F252563

General Info

Members Datasets Scaffolds Average Seq Length
168 132 336 294

Family's Representative Sequence

Representative Sequence 3300009101|Ga0105247_10024903|Ga0105247_100249033
Length 325
Sequence MGNRSFIVEAAVSISSIDAMISHMHRSRLYLPKVASPPATILEHLTSRFPHIPSSVWQHRMARGLVTTSTGVILGEDSPYSYGLTILYLKEVPEEPDAQETETVIYQNDEILVADKPHGMPVTPAGNHVSRALVNRLRERTGFDNLAPLHRLDRDTAGLVLFAIKPEFRAHYHELFARGTIEREYFAIASVRAVPGERHWILRNHLTAGEPWFRRQIVENEPTNAITRIDLIEIRDDRGLFRLVPATGKKHQLRVHMSSIGFPILGDLLYPDMRQPEPSGLPLQLLAQRLAFIDPLTREQREFKSSRRLLLAPERRPDSAMDNCG

Samples

Sample ID Description Type Environment
1 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300012482 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.130510 Metagenome Rhizosphere
47 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
56 3300015685 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Metagenome Unclassified
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027552 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
90 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
91 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
92 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
93 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
94 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
95 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
96 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
97 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
98 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
99 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
100 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
101 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
102 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
103 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
104 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
105 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
106 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
107 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
111 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
112 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
113 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
114 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
115 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
116 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
118 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
121 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
122 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
123 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
124 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
125 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
126 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
127 2643221570 Acidovorax sp. Root568 Isolate Unclassified
128 2643221652 Acidovorax sp. Root402 Isolate Unclassified
129 2808606373 Pseudomonas sp. SLBN-2 Isolate Unclassified
130 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
131 2919155634 Pseudomonas fulva 1992 Isolate Unclassified
132 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.83
Metatranscriptomes 0
Isolates 4.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.55
Nodule 1.19
Rhizoplane 6.55
Rhizosphere 76.79
Stem 0
Stem Tuber 0
Unclassified 8.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105247_10024903 3300009101 Bacteria 3608
2 rootL2_10230065 3300003322 Bacteria 1140
3 Ga0055536_1002498 3300003781 Bacteria 10321
4 Ga0055531_10005618 3300003794 Bacteria 7296
5 Ga0065704_10074087 3300005289 Bacteria 6550
6 Ga0070658_10075356 3300005327 Bacteria 2767
7 Ga0070690_100098038 3300005330 Bacteria 1940
8 Ga0070690_100122664 3300005330 Bacteria 1746
9 Ga0070670_100287951 3300005331 Bacteria 1435
