F252797

General Info

Members Datasets Scaffolds Average Seq Length
168 132 336 315

Family's Representative Sequence

Representative Sequence 3300025919|Ga0207657_10296347|Ga0207657_102963471
Length 384
Sequence MTRTEEFEALRSLLFAIAYRILGSVSEAEDAVQETWLRFEASPTQPRSTKAFLSAVVTRISIDVLRSARARREEYTGTWLPEPLLTDPYQDPQRSAELADSVSMAALLLLERLTPLERAVFVLREVFGFSFREIAAAVGRSEAACRQLAMQARRHMDAGRPRFEARRREREELAGRFFGAFRDGDVDGLRELLAADVQLVGDGGGKAPQWADRFVGAETVARVLAGLITPFIRIGGLMEQHEVNGQPGAIFRDRDGRVLNTWSLDILDGRIQAIRTVLNPDKLGHVGPVGDAWALLAELNEVRHLPPDQQGCGIAQYVLDQGAGLRRTRGGSHDETCQDAGSPDDASGQTQQVLFCATRQVSGRHGASATHRERGEEQHKKRRR

Samples

Sample ID Description Type Environment
1 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
5 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
35 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
71 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
72 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
73 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
74 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
75 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
76 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
77 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
78 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
79 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
80 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
81 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
82 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
83 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
84 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
85 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
86 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
87 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
88 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
89 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
90 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
91 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
92 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
93 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
94 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
95 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
96 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
97 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
98 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
99 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
100 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
101 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
102 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
103 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
104 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
105 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
126 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
127 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
128 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
129 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
130 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
131 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
132 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.83
Metatranscriptomes 1.19
Isolates 2.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.17
