ga0157370_100445622 726
36 3300014497 Ga0182008_10000011 Ga0182008_1000001146 726
37 3300042014 Ga0439457_000940 Ga0439457_000940_3487_5673 726
38 3300044658 Ga0466972_0000078 Ga0466972_0000078_27520_29706 726
39 3300044658 Ga0466972_0030489 Ga0466972_0030489_162_2348 726
40 3300044842 Ga0466957_0000951 Ga0466957_0000951_7143_9329 726
41 3300046525 Ga0495663_0000037 Ga0495663_0000037_21328_23523 726
42 3300046525 Ga0495663_0003378 Ga0495663_0003378_296_2485 726
43 3300046538 Ga0495609_0000224 Ga0495609_0000224_42669_44861 726
44 3300049581 Ga0501047_0015289 Ga0501047_0015289_4157_6343 726
45 3300049705 Ga0501225_0002959 Ga0501225_0002959_2682_4868 726
46 3300050507 nmdc:mga05p37_13808_c1 nmdc:mga05p37_13808_c1_4889_7075 726
47 3300053086 Ga0500578_0000245 Ga0500578_0000245_8668_10854 726
48 iso_pu_bacteria 2738541278 2738729277 726
49 iso_pu_bacteria 2818991444 2819586427 726
50 iso_pu_bacteria 2818991460 2819681533 726
51 iso_pu_bacteria 2881247448 2881250163 726
52 iso_pu_bacteria 2884791551 2884792779 726
53 iso_pu_bacteria 2929177148 2929181266 726
54 iso_pu_bacteria 2945977869 2945983670 726
55 iso_pu_bacteria 2946013367 2946016920 726
56 iso_pu_bacteria 2958512119 2958514557 726
57 iso_pu_bacteria 8036736890 8036738676 726
58 3300006358 Ga0068871_100007350 Ga0068871_1000073502 727
59 3300031852 Ga0307410_10000088 Ga0307410_1000008816 727
60 3300031903 Ga0307407_10002857 Ga0307407_100028572 727
61 3300032004 Ga0307414_10000012 Ga0307414_10000012172 727
62 3300049776 Ga0501280_000576 Ga0501280_000576_5130_7337 727
63 3300005289 Ga0065704_10074185 Ga0065704_100741853 728
64 3300025940 Ga0207691_10020387 Ga0207691_100203873 728
65 3300031901 Ga0307406_10029268 Ga0307406_100292683 728
66 3300033180 Ga0307510_10020624 Ga0307510_100206244 728
67 3300048917 Ga0496114_0018741 Ga0496114_0018741_599_2791 728
68 3300003323 rootH1_10074703 rootH1_100747037 729
69 3300005331 Ga0070670_100047324 Ga0070670_1000473242 729
70 3300005335 Ga0070666_10000024 Ga0070666_1000002467 729
71 3300005337 Ga0070682_100015688 Ga0070682_1000156882 729
72 3300005617 Ga0068859_100000018 Ga0068859_100000018210 729
73 3300005617 Ga0068859_100004404 Ga0068859_1000044043 729
74 3300005841 Ga0068863_100037369 Ga0068863_1000373691 729
75 3300005841 Ga0068863_100053172 Ga0068863_1000531721 729
76 3300005842 Ga0068858_100010503 Ga0068858_1000105032 729
77 3300006931 Ga0097620_100000018 Ga0097620_100000018210 729
78 3300006931 Ga0097620_100004404 Ga0097620_1000044043 729
79 3300009093 Ga0105240_10000134 Ga0105240_1000013458 729
80 3300009101 Ga0105247_10003256 Ga0105247_100032564 729
81 3300009174 Ga0105241_10009119 Ga0105241_100091195 729
82 3300009545 Ga0105237_10008163 Ga0105237_1000816310 729
83 3300009545 Ga0105237_10089716 Ga0105237_100897161 729
84 3300009553 Ga0105249_10013548 Ga0105249_100135484 729
85 3300010375 Ga0105239_10003381 Ga0105239_1000338112 729
86 3300013297 Ga0157378_10001699 Ga0157378_100016999 729
87 3300013306 Ga0163162_10013858 Ga0163162_100138582 729
88 3300014497 Ga0182008_10019416 Ga0182008_100194161 729
89 3300014968 Ga0157379_10021797 Ga0157379_100217974 729
90 3300014969 Ga0157376_10005294 Ga0157376_100052945 729
91 3300015262 Ga0182007_10011149 Ga0182007_100111491 729
92 3300025903 Ga0207680_10000026 Ga0207680_1000002645 729
93 3300025913 Ga0207695_10000010 Ga0207695_10000010332 729
94 3300025914 Ga0207671_10001820 Ga0207671_1000182019 729
95 3300025914 Ga0207671_10016462 Ga0207671_100164623 729
96 3300025942 Ga0207689_10001176 Ga0207689_100011764 729
97 3300026035 Ga0207703_10004551 Ga0207703_100045516 729
98 3300026088 Ga0207641_10000167 Ga0207641_1000016754 729
99 3300026088 Ga0207641_10067481 Ga0207641_100674812 729
100 3300026088 Ga0207641_10101434 Ga0207641_101014341 729
101 3300026095 Ga0207676_10000992 Ga0207676_100009928 729
102 3300028794 Ga0307515_10000001 Ga0307515_100000011552 729
103 3300028794 Ga0307515_10001274 Ga0307515_1000127455 729