10 Ga0070660_100164568 3300005339 Bacteria 1789
11 Ga0070689_100097348 3300005340 Bacteria 2326
12 Ga0070675_100014116 3300005354 Bacteria 6295
13 Ga0070675_100180305 3300005354 Bacteria 1826
14 Ga0070671_100041763 3300005355 Bacteria 3811
15 Ga0070674_100103841 3300005356 Bacteria 2076
16 Ga0070673_100112287 3300005364 Bacteria 2262
17 Ga0070688_100097607 3300005365 Bacteria 1932
18 Ga0070659_100086880 3300005366 Bacteria 2503
19 Ga0070667_100023301 3300005367 Bacteria 5135
20 Ga0070701_10040305 3300005438 Unclassified 2373
21 Ga0068867_100164164 3300005459 Bacteria 1754
22 Ga0070685_10024533 3300005466 Unclassified 3313
23 Ga0068853_100040745 3300005539 Bacteria 3964
24 Ga0070693_100126560 3300005547 Bacteria 1592
25 Ga0070665_100019266 3300005548 Bacteria 6846
26 Ga0070664_100102288 3300005564 Bacteria 2493
27 Ga0068857_100267429 3300005577 Bacteria 1571
28 Ga0068857_100355920 3300005577 Bacteria 1356
29 Ga0068859_100004575 3300005617 Bacteria 14110
30 Ga0068859_100093992 3300005617 Bacteria 3050
31 Ga0068859_100108452 3300005617 Bacteria 2838
32 Ga0068864_100198592 3300005618 Bacteria 1841
33 Ga0068864_100281680 3300005618 Bacteria 1552
34 Ga0068870_10046006 3300005840 Bacteria 2287
35 Ga0068863_100001585 3300005841 Bacteria 22528
36 Ga0068863_100250494 3300005841 Bacteria 1711
37 Ga0068858_100040833 3300005842 Bacteria 4303
38 Ga0068860_100027604 3300005843 Bacteria 5466
39 Ga0075364_10125930 3300006051 Bacteria 1717
40 Ga0097621_100008940 3300006237 Bacteria 7242
41 Ga0068871_100154405 3300006358 Bacteria 1959
42 Ga0075431_100134975 3300006847 Bacteria 2544
43 Ga0075431_100274309 3300006847 Unclassified 1708
44 Ga0075433_10422533 3300006852 Unclassified 1175
45 Ga0075434_100175643 3300006871 Bacteria 2162
46 Ga0075429_100218039 3300006880 Unclassified 1672
47 Ga0068865_100186500 3300006881 Bacteria 1601
48 Ga0097620_100004575 3300006931 Bacteria 14110
49 Ga0097620_100093989 3300006931 Bacteria 3050
50 Ga0097620_100108452 3300006931 Bacteria 2838
51 Ga0099826_10034113 3300006948 Bacteria 3641
52 Ga0075435_100045377 3300007076 Bacteria 3523
53 Ga0105248_10000485 3300009177 Bacteria 45370
54 Ga0105248_10090796 3300009177 Bacteria 3440
55 Ga0105238_10026646 3300009551 Bacteria 5893
56 Ga0105238_10328627 3300009551 Bacteria 1515
57 Ga0105249_10522427 3300009553 Unclassified 1235
58 Ga0157318_1000331 3300012482 Bacteria 1916
59 Ga0157373_10114505 3300013100 Bacteria 1896
60 Ga0157373_10163963 3300013100 Bacteria 1564
61 Ga0157371_10014228 3300013102 Bacteria 6015
62 Ga0157371_10349207 3300013102 Bacteria 1077
63 Ga0157370_10060193 3300013104 Bacteria 3606
64 Ga0157369_10729882 3300013105 Bacteria 1020
65 Ga0157374_10191679 3300013296 Bacteria 2000
66 Ga0163162_10094883 3300013306 Bacteria 3070
67 Ga0163162_10620616 3300013306 Bacteria 1206
68 Ga0157372_10362732 3300013307 Bacteria 1688
69 Ga0163163_10345580 3300014325 Bacteria 1543
70 Ga0157379_10000450 3300014968 Bacteria 33302
71 Ga0183369_1006 3300015685 Bacteria 449058
72 Ga0163161_10012830 3300017792 Bacteria 5822
73 Ga0163161_10135785 3300017792 Bacteria 1859
74 Ga0209675_1004212 3300025291 Bacteria 6497
75 Ga0209676_1000235 3300025292 Bacteria 119060
76 Ga0209676_1004697 3300025292 Bacteria 7492
77 Ga0209676_1020515 3300025292 Bacteria 2243
78 Ga0209256_1005218 3300025299 Bacteria 7625
79 Ga0209256_1012587 3300025299 Bacteria 3217
80 Ga0209257_1006496 3300025304 Bacteria 7492
81 Ga0207697_10080280 3300025315 Bacteria 1374
82 Ga0207680_10009551 3300025903 Unclassified 4816
83 Ga0207643_10054347 3300025908 Bacteria 2276
84 Ga0207650_10028248 3300025925 Unclassified 4020
85 Ga0207650_10399894 3300025925 Unclassified 1137
86 Ga0207659_10000821 3300025926 Bacteria 18397
87 Ga0207659_10027503 3300025926 Bacteria 3851
88 Ga0207659_10034893 3300025926 Bacteria 3473
