F251869

General Info

Members Datasets Scaffolds Average Seq Length
168 108 164 844

Family's Representative Sequence

Representative Sequence 3300005329|Ga0070683_100061304|Ga0070683_1000613042
Length 894
Sequence MICWTRTANQPTPVYGYGHVDKSDRIICGQMRGMRKPMINSIPSAQDFLAALHGLSEAEAAERLKAEGPNELPTAKPHTFFATAWGVLKEPMILLLLGAGAIYFFLGELRDSIILLGSIFVVVGIDLYQERKTEHALEALQDLSSPRAVVLRDGKQRRIAGREVVRGDIVIVSEGDRVPADGLLISAVNLSIDESLLTGESVPVRKSAADHATDVIRRPGGDDLPFVYSGTMVVRGQGYAEIKATGTSTELGRIGKALRAIEPQVTSLQREVNHLARVLAILGLSLCAIVVIGYGLTRQDWNEGLLAGITAAMSLLPEEFPVVLTVFLALGAWRISQKKVLTRHGKAIETLGSATVLCVDKTGTLTQNRMQVKSLFAAGQSLDVPDLNSLPEAFHELLEYSILASKRNPLDPMEIAFQEFGSRSLSDTEHLHHDWALVQEYPLSPVLPAMSRAWRPTDQEEFIIAAKGAPEAIIEMCREQGDLASKIKSKAAEMAAMGLRILGVAKCRMKPAPLPENQRDLPFTFVGLVGLADPVRPGVSVAVEECYRAGIRVVMITGDYPGTAQSIAREIGIAATEQVITGTELEDLNQAELRERIRTTNIFARVVPEQKLRLVNALKENGDVVAMTGDGVNDAPALKAADIGIAMGARGTDVAREAADLVLLDDSFSSIVEAIRLGRRIFDNLRKAMSFVFAVHVPIAGLALIPIFAGWPLILMPVHIVFLELIIDPACSIAFEAEPGEPGLMQRPPRDPGDALLSRRHILMSILQGASVLLIVILLYLLPLRQGESEMEARTMAFATLVIGNLMLILTNRSWTHIILATFEAPNAALWWVVSGAFSVLSLAIFVPFLRELFRFAPLSVFDITICLLGGIVSLLWFEAWKIVRNRVAALRAT

Samples

Sample ID Description Type Environment
1 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
2 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
3 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
4 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
66 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
67 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
68 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
69 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
70 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
71 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
72 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
73 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
78 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
79 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
80 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
83 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
84 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
85 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
86 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
87 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
88 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
89 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
92 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
93 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
94 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
95 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
96 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
102 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
105 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
106 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.62
Metatranscriptomes 0
Isolates 2.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.79
Nodule 1.19
Rhizoplane 5.36
Rhizosphere 88.1
Stem 0
Stem Tuber 0
Unclassified 3.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10000645 3300003215 Bacteria 21275
2 Ga0070683_100008636 3300005329 Bacteria 8658
3 Ga0070683_100061304 3300005329 Unclassified 3498
4 Ga0070670_100000744 3300005331 Bacteria 25300
5 Ga0068869_100000709 3300005334 Bacteria 18912
6 Ga0070680_100002518 3300005336 Bacteria 13579
7 Ga0070680_100025881 3300005336 Bacteria 4692
8 Ga0070660_100009619 3300005339 Bacteria 6810
