F252906

General Info

Members Datasets Scaffolds Average Seq Length
168 124 336 342

Family's Representative Sequence

Representative Sequence 3300030521|Ga0307511_10085785|Ga0307511_100857853
Length 389
Sequence VIRELIEEAVASGARREQASELLGLSARTLERWDDDREDSRHGPKSPPANKLTAEERRRIVATATSVEFRDQSPKQIVPNLADRDKYLASESTFYRVLRAENMQHRRGAARAPTARPREHVADGPWQLGSWDITYLKSHVRGQFFYLYLVEDVWSRKILGWDVHDCESTELAGALLQRIRDEAGANVDLRGWVLHSDNGSPMKGATMLATMQRLGVVPSFSRPSVSNDNPFSESLYRTMKYVPHYPRDGFASVDAARAWVASFVTWYNDKHRHSGIGFVAPAERHDGRDIAILAARRATYERARRRHPERWARHTRPWKRPAVVRLNPADGHAVTSRGPTGPRNSSPAAARPVSRPRSAEPSRGEGSLDTPGRAKATPDSRGGADRLTA

Samples

Sample ID Description Type Environment
1 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
67 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
70 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
71 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
72 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
73 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
78 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
79 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
80 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
81 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
84 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
85 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
86 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
87 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
88 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
89 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
90 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
91 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
94 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
95 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
96 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
97 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
98 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
99 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
100 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
101 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
102 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
103 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
104 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
105 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
106 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
107 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
114 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
115 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
116 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
119 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
120 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
121 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
122 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
123 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
124 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.81
Metatranscriptomes 1.19
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.38
Nodule 0
Rhizoplane 0
Rhizosphere 88.1
Stem 0
Stem Tuber 0
Unclassified 7.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307511_10085785 3300030521 Bacteria 2174
2 Ga0070690_100046487 3300005330 Unclassified 2759
3 Ga0070682_100030881 3300005337 Bacteria 3237
4 Ga0068868_100077214 3300005338 Bacteria 2664
5 Ga0070660_100147362 3300005339 Bacteria 1891
6 Ga0070689_100329648 3300005340 Bacteria 1276
7 Ga0070689_100435728 3300005340 Bacteria 1113
8 Ga0070691_10028505 3300005341 Bacteria 2609
9 Ga0070687_100095832 3300005343 Unclassified 1650
10 Ga0070688_100182265 3300005365 Bacteria 1457
11 Ga0070659_100150562 3300005366 Bacteria 1898
12 Ga0070701_10089795 3300005438 Bacteria 1681