Nodule 0
Rhizoplane 7.14
Rhizosphere 82.74
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207657_10296347 3300025919 Bacteria 1282
2 JGI25406J46586_10035992 3300003203 Bacteria 1801
3 Ga0006562J51391_1168073 3300003578 Bacteria 6340
4 Ga0006562J51391_1168075 3300003578 Bacteria 4890
5 Ga0055542_1000006 3300003762 Bacteria 504776
6 Ga0055529_1000013 3300003763 Bacteria 373267
7 Ga0070658_10450263 3300005327 Bacteria 1109
8 Ga0070683_100000483 3300005329 Bacteria 28059
9 Ga0070668_100221717 3300005347 Bacteria 1560
10 Ga0070711_100005855 3300005439 Bacteria 7377
11 Ga0070662_100069452 3300005457 Bacteria 2593
12 Ga0070707_100031127 3300005468 Bacteria 5081
13 Ga0070707_100070293 3300005468 Bacteria 3372
14 Ga0070698_100011641 3300005471 Bacteria 9333
15 Ga0070699_100010740 3300005518 Bacteria 7924
16 Ga0070684_100018621 3300005535 Bacteria 5726
17 Ga0070697_100000837 3300005536 Bacteria 23106
18 Ga0070665_100011342 3300005548 Bacteria 9014
19 Ga0068855_100022047 3300005563 Bacteria 7635
20 Ga0068855_100050902 3300005563 Bacteria 4880
21 Ga0068855_100053131 3300005563 Bacteria 4768
22 Ga0068857_100146433 3300005577 Bacteria 2137
23 Ga0068857_100204203 3300005577 Bacteria 1802
24 Ga0068854_100000677 3300005578 Bacteria 20362
25 Ga0068856_100055685 3300005614 Bacteria 3903
26 Ga0068852_100031165 3300005616 Bacteria 4397
27 Ga0068864_100539657 3300005618 Bacteria 1126
28 Ga0068861_100068442 3300005719 Bacteria 2744
29 Ga0081455_10003970 3300005937 Bacteria 16776
30 Ga0081455_10011596 3300005937 Bacteria 8846
31 Ga0081455_10012717 3300005937 Bacteria 8375
32 Ga0081455_10032172 3300005937 Bacteria 4731
33 Ga0081455_10032348 3300005937 Bacteria 4714
34 Ga0081455_10056832 3300005937 Bacteria 3320
35 Ga0081455_10170921 3300005937 Bacteria 1656
36 Ga0081538_10000164 3300005981 Bacteria 70649
37 Ga0081538_10004928 3300005981 Bacteria 12159
38 Ga0081538_10048814 3300005981 Bacteria 2576
39 Ga0081538_10091903 3300005981 Bacteria 1565
40 Ga0081539_10000594 3300005985 Bacteria 73925
41 Ga0081539_10002251 3300005985 Bacteria 28053
42 Ga0081539_10058444 3300005985 Bacteria 2128
43 Ga0081539_10084170 3300005985 Bacteria 1663
44 Ga0070717_10024373 3300006028 Bacteria 4804
45 Ga0070717_10031225 3300006028 Bacteria 4284
46 Ga0075365_10015460 3300006038 Bacteria 4618
47 Ga0070716_100050249 3300006173 Bacteria 2366
48 Ga0075430_100009975 3300006846 Bacteria 8035
49 Ga0075431_100004704 3300006847 Bacteria 13407
50 Ga0075431_100041331 3300006847 Bacteria 4753
51 Ga0075429_100003483 3300006880 Bacteria 13430
52 Ga0068865_100039073 3300006881 Bacteria 3217
53 Ga0105251_10053845 3300009011 Bacteria 1912
54 Ga0105250_10031856 3300009092 Bacteria 2117
55 Ga0105240_10028735 3300009093 Bacteria 7254
56 Ga0105245_10128301 3300009098 Bacteria 2376
57 Ga0114129_10147268 3300009147 Bacteria 3225
58 Ga0114129_10750825 3300009147 Bacteria 1249
59 Ga0105243_10065614 3300009148 Bacteria 2917
60 Ga0105243_10151699 3300009148 Bacteria 1988
61 Ga0105243_10175737 3300009148 Bacteria 1858
62 Ga0105237_10102288 3300009545 Bacteria 2857
63 Ga0105238_10004186 3300009551 Bacteria 14320
64 Ga0105238_10234080 3300009551 Bacteria 1813
65 Ga0105249_10082584 3300009553 Bacteria 2990
66 Ga0105249_10201551 3300009553 Bacteria 1948
67 Ga0105239_10287183 3300010375 Bacteria 1852