9 Ga0070691_10000512 3300005341 Bacteria 14613
10 Ga0070669_100001942 3300005353 Bacteria 14924
11 Ga0070675_100018732 3300005354 Bacteria 5511
12 Ga0070659_100000524 3300005366 Bacteria 28022
13 Ga0070681_10000309 3300005458 Bacteria 39572
14 Ga0070681_10003621 3300005458 Bacteria 14497
15 Ga0070681_10015104 3300005458 Bacteria 7680
16 Ga0070679_100000743 3300005530 Bacteria 28200
17 Ga0070679_100002948 3300005530 Bacteria 15503
18 Ga0070679_100016437 3300005530 Bacteria 7137
19 Ga0070679_100020002 3300005530 Bacteria 6522
20 Ga0070684_100001250 3300005535 Bacteria 18212
21 Ga0068853_100040527 3300005539 Bacteria 3974
22 Ga0068855_100000281 3300005563 Bacteria 62765
23 Ga0068855_100032381 3300005563 Bacteria 6243
24 Ga0070664_100006265 3300005564 Bacteria 9605
25 Ga0068857_100003070 3300005577 Bacteria 13811
26 Ga0068857_100006507 3300005577 Bacteria 10023
27 Ga0068854_100038683 3300005578 Plasmid 3356
28 Ga0068856_100000402 3300005614 Bacteria 47399
29 Ga0068856_100008659 3300005614 Bacteria 9899
30 Ga0068852_100022055 3300005616 Bacteria 5098
31 Ga0068852_100136732 3300005616 Bacteria 2263
32 Ga0068858_100019903 3300005842 Bacteria 6274
33 Ga0068860_100067561 3300005843 Bacteria 3396
34 Ga0097621_100000113 3300006237 Bacteria 45891
35 Ga0075370_10003938 3300006353 Bacteria 7131
36 Ga0075434_100060470 3300006871 Bacteria 3768
37 Ga0075429_100014187 3300006880 Bacteria 6906
38 Ga0105250_10001102 3300009092 Bacteria 15243
39 Ga0105240_10009876 3300009093 Bacteria 13465
40 Ga0105240_10016659 3300009093 Bacteria 9941
41 Ga0105240_10040687 3300009093 Bacteria 5941
42 Ga0105245_10004923 3300009098 Bacteria 11748
43 Ga0105247_10000006 3300009101 Bacteria 416061
44 Ga0105242_10005778 3300009176 Bacteria 9530
45 Ga0105248_10056497 3300009177 Bacteria 4404
46 Ga0105237_10004567 3300009545 Bacteria 15985
47 Ga0105238_10000471 3300009551 Bacteria 42403
48 Ga0105238_10004354 3300009551 Bacteria 14048
49 Ga0105238_10011465 3300009551 Bacteria 8926
50 Ga0105238_10047082 3300009551 Bacteria 4349
51 Ga0105239_10003529 3300010375 Bacteria 19147
52 Ga0105239_10012111 3300010375 Bacteria 9616
53 Ga0105239_10015912 3300010375 Bacteria 8329
54 Ga0105246_10028923 3300011119 Bacteria 3644
55 Ga0157370_10005573 3300013104 Bacteria 14108
56 Ga0157370_10008138 3300013104 Bacteria 11345
57 Ga0157369_10000134 3300013105 Bacteria 105562
58 Ga0157369_10002798 3300013105 Bacteria 20816
59 Ga0157369_10053015 3300013105 Unclassified 4385
60 Ga0157374_10003514 3300013296 Bacteria 13177
61 Ga0157378_10001204 3300013297 Bacteria 23487
62 Ga0157372_10000501 3300013307 Bacteria 43087
63 Ga0157372_10001594 3300013307 Bacteria 24672
64 Ga0157372_10002861 3300013307 Bacteria 18654
65 Ga0157372_10005530 3300013307 Bacteria 13434
66 Ga0157372_10030724 3300013307 Bacteria 5877
67 Ga0207710_10000025 3300025900 Bacteria 314658
68 Ga0207647_10016323 3300025904 Bacteria 5071
69 Ga0207707_10002676 3300025912 Bacteria 15920
70 Ga0207707_10003828 3300025912 Bacteria 13334
71 Ga0207707_10035376 3300025912 Bacteria 4368
72 Ga0207695_10001310 3300025913 Bacteria 42176
73 Ga0207695_10014764 3300025913 Bacteria 9230
74 Ga0207695_10016292 3300025913 Bacteria 8705
75 Ga0207671_10009394 3300025914 Bacteria 8176
76 Ga0207660_10004416 3300025917 Bacteria 9166
77 Ga0207657_10010206 3300025919 Bacteria 9382
78 Ga0207652_10001327 3300025921 Bacteria 21959
79 Ga0207652_10010521 3300025921 Bacteria 7445