13 Ga0070701_10154158 3300005438 Bacteria 1325
14 Ga0070700_100048881 3300005441 Bacteria 2623
15 Ga0070700_100268006 3300005441 Bacteria 1233
16 Ga0070708_100132374 3300005445 Bacteria 2309
17 Ga0070663_100019218 3300005455 Bacteria 4497
18 Ga0070678_100193626 3300005456 Bacteria 1673
19 Ga0070685_10057065 3300005466 Bacteria 2272
20 Ga0070685_10058754 3300005466 Bacteria 2243
21 Ga0070707_100180337 3300005468 Bacteria 2059
22 Ga0070684_100121837 3300005535 Bacteria 2346
23 Ga0070672_100298837 3300005543 Bacteria 1364
24 Ga0070686_100130482 3300005544 Bacteria 1737
25 Ga0070665_100171923 3300005548 Bacteria 2168
26 Ga0070665_100272301 3300005548 Unclassified 1695
27 Ga0070664_100226269 3300005564 Bacteria 1675
28 Ga0070702_100074362 3300005615 Bacteria 2016
29 Ga0070702_100243876 3300005615 Unclassified 1214
30 Ga0068859_100225604 3300005617 Bacteria 1962
31 Ga0068859_100263168 3300005617 Bacteria 1816
32 Ga0068864_100028861 3300005618 Bacteria 4695
33 Ga0068864_100224007 3300005618 Bacteria 1736
34 Ga0068861_100017653 3300005719 Bacteria 5071
35 Ga0068851_10080287 3300005834 Bacteria 1702
36 Ga0068870_10043107 3300005840 Bacteria 2352
37 Ga0068858_100227891 3300005842 Bacteria 1766
38 Ga0068860_100135635 3300005843 Bacteria 2363
39 Ga0068860_100160011 3300005843 Bacteria 2171
40 Ga0081455_10073798 3300005937 Bacteria 2819
41 Ga0081455_10188537 3300005937 Unclassified 1555
42 Ga0081539_10044185 3300005985 Bacteria 2574
43 Ga0070717_10025947 3300006028 Bacteria 4670
44 Ga0075430_100160155 3300006846 Bacteria 1873
45 Ga0075431_100264517 3300006847 Bacteria 1745
46 Ga0075429_100187510 3300006880 Bacteria 1812
47 Ga0068865_100177438 3300006881 Bacteria 1638
48 Ga0097620_100225602 3300006931 Bacteria 1962
49 Ga0097620_100263165 3300006931 Bacteria 1816
50 Ga0105242_10184459 3300009176 Bacteria 1843
51 Ga0157375_10365233 3300013308 Bacteria 1610
52 Ga0163163_10098643 3300014325 Bacteria 2943
53 Ga0157380_10110946 3300014326 Bacteria 2305
54 Ga0157376_10376288 3300014969 Bacteria 1366
55 Ga0207656_10040767 3300025321 Bacteria 1970
56 Ga0207688_10024306 3300025901 Bacteria 3322
57 Ga0207643_10092098 3300025908 Bacteria 1768
58 Ga0207662_10148278 3300025918 Bacteria 1490
59 Ga0207657_10156031 3300025919 Bacteria 1856
60 Ga0207646_10139958 3300025922 Bacteria 2179
61 Ga0207690_10157730 3300025932 Bacteria 1689
62 Ga0207670_10037814 3300025936 Bacteria 3148
63 Ga0207691_10287738 3300025940 Bacteria 1413
64 Ga0207689_10107676 3300025942 Bacteria 2290
65 Ga0207679_10161431 3300025945 Bacteria 1835
66 Ga0207677_10146462 3300026023 Bacteria 1815
67 Ga0207639_10244473 3300026041 Bacteria 1562
68 Ga0207678_10053487 3300026067 Bacteria 3479
69 Ga0207708_10083396 3300026075 Bacteria 2457
70 Ga0207708_10150349 3300026075 Bacteria 1832
71 Ga0207676_10035477 3300026095 Bacteria 3785
72 Ga0207676_10115914 3300026095 Bacteria 2250
73 Ga0207675_100030058 3300026118 Bacteria 5058
74 Ga0209966_1007778 3300027695 Bacteria 1887
75 Ga0268266_10184563 3300028379 Bacteria 1901
76 Ga0268264_10097915 3300028381 Bacteria 2543
77 Ga0268264_10226963 3300028381 Bacteria 1722
78 Ga0265334_10042861 3300028573 Bacteria 1762
79 Ga0265338_10143989 3300028800 Bacteria 1862
80 Ga0265338_10263973 3300028800 Bacteria 1264
81 Ga0307513_10155442 3300031456 Bacteria 2188
82 Ga0307513_10164169 3300031456 Bacteria 2108
83 Ga0307509_10201149 3300031507 Bacteria 1829
84 Ga0307508_10107698 3300031616 Bacteria 2386
85 Ga0316575_10027112 3300031665 Bacteria 2228
86 Ga0316575_10029145 3300031665 Bacteria 2154
87 Ga0316575_10041040 3300031665 Bacteria 1829
88 Ga0316575_10041714 3300031665 Bacteria 1815
89 Ga0316579_10051570 3300031691 Bacteria 1925
90 Ga0316579_10054502 3300031691 Bacteria 1874
91 Ga0316579_10077924 3300031691 Bacteria 1575