104 3300031251 Ga0265327_10000191 Ga0265327_1000019142 729
105 3300032004 Ga0307414_10000929 Ga0307414_100009295 729
106 3300046522 Ga0495643_0028762 Ga0495643_0028762_66_2261 729
107 3300048924 Ga0496121_0000054 Ga0496121_0000054_67944_70139 729
108 3300003323 rootH1_10000705 rootH1_1000070526 730
109 3300003781 Ga0055536_1008978 Ga0055536_10089784 730
110 3300005262 Ga0065165_1001300 Ga0065165_10013007 730
111 3300005548 Ga0070665_100001316 Ga0070665_10000131632 730
112 3300009093 Ga0105240_10017239 Ga0105240_100172395 730
113 3300013102 Ga0157371_10000049 Ga0157371_10000049114 730
114 3300013306 Ga0163162_10010701 Ga0163162_100107013 730
115 3300013307 Ga0157372_10005764 Ga0157372_100057649 730
116 3300017792 Ga0163161_10025115 Ga0163161_100251153 730
117 3300025246 Ga0209646_1002353 Ga0209646_10023532 730
118 3300025284 Ga0209130_1001301 Ga0209130_10013016 730
119 3300025292 Ga0209676_1001093 Ga0209676_10010935 730
120 3300025302 Ga0207426_1000096 Ga0207426_100009675 730
121 3300025913 Ga0207695_10027106 Ga0207695_100271061 730
122 3300032004 Ga0307414_10003588 Ga0307414_100035885 730
123 3300041997 Ga0439431_0004209 Ga0439431_0004209_32_2254 730
124 3300042876 Ga0451577_0015137 Ga0451577_0015137_4169_6370 730
125 3300044673 Ga0453683_0000021 Ga0453683_0000021_201740_203938 730
126 3300044712 Ga0453684_0002074 Ga0453684_0002074_30070_32268 730
127 3300044712 Ga0453684_0017348 Ga0453684_0017348_39_2237 730
128 3300045051 Ga0451576_0000279 Ga0451576_0000279_30070_32268 730
129 3300046513 Ga0495616_0008050 Ga0495616_0008050_43_2241 730
130 3300046522 Ga0495643_0001598 Ga0495643_0001598_14387_16585 730
131 3300046616 Ga0495668_0000339 Ga0495668_0000339_6770_8971 730
132 3300047318 Ga0495636_0000047 Ga0495636_0000047_20261_22459 730
133 3300047320 Ga0495672_0014614 Ga0495672_0014614_1112_3310 730
134 3300048918 Ga0496115_0017917 Ga0496115_0017917_1961_4159 730
135 3300048928 Ga0496125_0000031 Ga0496125_0000031_291690_293888 730
136 3300048929 Ga0496126_0048006 Ga0496126_0048006_323_2521 730
137 3300053092 Ga0500583_0000099 Ga0500583_0000099_20621_22819 730
138 3300053160 Ga0500633_0001181 Ga0500633_0001181_1520_3775 730
139 iso_pu_bacteria 2881955468 2881957340 730
140 3300005289 Ga0065704_10081084 Ga0065704_100810843 731
141 3300031731 Ga0307405_10000001 Ga0307405_100000011111 731
142 3300046616 Ga0495668_0002439 Ga0495668_0002439_11079_13280 731
143 3300047472 Ga0495686_0006349 Ga0495686_0006349_926_3127 731
144 3300053130 Ga0500642_0013802 Ga0500642_0013802_766_2967 731
145 3300053153 Ga0500616_0003534 Ga0500616_0003534_3597_5798 731
146 3300005288 Ga0065714_10064455 Ga0065714_1006445517 732
147 3300013100 Ga0157373_10027718 Ga0157373_100277182 732
148 3300014497 Ga0182008_10000018 Ga0182008_1000001892 732
149 3300015262 Ga0182007_10006240 Ga0182007_100062403 732
150 3300028794 Ga0307515_10011558 Ga0307515_100115588 732
151 3300031616 Ga0307508_10001393 Ga0307508_1000139315 732
152 3300032004 Ga0307414_10003451 Ga0307414_100034516 732
153 3300032004 Ga0307414_10049535 Ga0307414_100495351 732
154 3300044656 Ga0466969_0001394 Ga0466969_0001394_6788_8992 732
155 3300045049 Ga0466959_0000033 Ga0466959_0000033_43188_45392 732
156 iso_pu_bacteria 2738541284 2738761052 732
157 iso_pu_bacteria 2738543023 2739301145 732
158 2162886007 SwRhRL2b_contig_779164 SwRhRL2b_0427.00008910 733
159 3300003323 rootH1_10003251 rootH1_1000325124 733
160 3300005289 Ga0065704_10070133 Ga0065704_10070133661 733
161 3300042876 Ga0451577_0000584 Ga0451577_0000584_42929_45247 733
162 3300044673 Ga0453683_0000146 Ga0453683_0000146_81760_84039 733
163 3300044712 Ga0453684_0000154 Ga0453684_0000154_13447_15726 733
164 3300044712 Ga0453684_0000549 Ga0453684_0000549_95821_98139 733
165 3300045051 Ga0451576_0000032 Ga0451576_0000032_289337_291616 733
166 3300045051 Ga0451576_0005239 Ga0451576_0005239_6878_9151 733
167 3300046558 Ga0495633_0000627 Ga0495633_0000627_26554_28761 733
168 iso_pu_bacteria 2522125168 2522548161 733