89 Ga0207659_10063071 3300025926 Bacteria 2677
90 Ga0207659_10188881 3300025926 Bacteria 1638
91 Ga0207706_10304936 3300025933 Bacteria 1387
92 Ga0207669_10235556 3300025937 Unclassified 1354
93 Ga0207691_10301599 3300025940 Unclassified 1376
94 Ga0207711_10001600 3300025941 Bacteria 20931
95 Ga0207689_10150153 3300025942 Bacteria 1921
96 Ga0207679_10039550 3300025945 Bacteria 3369
97 Ga0207667_10041061 3300025949 Bacteria 4921
98 Ga0207667_10515151 3300025949 Bacteria 1212
99 Ga0207651_10006627 3300025960 Bacteria 6086
100 Ga0207651_10086765 3300025960 Bacteria 2276
101 Ga0207658_10017238 3300025986 Unclassified 4976
102 Ga0207658_10255422 3300025986 Bacteria 1491
103 Ga0207703_10263682 3300026035 Bacteria 1558
104 Ga0207702_10324430 3300026078 Bacteria 1467
105 Ga0207641_10000541 3300026088 Bacteria 42410
106 Ga0207641_10196026 3300026088 Bacteria 1859
107 Ga0207648_10085032 3300026089 Bacteria 2759
108 Ga0207674_10254830 3300026116 Bacteria 1702
109 Ga0207674_10379316 3300026116 Bacteria 1367
110 Ga0207683_10006384 3300026121 Bacteria 10098
111 Ga0207683_10007513 3300026121 Bacteria 9344
112 Ga0209995_1013083 3300027471 Bacteria 1358
113 Ga0209982_1016749 3300027552 Bacteria 1115
114 Ga0209983_1001300 3300027665 Bacteria 5562
115 Ga0209983_1017102 3300027665 Bacteria 1499
116 Ga0209971_1000958 3300027682 Bacteria 7413
117 Ga0268264_10086925 3300028381 Bacteria 2687
118 Ga0268264_10235814 3300028381 Bacteria 1692
119 Ga0307508_10173106 3300031616 Bacteria 1762
120 Ga0395905_0386377 3300037471 Bacteria 1294
121 Ga0451791_0845589 3300041451 Bacteria 2317
122 Ga0451791_1228298 3300041451 Bacteria 8563
123 Ga0451797_1286170 3300041453 Bacteria 6021
124 Ga0451837_0898106 3300041494 Bacteria 4303
125 Ga0439437_001861 3300042000 Bacteria 2239
126 Ga0439432_006809 3300042006 Bacteria 4069
127 Ga0439449_0094473 3300042007 Bacteria 1104
128 Ga0439452_009040 3300042010 Bacteria 2961
129 Ga0439455_0002347 3300042012 Bacteria 3417
130 Ga0439456_010922 3300042013 Bacteria 1878
131 Ga0450911_000005 3300042115 Bacteria 233469
132 Ga0450904_000002 3300042139 Bacteria 82376
133 Ga0439446_0001333 3300042156 Bacteria 5561
134 Ga0495640_0136578 3300046533 Bacteria 1583
135 Ga0495636_0024848 3300047318 Bacteria 2431
136 Ga0495672_0029007 3300047320 Bacteria 3491
137 Ga0496101_0208609 3300048904 Bacteria 1513
138 Ga0496102_0023401 3300048905 Bacteria 5487
139 Ga0496108_0114432 3300048911 Bacteria 2309
140 Ga0496109_0064007 3300048912 Bacteria 3364
141 Ga0496112_0194816 3300048915 Bacteria 1987
142 Ga0496113_0084021 3300048916 Bacteria 2444
143 Ga0496113_0229102 3300048916 Bacteria 1481
144 Ga0496114_0176466 3300048917 Bacteria 1864
145 Ga0496119_0000204 3300048922 Bacteria 84063
146 Ga0496120_0001852 3300048923 Bacteria 23537
147 Ga0496122_0004011 3300048925 Bacteria 18745
148 Ga0496122_0061353 3300048925 Bacteria 2760
149 Ga0496125_0000135 3300048928 Bacteria 160987
150 Ga0496126_0067621 3300048929 Bacteria 3192
151 Ga0501037_0010108 3300049573 Bacteria 6924
152 Ga0501225_0000879 3300049705 Bacteria 9323
153 Ga0501035_0528222 3300049822 Bacteria 969
154 Ga0501044_0111177 3300049823 Bacteria 2748
155 Ga0501044_0647337 3300049823 Bacteria 946
156 Ga0501226_000010 3300049853 Bacteria 180094
157 nmdc:mga06r32_582779_c1 3300050510 Unclassified 1091
158 nmdc:mga0n895_55591_c1 3300050512 Unclassified 3895
159 nmdc:mga0rr50_156595_c1 3300050513 Bacteria 1846
160 Ga0495595_0173239 3300053084 Bacteria 1069
161 Ga0500658_0035359 3300053134 Bacteria 1977
162 2572255866 2571042365 Bacteria 3289345
163 2643865607 2643221570 Bacteria 5103772
164 2644294514 2643221652 Bacteria 5140275
165 2808907051 2808606373 Bacteria 4423627
166 2894025317 2894023352 Bacteria 5167372
167 2919157239 2919155634 Bacteria 4860545
168 2974323321 2974320154 Bacteria 4571377