92 Ga0316579_10088947 3300031691 Bacteria 1474
93 Ga0316576_10062387 3300031727 Bacteria 2734
94 Ga0316576_10102183 3300031727 Bacteria 2143
95 Ga0316576_10216068 3300031727 Bacteria 1443
96 Ga0316578_10073334 3300031728 Bacteria 2028
97 Ga0316578_10081589 3300031728 Bacteria 1924
98 Ga0316578_10122082 3300031728 Bacteria 1566
99 Ga0316578_10144304 3300031728 Bacteria 1433
100 Ga0307516_10032689 3300031730 Bacteria 5238
101 Ga0307405_10129295 3300031731 Bacteria 1742
102 Ga0316577_10062624 3300031733 Bacteria 2077
103 Ga0316577_10073915 3300031733 Bacteria 1903
104 Ga0307407_10045392 3300031903 Bacteria 2482
105 Ga0307416_100182933 3300032002 Bacteria 1966
106 Ga0307416_100204542 3300032002 Bacteria 1877
107 Ga0307411_10107725 3300032005 Unclassified 1986
108 Ga0316583_10029445 3300032133 Bacteria 1957
109 Ga0316585_10025561 3300032137 Bacteria 1832
110 Ga0316585_10064218 3300032137 Unclassified 1188
111 Ga0316592_1008528 3300033524 Bacteria 2030
112 Ga0316596_1016920 3300033541 Bacteria 1829
113 Ga0373949_0003637 3300035090 Bacteria 3619
114 Ga0373936_0042194 3300035113 Bacteria 1830
115 Ga0373945_0091642 3300035116 Bacteria 1177
116 Ga0373956_0048967 3300035119 Unclassified 1894
117 Ga0373957_0022530 3300035120 Bacteria 2245
118 Ga0373961_0010239 3300035241 Bacteria 2306
119 Ga0316574_0012165 3300035398 Bacteria 4917
120 Ga0316574_0042994 3300035398 Bacteria 2790
121 Ga0316574_0065605 3300035398 Bacteria 2285
122 Ga0316574_0068907 3300035398 Bacteria 2231
123 Ga0316574_0101635 3300035398 Bacteria 1840
124 Ga0316574_0130531 3300035398 Unclassified 1617
125 Ga0373935_0133586 3300035692 Bacteria 1670
126 Ga0373933_0050845 3300035724 Unclassified 2475
127 Ga0373937_0182196 3300036401 Unclassified 1972
128 Ga0316582_0096569 3300036647 Bacteria 1951
129 Ga0316582_0131456 3300036647 Bacteria 1681
130 Ga0316584_0112666 3300036712 Bacteria 2035
131 Ga0316584_0118289 3300036712 Bacteria 1981
132 Ga0316584_0229491 3300036712 Bacteria 1361
133 Ga0316581_0018749 3300037588 Bacteria 2012
134 Ga0400484_20064 3300038725 Bacteria 4615
135 Ga0400490_06251 3300038726 Bacteria 2418
136 Ga0400483_044487 3300039062 Bacteria 2210
137 Ga0400483_076327 3300039062 Bacteria 2561
138 Ga0400483_241868 3300039062 Bacteria 1956
139 Ga0400483_250620 3300039062 Bacteria 2199
140 Ga0400489_13430 3300039093 Unclassified 1668
141 Ga0400489_95514 3300039093 Bacteria 2057
142 Ga0400487_25366 3300039110 Bacteria 1525
143 Ga0436363_1332398 3300039450 Bacteria 1458
144 Ga0495584_0070459 3300046491 Bacteria 1757
145 Ga0495666_0053906 3300046526 Bacteria 1929
146 Ga0495649_0079321 3300046694 Bacteria 1756
147 Ga0495636_0048181 3300047318 Bacteria 1780
148 Ga0495672_0077700 3300047320 Bacteria 1859
149 Ga0495682_0098760 3300049460 Unclassified 1047
150 Ga0501032_0091773 3300049569 Bacteria 2014
151 Ga0501037_0070869 3300049573 Bacteria 2536
152 Ga0501043_0090800 3300049579 Bacteria 2402
153 Ga0501046_0145354 3300049580 Bacteria 1791
154 Ga0501047_0117544 3300049581 Bacteria 2540
155 Ga0501070_0016190 3300049586 Bacteria 6266
156 Ga0501070_0169687 3300049586 Bacteria 1797
157 Ga0501073_0128004 3300049589 Bacteria 1760
158 Ga0501073_0164747 3300049589 Bacteria 1535
159 Ga0501079_0352830 3300049741 Bacteria 1153
160 Ga0501035_0062988 3300049822 Bacteria 3299
161 Ga0501044_0154286 3300049823 Bacteria 2276
162 nmdc:mga0k408_110168_c1 3300050493 Bacteria 1627
163 nmdc:mga09592_42625_c1 3300050508 Bacteria 3818
164 nmdc:mga0qj67_145748_c1 3300050509 Bacteria 1920
165 Ga0495655_0015660 3300053083 Bacteria 1616
166 Ga0500614_009288 3300053123 Bacteria 2097
167 Ga0500642_0064764 3300053130 Bacteria 1650
168 Ga0500639_048024 3300053163 Bacteria 2228
169 Ga0307511_10085785
170 Ga0070690_100046487
171 Ga0070682_100030881
172 Ga0068868_100077214