68 Ga0105246_10288377 3300011119 Bacteria 1320
69 Ga0157369_10091961 3300013105 Bacteria 3238
70 Ga0157374_10104757 3300013296 Bacteria 2716
71 Ga0157372_10183193 3300013307 Bacteria 2425
72 Ga0157372_10503468 3300013307 Bacteria 1412
73 Ga0157375_10561943 3300013308 Bacteria 1302
74 Ga0157380_10209396 3300014326 Bacteria 1736
75 Ga0157376_10365155 3300014969 Bacteria 1386
76 Ga0209672_100003 3300025228 Bacteria 1560476
77 Ga0209147_101200 3300025229 Bacteria 10460
78 Ga0209148_1000004 3300025254 Bacteria 1844481
79 Ga0209455_1000022 3300025272 Bacteria 688910
80 Ga0207647_10006234 3300025904 Bacteria 8689
81 Ga0207647_10143564 3300025904 Bacteria 1398
82 Ga0207705_10083798 3300025909 Bacteria 2327
83 Ga0207705_10121440 3300025909 Bacteria 1939
84 Ga0207654_10010621 3300025911 Bacteria 4688
85 Ga0207695_10008999 3300025913 Bacteria 12422
86 Ga0207671_10000597 3300025914 Bacteria 48178
87 Ga0207660_10096736 3300025917 Bacteria 2199
88 Ga0207694_10002897 3300025924 Bacteria 13795
89 Ga0207694_10280018 3300025924 Bacteria 1370
90 Ga0207661_10000475 3300025944 Bacteria 25973
91 Ga0207640_10007166 3300025981 Bacteria 6144
92 Ga0207658_10222303 3300025986 Bacteria 1589
93 Ga0207678_10062527 3300026067 Bacteria 3199
94 Ga0207674_10133965 3300026116 Bacteria 2440
95 Ga0268266_10035596 3300028379 Bacteria 4236
96 Ga0307509_10104554 3300031507 Bacteria 2856
97 Ga0307405_10000410 3300031731 Bacteria 16136
98 Ga0307413_10002616 3300031824 Bacteria 7361
99 Ga0307410_10000900 3300031852 Bacteria 12700
100 Ga0307409_100112466 3300031995 Bacteria 2286
101 Ga0307416_100001992 3300032002 Bacteria 11456
102 Ga0307411_10149940 3300032005 Bacteria 1731
103 Ga0307415_100185457 3300032126 Bacteria 1636
104 Ga0373951_0000031 3300035091 Bacteria 55817
105 Ga0373925_0000041 3300037068 Bacteria 137281
106 Ga0395900_0005888 3300037418 Bacteria 12803
107 Ga0395900_0020324 3300037418 Bacteria 6778
108 Ga0395898_0000481 3300037466 Bacteria 79375
109 Ga0395898_0119820 3300037466 Bacteria 2521
110 Ga0395901_0081349 3300038443 Bacteria 3383
111 Ga0395901_0344019 3300038443 Bacteria 1540
112 Ga0451789_0531975 3300041443 Bacteria 3075
113 Ga0451791_1784313 3300041451 Bacteria 8012
114 Ga0451793_0091432 3300041452 Bacteria 15713
115 Ga0451795_1242366 3300041456 Bacteria 3241
116 Ga0451802_0281666 3300041460 Bacteria 3385
117 Ga0451843_1337972 3300041509 Bacteria 2346
118 Ga0439450_003496 3300042008 Bacteria 2602
119 Ga0439463_009684 3300042016 Bacteria 2369
120 Ga0439444_0002622 3300042437 Bacteria 2476
121 Ga0466963_0024184 3300044694 Bacteria 3867
122 Ga0466970_0165876 3300044765 Bacteria 1223
123 Ga0466967_0083511 3300045976 Bacteria 2888
124 Ga0466967_0242255 3300045976 Bacteria 1720
125 Ga0495594_0009652 3300046499 Bacteria 4990
126 Ga0495628_0127491 3300046516 Bacteria 1948
127 Ga0495634_0057427 3300046642 Bacteria 2598
128 Ga0495611_0019816 3300046648 Bacteria 2891
129 Ga0495635_0017748 3300046663 Bacteria 4970
130 Ga0495589_0015469 3300046794 Bacteria 3925
131 Ga0496103_0056388 3300048906 Bacteria 2439
132 Ga0496105_0005310 3300048908 Bacteria 9766
133 Ga0496108_0067815 3300048911 Bacteria 3009
134 Ga0496108_0478490 3300048911 Bacteria 1088
135 Ga0496109_0042985 3300048912 Bacteria 4096
136 Ga0496112_0131966 3300048915 Bacteria 2469
137 Ga0496114_0180485 3300048917 Bacteria 1843