169 Ga0105247_10024903
170 rootL2_10230065
171 Ga0055536_1002498
172 Ga0055531_10005618
173 Ga0065704_10074087
174 Ga0070658_10075356
175 Ga0070690_100098038
176 Ga0070690_100122664
177 Ga0070670_100287951
178 Ga0070660_100164568
179 Ga0070689_100097348
180 Ga0070675_100014116
181 Ga0070675_100180305
182 Ga0070671_100041763
183 Ga0070674_100103841
184 Ga0070673_100112287
185 Ga0070688_100097607
186 Ga0070659_100086880
187 Ga0070667_100023301
188 Ga0070701_10040305
189 Ga0068867_100164164
190 Ga0070685_10024533
191 Ga0068853_100040745
192 Ga0070693_100126560
193 Ga0070665_100019266
194 Ga0070664_100102288
195 Ga0068857_100267429
196 Ga0068857_100355920
197 Ga0068859_100004575
198 Ga0068859_100093992
199 Ga0068859_100108452
200 Ga0068864_100198592
201 Ga0068864_100281680
202 Ga0068870_10046006
203 Ga0068863_100001585
204 Ga0068863_100250494
205 Ga0068858_100040833
206 Ga0068860_100027604
207 Ga0075364_10125930
208 Ga0097621_100008940
209 Ga0068871_100154405
210 Ga0075431_100134975
211 Ga0075431_100274309
212 Ga0075433_10422533
213 Ga0075434_100175643
214 Ga0075429_100218039
215 Ga0068865_100186500
216 Ga0097620_100004575
217 Ga0097620_100093989
218 Ga0097620_100108452
219 Ga0099826_10034113
220 Ga0075435_100045377
221 Ga0105248_10000485
222 Ga0105248_10090796
223 Ga0105238_10026646
224 Ga0105238_10328627
225 Ga0105249_10522427
226 Ga0157318_1000331
227 Ga0157373_10114505
228 Ga0157373_10163963
229 Ga0157371_10014228
230 Ga0157371_10349207
231 Ga0157370_10060193
232 Ga0157369_10729882
233 Ga0157374_10191679
234 Ga0163162_10094883
235 Ga0163162_10620616
236 Ga0157372_10362732
237 Ga0163163_10345580
238 Ga0157379_10000450
239 Ga0183369_1006
240 Ga0163161_10012830
241 Ga0163161_10135785
242 Ga0209675_1004212
243 Ga0209676_1000235
244 Ga0209676_1004697
245 Ga0209676_1020515
246 Ga0209256_1005218
247 Ga0209256_1012587
248 Ga0209257_1006496
249 Ga0207697_10080280
250 Ga0207680_10009551
251 Ga0207643_10054347
252 Ga0207650_10028248
253 Ga0207650_10399894
254 Ga0207659_10000821
255 Ga0207659_10027503
256 Ga0207659_10034893
257 Ga0207659_10063071
258 Ga0207659_10188881
259 Ga0207706_10304936
260 Ga0207669_10235556
261 Ga0207691_10301599
262 Ga0207711_10001600
263 Ga0207689_10150153
264 Ga0207679_10039550
265 Ga0207667_10041061
266 Ga0207667_10515151
267 Ga0207651_10006627
268 Ga0207651_10086765
269 Ga0207658_10017238
270 Ga0207658_10255422
271 Ga0207703_10263682
272 Ga0207702_10324430
273 Ga0207641_10000541
274 Ga0207641_10196026
275 Ga0207648_10085032
276 Ga0207674_10254830
277 Ga0207674_10379316
278 Ga0207683_10006384
279 Ga0207683_10007513
280 Ga0209995_1013083
281 Ga0209982_1016749
282 Ga0209983_1001300
283 Ga0209983_1017102
284 Ga0209971_1000958
285 Ga0268264_10086925
286 Ga0268264_10235814
287 Ga0307508_10173106
288 Ga0395905_0386377
289 Ga0451791_0845589
290 Ga0451791_1228298
291 Ga0451797_1286170
292 Ga0451837_0898106
293 Ga0439437_001861
294 Ga0439432_006809
295 Ga0439449_0094473
296 Ga0439452_009040
297 Ga0439455_0002347
298 Ga0439456_010922
299 Ga0450911_000005
300 Ga0450904_000002
301 Ga0439446_0001333
302 Ga0495640_0136578
303 Ga0495636_0024848
304 Ga0495672_0029007
305 Ga0496101_0208609
306 Ga0496102_0023401
307 Ga0496108_0114432
308 Ga0496109_0064007
309 Ga0496112_0194816
310 Ga0496113_0084021
311 Ga0496113_0229102
312 Ga0496114_0176466
313 Ga0496119_0000204
314 Ga0496120_0001852
315 Ga0496122_0004011
316 Ga0496122_0061353
317 Ga0496125_0000135
318 Ga0496126_0067621
319 Ga0501037_0010108
320 Ga0501225_0000879
321 Ga0501035_0528222
322 Ga0501044_0111177
323 Ga0501044_0647337
324 Ga0501226_000010
325 nmdc:mga06r32_582779_c1
326 nmdc:mga0n895_55591_c1
327 nmdc:mga0rr50_156595_c1
328 Ga0495595_0173239
329 Ga0500658_0035359
330 2572255866
331 2643865607
332 2644294514
333 2808907051
334 2894025317
335 2919157239
336 2974323321