173 Ga0070660_100147362
174 Ga0070689_100329648
175 Ga0070689_100435728
176 Ga0070691_10028505
177 Ga0070687_100095832
178 Ga0070688_100182265
179 Ga0070659_100150562
180 Ga0070701_10089795
181 Ga0070701_10154158
182 Ga0070700_100048881
183 Ga0070700_100268006
184 Ga0070708_100132374
185 Ga0070663_100019218
186 Ga0070678_100193626
187 Ga0070685_10057065
188 Ga0070685_10058754
189 Ga0070707_100180337
190 Ga0070684_100121837
191 Ga0070672_100298837
192 Ga0070686_100130482
193 Ga0070665_100171923
194 Ga0070665_100272301
195 Ga0070664_100226269
196 Ga0070702_100074362
197 Ga0070702_100243876
198 Ga0068859_100225604
199 Ga0068859_100263168
200 Ga0068864_100028861
201 Ga0068864_100224007
202 Ga0068861_100017653
203 Ga0068851_10080287
204 Ga0068870_10043107
205 Ga0068858_100227891
206 Ga0068860_100135635
207 Ga0068860_100160011
208 Ga0081455_10073798
209 Ga0081455_10188537
210 Ga0081539_10044185
211 Ga0070717_10025947
212 Ga0075430_100160155
213 Ga0075431_100264517
214 Ga0075429_100187510
215 Ga0068865_100177438
216 Ga0097620_100225602
217 Ga0097620_100263165
218 Ga0105242_10184459
219 Ga0157375_10365233
220 Ga0163163_10098643
221 Ga0157380_10110946
222 Ga0157376_10376288
223 Ga0207656_10040767
224 Ga0207688_10024306
225 Ga0207643_10092098
226 Ga0207662_10148278
227 Ga0207657_10156031
228 Ga0207646_10139958
229 Ga0207690_10157730
230 Ga0207670_10037814
231 Ga0207691_10287738
232 Ga0207689_10107676
233 Ga0207679_10161431
234 Ga0207677_10146462
235 Ga0207639_10244473
236 Ga0207678_10053487
237 Ga0207708_10083396
238 Ga0207708_10150349
239 Ga0207676_10035477
240 Ga0207676_10115914
241 Ga0207675_100030058
242 Ga0209966_1007778
243 Ga0268266_10184563
244 Ga0268264_10097915
245 Ga0268264_10226963
246 Ga0265334_10042861
247 Ga0265338_10143989
248 Ga0265338_10263973
249 Ga0307513_10155442
250 Ga0307513_10164169
251 Ga0307509_10201149
252 Ga0307508_10107698
253 Ga0316575_10027112
254 Ga0316575_10029145
255 Ga0316575_10041040
256 Ga0316575_10041714
257 Ga0316579_10051570
258 Ga0316579_10054502
259 Ga0316579_10077924
260 Ga0316579_10088947
261 Ga0316576_10062387
262 Ga0316576_10102183
263 Ga0316576_10216068
264 Ga0316578_10073334
265 Ga0316578_10081589
266 Ga0316578_10122082
267 Ga0316578_10144304
268 Ga0307516_10032689
269 Ga0307405_10129295
270 Ga0316577_10062624
271 Ga0316577_10073915
272 Ga0307407_10045392
273 Ga0307416_100182933
274 Ga0307416_100204542
275 Ga0307411_10107725
276 Ga0316583_10029445
277 Ga0316585_10025561
278 Ga0316585_10064218
279 Ga0316592_1008528
280 Ga0316596_1016920
281 Ga0373949_0003637
282 Ga0373936_0042194
283 Ga0373945_0091642
284 Ga0373956_0048967
285 Ga0373957_0022530
286 Ga0373961_0010239
287 Ga0316574_0012165
288 Ga0316574_0042994
289 Ga0316574_0065605
290 Ga0316574_0068907
291 Ga0316574_0101635
292 Ga0316574_0130531
293 Ga0373935_0133586
294 Ga0373933_0050845
295 Ga0373937_0182196
296 Ga0316582_0096569
297 Ga0316582_0131456
298 Ga0316584_0112666
299 Ga0316584_0118289
300 Ga0316584_0229491
301 Ga0316581_0018749
302 Ga0400484_20064
303 Ga0400490_06251
304 Ga0400483_044487
305 Ga0400483_076327
306 Ga0400483_241868
307 Ga0400483_250620
308 Ga0400489_13430
309 Ga0400489_95514
310 Ga0400487_25366
311 Ga0436363_1332398
312 Ga0495584_0070459
313 Ga0495666_0053906
314 Ga0495649_0079321
315 Ga0495636_0048181
316 Ga0495672_0077700
317 Ga0495682_0098760
318 Ga0501032_0091773
319 Ga0501037_0070869
320 Ga0501043_0090800
321 Ga0501046_0145354
322 Ga0501047_0117544
323 Ga0501070_0016190
324 Ga0501070_0169687
325 Ga0501073_0128004
326 Ga0501073_0164747
327 Ga0501079_0352830
328 Ga0501035_0062988
329 Ga0501044_0154286
330 nmdc:mga0k408_110168_c1
331 nmdc:mga09592_42625_c1
332 nmdc:mga0qj67_145748_c1
333 Ga0495655_0015660
334 Ga0500614_009288
335 Ga0500642_0064764
336 Ga0500639_048024