80 Ga0207646_10050343 3300025922 Bacteria 3728
81 Ga0207681_10000416 3300025923 Bacteria 29602
82 Ga0207694_10000408 3300025924 Bacteria 40107
83 Ga0207694_10002597 3300025924 Bacteria 14641
84 Ga0207690_10027823 3300025932 Bacteria 3576
85 Ga0207686_10005561 3300025934 Bacteria 6755
86 Ga0207667_10000454 3300025949 Bacteria 54890
87 Ga0207667_10002781 3300025949 Bacteria 21661
88 Ga0207667_10004541 3300025949 Bacteria 17015
89 Ga0207639_10029985 3300026041 Bacteria 3987
90 Ga0207702_10000386 3300026078 Bacteria 50267
91 Ga0207702_10007453 3300026078 Bacteria 9336
92 Ga0207702_10009389 3300026078 Bacteria 8213
93 Ga0207674_10005857 3300026116 Bacteria 14571
94 Ga0207698_10001081 3300026142 Bacteria 15859
95 Ga0265338_10000802 3300028800 Bacteria 53087
96 Ga0265339_10004112 3300031249 Bacteria 10030
97 Ga0265316_10001097 3300031344 Bacteria 29331
98 Ga0265342_10000150 3300031712 Bacteria 78890
99 Ga0373948_0000981 3300034817 Bacteria 3829
100 Ga0373945_0001723 3300035116 Bacteria 6747
101 Ga0373924_0000007 3300035410 Bacteria 54976
102 Ga0373931_0000243 3300035691 Bacteria 23126
103 Ga0373927_0008755 3300035695 Bacteria 6798
104 Ga0373937_0000253 3300036401 Bacteria 51834
105 Ga0373925_0014992 3300037068 Bacteria 5602
106 Ga0395905_0000873 3300037471 Bacteria 39333
107 Ga0451577_0000015 3300042876 Bacteria 538333
108 Ga0451577_0004930 3300042876 Archaea 13889
109 Ga0451577_0025677 3300042876 Bacteria 5344
110 Ga0453683_0007754 3300044673 Bacteria 7260
111 Ga0453683_0042792 3300044673 Bacteria 2844
112 Ga0466965_0003759 3300044683 Bacteria 6701
113 Ga0466961_0001052 3300044693 Bacteria 17006
114 Ga0453684_0000064 3300044712 Archaea 474306
115 Ga0453684_0000081 3300044712 Bacteria 402985
116 Ga0453684_0000295 3300044712 Bacteria 211570
117 Ga0453684_0000660 3300044712 Bacteria 123924
118 Ga0453684_0001144 3300044712 Bacteria 82802
119 Ga0453684_0001993 3300044712 Bacteria 52373
120 Ga0453684_0002979 3300044712 Bacteria 39559
121 Ga0453684_0003263 3300044712 Bacteria 37048
122 Ga0453684_0003691 3300044712 Bacteria 33928
123 Ga0453684_0006681 3300044712 Bacteria 21766
124 Ga0453684_0007087 3300044712 Bacteria 20916
125 Ga0453684_0008275 3300044712 Archaea 18746
126 Ga0453684_0009319 3300044712 Bacteria 17225
127 Ga0453684_0015457 3300044712 Bacteria 12066
128 Ga0453684_0017355 3300044712 Bacteria 11154
129 Ga0453684_0029616 3300044712 Bacteria 7763
130 Ga0453684_0036634 3300044712 Bacteria 6756
131 Ga0466959_0008627 3300045049 Bacteria 7214
132 Ga0451576_0000359 3300045051 Bacteria 109461
133 Ga0451576_0023130 3300045051 Bacteria 6734
134 Ga0451576_0029131 3300045051 Bacteria 5909
135 Ga0495650_0001448 3300046471 Bacteria 22806
136 Ga0495639_0011106 3300046475 Bacteria 3880
137 Ga0495596_0000491 3300046500 Bacteria 25115
138 Ga0495620_0009004 3300046515 Bacteria 5331
139 Ga0495667_0043811 3300046559 Bacteria 2965
140 Ga0495681_0000145 3300047470 Bacteria 60000
141 Ga0495686_0000401 3300047472 Bacteria 68555
142 Ga0496102_0000010 3300048905 Bacteria 324617
143 Ga0496104_0001421 3300048907 Bacteria 20741
144 Ga0496105_0012494 3300048908 Bacteria 6722
145 Ga0496112_0000268 3300048915 Bacteria 33513
146 Ga0496112_0007692 3300048915 Bacteria 9585
147 Ga0496112_0009952 3300048915 Bacteria 8602
148 Ga0496112_0065377 3300048915 Bacteria 3589
149 Ga0496113_0040571 3300048916 Bacteria 3430
150 Ga0496114_0035217 3300048917 Bacteria 4133
151 Ga0496121_0008971 3300048924 Bacteria 11602
152 Ga0496125_0012029 3300048928 Bacteria 8615