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

110

259

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.8542 90 294
1v9k-assembly2.cif.gz_B the crystal structure of the catalytic domain of pseudouridine synthase rluc from escherichia coli 0.841 92 296
1prz-assembly1.cif.gz_A crystal structure of pseudouridine synthase rlud catalytic module 0.8378 85 294
1xpi-assembly2.cif.gz_B crystal structure of the catalytic domain of e. coli pseudouridine synthase rluc 0.8263 92 296
1v9f-assembly1.cif.gz_A crystal structure of catalytic domain of pseudouridine synthase rlud from escherichia coli 0.8229 85 295
ID Description Score Start End Superfamily
af_O07166_77_287_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9677 82 296 3.30.2350.10
af_O07166_77_287_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9632 82 296 3.30.2350.10
af_Q9VKU8_216_417_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9227 91 257 3.30.2350.10
af_Q54UF9_233_473_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9056 83 256 3.30.2350.10
af_Q12069_190_394_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8999 92 256 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A833KNC8-F1-model_v4 deleted 0.9849 88 234
AF-A0A645E1Q1-F1-model_v4 Ribosomal large subunit pseudouridine synthase A (EC 5.4.99.28) 0.9794 103 300 GO:0000455
GO:0003723
GO:0160151
AF-A0A315CMM1-F1-model_v4 Pseudouridine synthase 0.9752 6 299 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A833KNC8-F1-model_v4 deleted 0.9719 88 234
AF-A0A843YPX1-F1-model_v4 Pseudouridine synthase 0.9688 8 298 GO:0000455
GO:0003723
GO:0009982
GO:0140098

Map