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13683

rve_3

Integrase core domain

214

281

0.96

PF00665

rve

Integrase core domain

122

226

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
2x6s-assembly3.cif.gz_B human foamy virus integrase - catalytic core. magnesium-bound structure. 0.7589 76 236
4fw1-assembly1.cif.gz_B crystal structure of two-domain rsv integrase covalently linked with dna 0.7572 76 238
6um8-assembly1.cif.gz_A hiv integrase in complex with compound-14 0.7494 80 240
1cxq-assembly1.cif.gz_A-2 atomic resolution asv integrase core domain from ammonium sulfate 0.7403 78 222
7ku7-assembly1.cif.gz_C cryo-em structure of rous sarcoma virus cleaved synaptic complex (csc) with hiv-1 integrase strand transfer inhibitor mk-2048. cluster identified by 3-dimensional variability analysis in cryosparc. 0.7395 76 238
ID Description Score Start End Superfamily
af_I6YC39_133_303_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9198 76 245 3.30.420.10
af_I6YC39_133_303_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8993 76 245 3.30.420.10
af_Q47718_102_174_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8727 76 147 3.30.420.10
af_P0CF80_124_283_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8613 76 236 3.30.420.10
af_P0CF80_124_283_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8415 76 236 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A084XWM1-F1-model_v4 Integrase catalytic domain-containing protein 0.943 179 273 GO:0015074
AF-A0A1T4NSF3-F1-model_v4 Integrase core domain-containing protein 0.94 66 284 GO:0003676
GO:0015074
AF-A0A450X6T1-F1-model_v4 Integrase core domain-containing protein 0.9324 63 283 GO:0003676
GO:0015074
AF-A0A085A7F1-F1-model_v4 Transposase 0.9296 105 285 GO:0003676
GO:0015074
AF-A0A853RQB5-F1-model_v4 deleted 0.929 64 285

Map