138 Ga0496119_0062295 3300048922 Bacteria 2223
139 Ga0496126_0141945 3300048929 Bacteria 2066
140 Ga0501031_0002636 3300049568 Bacteria 11420
141 Ga0501032_0006984 3300049569 Bacteria 8276
142 Ga0501033_0004250 3300049570 Bacteria 11520
143 Ga0501033_0007800 3300049570 Bacteria 8292
144 Ga0501036_0076390 3300049572 Bacteria 2833
145 Ga0501037_0028834 3300049573 Bacteria 4101
146 Ga0501038_0011646 3300049574 Bacteria 8020
147 Ga0501039_0028328 3300049575 Bacteria 4311
148 Ga0501040_0052076 3300049576 Bacteria 2802
149 Ga0501043_0021658 3300049579 Bacteria 5038
150 Ga0501046_0004448 3300049580 Bacteria 12717
151 Ga0501047_0143593 3300049581 Bacteria 2264
152 Ga0501048_0002578 3300049582 Bacteria 13866
153 Ga0501067_0044451 3300049583 Bacteria 2468
154 Ga0501070_0000183 3300049586 Bacteria 58895
155 Ga0501070_0128726 3300049586 Bacteria 2092
156 Ga0501073_0168862 3300049589 Bacteria 1514
157 Ga0501080_0016560 3300049742 Bacteria 6809
158 Ga0501035_0111398 3300049822 Bacteria 2398
159 Ga0501044_0027151 3300049823 Bacteria 6055
160 Ga0501044_0108453 3300049823 Bacteria 2786
161 Ga0495601_0003059 3300053077 Bacteria 9540
162 Ga0495612_0004436 3300053078 Bacteria 5822
163 Ga0501084_0068971 3300054114 Bacteria 2960
164 2585298986 2582581312 Bacteria 7308206
165 2832006247 2832004796 Bacteria 6538017
166 2866070949 2866065130 Bacteria 6518152
167 2895435363 2895427314 Bacteria 13147766
168 3003001793 3002998708 Bacteria 11715108
169 Ga0207657_10296347
170 JGI25406J46586_10035992
171 Ga0006562J51391_1168073
172 Ga0006562J51391_1168075
173 Ga0055542_1000006
174 Ga0055529_1000013
175 Ga0070658_10450263
176 Ga0070683_100000483
177 Ga0070668_100221717
178 Ga0070711_100005855
179 Ga0070662_100069452
180 Ga0070707_100031127
181 Ga0070707_100070293
182 Ga0070698_100011641
183 Ga0070699_100010740
184 Ga0070684_100018621
185 Ga0070697_100000837
186 Ga0070665_100011342
187 Ga0068855_100022047
188 Ga0068855_100050902
189 Ga0068855_100053131
190 Ga0068857_100146433
191 Ga0068857_100204203
192 Ga0068854_100000677
193 Ga0068856_100055685
194 Ga0068852_100031165
195 Ga0068864_100539657
196 Ga0068861_100068442
197 Ga0081455_10003970
198 Ga0081455_10011596
199 Ga0081455_10012717
200 Ga0081455_10032172
201 Ga0081455_10032348
202 Ga0081455_10056832
203 Ga0081455_10170921
204 Ga0081538_10000164
205 Ga0081538_10004928
206 Ga0081538_10048814
207 Ga0081538_10091903
208 Ga0081539_10000594
209 Ga0081539_10002251
210 Ga0081539_10058444
211 Ga0081539_10084170
212 Ga0070717_10024373
213 Ga0070717_10031225
214 Ga0075365_10015460
215 Ga0070716_100050249
216 Ga0075430_100009975
217 Ga0075431_100004704
218 Ga0075431_100041331
219 Ga0075429_100003483
220 Ga0068865_100039073
221 Ga0105251_10053845
222 Ga0105250_10031856
223 Ga0105240_10028735
224 Ga0105245_10128301
225 Ga0114129_10147268
226 Ga0114129_10750825
227 Ga0105243_10065614
228 Ga0105243_10151699
229 Ga0105243_10175737
230 Ga0105237_10102288
231 Ga0105238_10004186
232 Ga0105238_10234080
233 Ga0105249_10082584
234 Ga0105249_10201551
235 Ga0105239_10287183
236 Ga0105246_10288377
237 Ga0157369_10091961
238 Ga0157374_10104757
239 Ga0157372_10183193
240 Ga0157372_10503468
241 Ga0157375_10561943
242 Ga0157380_10209396
243 Ga0157376_10365155
244 Ga0209672_100003
245 Ga0209147_101200
246 Ga0209148_1000004
247 Ga0209455_1000022
248 Ga0207647_10006234