153 Ga0496126_0004191 3300048929 Bacteria 17373
154 Ga0496126_0018714 3300048929 Bacteria 6854
155 Ga0501033_0006090 3300049570 Bacteria 9459
156 Ga0501047_0007887 3300049581 Bacteria 10038
157 Ga0501077_0021772 3300049593 Bacteria 4059
158 Ga0501035_0050016 3300049822 Bacteria 3747
159 Ga0501044_0025264 3300049823 Bacteria 6296
160 nmdc:mga07m45_4050_c1 3300050496 Bacteria 7140
161 nmdc:mga05p37_46393_c1 3300050507 Bacteria 5343
162 nmdc:mga09592_13424_c1 3300050508 Bacteria 6687
163 nmdc:mga06r32_2389_c1 3300050510 Bacteria 16809
164 nmdc:mga08x19_791_c1 3300050514 Bacteria 20225

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005616 Ga0068852_100136732 Ga0068852_1001367321 713
2 3300048915 Ga0496112_0065377 Ga0496112_0065377_29_2209 715
3 3300006353 Ga0075370_10003938 Ga0075370_100039382 721
4 3300050496 nmdc:mga07m45_4050_c1 nmdc:mga07m45_4050_c1_3774_5984 721
5 3300044693 Ga0466961_0001052 Ga0466961_0001052_14690_16984 755
6 3300028800 Ga0265338_10000802 Ga0265338_1000080241 758
7 3300009177 Ga0105248_10056497 Ga0105248_100564974 777
8 iso_pu_bacteria 2791355197 2793071861 787
9 3300048929 Ga0496126_0018714 Ga0496126_0018714_2504_5056 790
10 3300010375 Ga0105239_10012111 Ga0105239_100121114 791
11 3300006880 Ga0075429_100014187 Ga0075429_1000141875 797
12 3300050507 nmdc:mga05p37_46393_c1 nmdc:mga05p37_46393_c1_2163_4667 797
13 3300050508 nmdc:mga09592_13424_c1 nmdc:mga09592_13424_c1_350_2854 797
14 3300049570 Ga0501033_0006090 Ga0501033_0006090_3787_6297 798
15 3300049581 Ga0501047_0007887 Ga0501047_0007887_3629_6139 798
16 3300049822 Ga0501035_0050016 Ga0501035_0050016_30_2540 798
17 3300049823 Ga0501044_0025264 Ga0501044_0025264_2382_4892 798
18 3300044712 Ga0453684_0008275 Ga0453684_0008275_7255_9816 799
19 3300013307 Ga0157372_10030724 Ga0157372_100307244 800
20 3300026078 Ga0207702_10007453 Ga0207702_100074533 800
21 3300050514 nmdc:mga08x19_791_c1 nmdc:mga08x19_791_c1_9107_11677 801
22 3300037471 Ga0395905_0000873 Ga0395905_0000873_12545_15076 802
23 3300005843 Ga0068860_100067561 Ga0068860_1000675612 810
24 3300013296 Ga0157374_10003514 Ga0157374_100035144 810
25 3300048907 Ga0496104_0001421 Ga0496104_0001421_8673_11237 812
26 3300048908 Ga0496105_0012494 Ga0496105_0012494_806_3370 812
27 3300048915 Ga0496112_0007692 Ga0496112_0007692_4332_6896 812
28 3300048916 Ga0496113_0040571 Ga0496113_0040571_664_3228 812
29 3300009176 Ga0105242_10005778 Ga0105242_100057787 813
30 3300025934 Ga0207686_10005561 Ga0207686_100055613 813
31 3300048915 Ga0496112_0009952 Ga0496112_0009952_1989_4628 816
32 3300009551 Ga0105238_10047082 Ga0105238_100470822 817
33 3300010375 Ga0105239_10015912 Ga0105239_100159122 817
34 3300025922 Ga0207646_10050343 Ga0207646_100503434 817
35 3300006871 Ga0075434_100060470 Ga0075434_1000604702 818
36 3300025913 Ga0207695_10016292 Ga0207695_100162923 818
37 3300044712 Ga0453684_0002979 Ga0453684_0002979_6420_9032 819
38 3300046500 Ga0495596_0000491 Ga0495596_0000491_20586_23135 819
39 3300046471 Ga0495650_0001448 Ga0495650_0001448_573_3128 820
40 3300046515 Ga0495620_0009004 Ga0495620_0009004_1210_3765 820
41 3300047470 Ga0495681_0000145 Ga0495681_0000145_37767_40322 820
42 3300044683 Ga0466965_0003759 Ga0466965_0003759_357_2882 821
43 3300045049 Ga0466959_0008627 Ga0466959_0008627_745_3270 821
44 3300047472 Ga0495686_0000401 Ga0495686_0000401_34748_37261 822
45 3300042876 Ga0451577_0004930 Ga0451577_0004930_7984_10569 823