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

390

553

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7av6-assembly1.cif.gz_A-2 fast in a domain-swapped dimer form 0.7475 642 676
6wtf-assembly1.cif.gz_A structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7378 198 586
6efn-assembly1.cif.gz_A-2 structure of a ripp maturase, skfb 0.7372 353 535
1olt-assembly1.cif.gz_A coproporphyrinogen iii oxidase (hemn) from escherichia coli is a radical sam enzyme. 0.7371 383 538
6wtf-assembly2.cif.gz_B structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7365 198 586
ID Description Score Start End Superfamily
af_P96395_164_380_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8224 351 520 3.80.30.20
af_Q58882_171_402_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8078 351 545 3.80.30.20
5z4pB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tubulin/FtsZ, GTPase domain 0.7931 192 243 3.40.50.1440
af_Q59015_207_434_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7924 365 540 3.80.30.20
af_A4I224_442_552_2.30.29.30 Mainly Beta;Roll;PH-domain like;Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.7904 639 689 2.30.29.30
ID Description Score Start End GO Terms
AF-A0A4V2AVJ4-F1-model_v4 Radical SAM protein 0.9772 102 529 GO:0003824
GO:0005829
GO:0046872
GO:0051536
AF-A0A3C0G9S6-F1-model_v4 Radical SAM protein 0.9755 6 556 GO:0003824
GO:0005829
GO:0046872
GO:0051536
AF-A0A4V2AVJ4-F1-model_v4 Radical SAM protein 0.9749 102 529 GO:0003824
GO:0005829
GO:0046872
GO:0051536
AF-A0A3L7RWA2-F1-model_v4 Radical SAM protein 0.971 351 624 GO:0003824
GO:0005829
GO:0051536
AF-A0A3C0G9S6-F1-model_v4 Radical SAM protein 0.9668 6 556 GO:0003824
GO:0005829
GO:0046872
GO:0051536

Feature Viewer

pLDDT pTM Quality
87.02 0.89 High
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Predicted Structure (AlphaFold2)

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