249 Ga0207647_10143564
250 Ga0207705_10083798
251 Ga0207705_10121440
252 Ga0207654_10010621
253 Ga0207695_10008999
254 Ga0207671_10000597
255 Ga0207660_10096736
256 Ga0207694_10002897
257 Ga0207694_10280018
258 Ga0207661_10000475
259 Ga0207640_10007166
260 Ga0207658_10222303
261 Ga0207678_10062527
262 Ga0207674_10133965
263 Ga0268266_10035596
264 Ga0307509_10104554
265 Ga0307405_10000410
266 Ga0307413_10002616
267 Ga0307410_10000900
268 Ga0307409_100112466
269 Ga0307416_100001992
270 Ga0307411_10149940
271 Ga0307415_100185457
272 Ga0373951_0000031
273 Ga0373925_0000041
274 Ga0395900_0005888
275 Ga0395900_0020324
276 Ga0395898_0000481
277 Ga0395898_0119820
278 Ga0395901_0081349
279 Ga0395901_0344019
280 Ga0451789_0531975
281 Ga0451791_1784313
282 Ga0451793_0091432
283 Ga0451795_1242366
284 Ga0451802_0281666
285 Ga0451843_1337972
286 Ga0439450_003496
287 Ga0439463_009684
288 Ga0439444_0002622
289 Ga0466963_0024184
290 Ga0466970_0165876
291 Ga0466967_0083511
292 Ga0466967_0242255
293 Ga0495594_0009652
294 Ga0495628_0127491
295 Ga0495634_0057427
296 Ga0495611_0019816
297 Ga0495635_0017748
298 Ga0495589_0015469
299 Ga0496103_0056388
300 Ga0496105_0005310
301 Ga0496108_0067815
302 Ga0496108_0478490
303 Ga0496109_0042985
304 Ga0496112_0131966
305 Ga0496114_0180485
306 Ga0496119_0062295
307 Ga0496126_0141945
308 Ga0501031_0002636
309 Ga0501032_0006984
310 Ga0501033_0004250
311 Ga0501033_0007800
312 Ga0501036_0076390
313 Ga0501037_0028834
314 Ga0501038_0011646
315 Ga0501039_0028328
316 Ga0501040_0052076
317 Ga0501043_0021658
318 Ga0501046_0004448
319 Ga0501047_0143593
320 Ga0501048_0002578
321 Ga0501067_0044451
322 Ga0501070_0000183
323 Ga0501070_0128726
324 Ga0501073_0168862
325 Ga0501080_0016560
326 Ga0501035_0111398
327 Ga0501044_0027151
328 Ga0501044_0108453
329 Ga0495601_0003059
330 Ga0495612_0004436
331 Ga0501084_0068971
332 2585298986
333 2832006247
334 2866070949
335 2895435363
336 3003001793

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

103

156

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

7

71

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9366 104 158
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.895 100 163
8d8k-assembly1.cif.gz_6 yeast mitochondrial small subunit assembly intermediate (state 2) 0.8936 113 162
8d8j-assembly1.cif.gz_6 yeast mitochondrial small subunit assembly intermediate (state 1) 0.893 113 162
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.8875 100 158
ID Description Score Start End Superfamily
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9058 103 158 1.10.10.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9049 103 158 1.10.10.10
2o8xC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8999 104 156 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.894 103 158 1.10.10.10
af_P23484_2_79_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.891 2 66 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A7Y4HW88-F1-model_v4 Uncharacterized protein 0.9645 184 304 GO:0016987
AF-A0A7W3ZLP2-F1-model_v4 RNA polymerase sigma-70 factor 0.9616 172 286 GO:0016987
AF-A0A656KVT4-F1-model_v4 deleted 0.9434 167 286
AF-A0A5M3X297-F1-model_v4 SnoaL-like domain-containing protein 0.93 167 287 GO:0016987
AF-A0A519FWC6-F1-model_v4 SnoaL-like domain-containing protein 0.9276 167 285 GO:0016987

Map