46 3300044712 Ga0453684_0000064 Ga0453684_0000064_284727_287312 823
47 3300005329 Ga0070683_100008636 Ga0070683_1000086366 825
48 3300005336 Ga0070680_100002518 Ga0070680_1000025183 825
49 3300005341 Ga0070691_10000512 Ga0070691_100005125 825
50 3300005458 Ga0070681_10003621 Ga0070681_1000362110 825
51 3300005530 Ga0070679_100000743 Ga0070679_10000074321 825
52 3300005535 Ga0070684_100001250 Ga0070684_1000012509 825
53 3300005563 Ga0068855_100032381 Ga0068855_1000323813 825
54 3300005577 Ga0068857_100003070 Ga0068857_1000030709 825
55 3300005578 Ga0068854_100038683 Ga0068854_1000386831 825
56 3300005614 Ga0068856_100008659 Ga0068856_1000086597 825
57 3300005616 Ga0068852_100022055 Ga0068852_1000220552 825
58 3300009545 Ga0105237_10004567 Ga0105237_1000456711 825
59 3300009551 Ga0105238_10004354 Ga0105238_100043543 825
60 3300010375 Ga0105239_10003529 Ga0105239_1000352911 825
61 3300013104 Ga0157370_10005573 Ga0157370_100055734 825
62 3300013105 Ga0157369_10002798 Ga0157369_1000279811 825
63 3300013307 Ga0157372_10002861 Ga0157372_100028617 825
64 3300025912 Ga0207707_10002676 Ga0207707_100026766 825
65 3300025913 Ga0207695_10001310 Ga0207695_1000131011 825
66 3300025914 Ga0207671_10009394 Ga0207671_100093943 825
67 3300025917 Ga0207660_10004416 Ga0207660_100044165 825
68 3300025924 Ga0207694_10002597 Ga0207694_1000259711 825
69 3300025949 Ga0207667_10004541 Ga0207667_100045417 825
70 3300026078 Ga0207702_10009389 Ga0207702_100093893 825
71 3300026116 Ga0207674_10005857 Ga0207674_100058579 825
72 3300026142 Ga0207698_10001081 Ga0207698_100010817 825
73 3300035116 Ga0373945_0001723 Ga0373945_0001723_906_3512 825
74 3300035410 Ga0373924_0000007 Ga0373924_0000007_12173_14779 825
75 3300035695 Ga0373927_0008755 Ga0373927_0008755_1021_3627 825
76 3300046475 Ga0495639_0011106 Ga0495639_0011106_41_2647 825
77 3300046559 Ga0495667_0043811 Ga0495667_0043811_262_2868 825
78 3300048915 Ga0496112_0000268 Ga0496112_0000268_21873_24479 825
79 3300005334 Ga0068869_100000709 Ga0068869_10000070912 826
80 3300034817 Ga0373948_0000981 Ga0373948_0000981_201_2813 827
81 3300035691 Ga0373931_0000243 Ga0373931_0000243_3231_5843 827
82 3300044712 Ga0453684_0036634 Ga0453684_0036634_794_3328 828
83 iso_pu_bacteria 2885374607 2885377255 829
84 3300009093 Ga0105240_10016659 Ga0105240_100166593 830
85 3300005353 Ga0070669_100001942 Ga0070669_1000019423 831
86 3300009101 Ga0105247_10000006 Ga0105247_10000006263 831
87 3300025900 Ga0207710_10000025 Ga0207710_1000002525 831
88 3300025923 Ga0207681_10000416 Ga0207681_1000041610 831
89 3300048917 Ga0496114_0035217 Ga0496114_0035217_514_3081 831
90 3300048924 Ga0496121_0008971 Ga0496121_0008971_3529_6147 831
91 3300048928 Ga0496125_0012029 Ga0496125_0012029_2597_5215 831
92 3300048929 Ga0496126_0004191 Ga0496126_0004191_1464_4082 831
93 3300049593 Ga0501077_0021772 Ga0501077_0021772_691_3243 831
94 3300044673 Ga0453683_0007754 Ga0453683_0007754_2188_4731 832
95 3300044712 Ga0453684_0000295 Ga0453684_0000295_81149_83692 832
96 3300044712 Ga0453684_0007087 Ga0453684_0007087_13357_15903 832
97 3300045051 Ga0451576_0000359 Ga0451576_0000359_81168_83711 832
98 3300005331 Ga0070670_100000744 Ga0070670_1000007448 833
99 3300005354 Ga0070675_100018732 Ga0070675_1000187326 833
100 3300005366 Ga0070659_100000524 Ga0070659_10000052412 833
101 3300005458 Ga0070681_10015104 Ga0070681_100151047 833
102 3300005530 Ga0070679_100016437 Ga0070679_1000164373 833
103 3300005564 Ga0070664_100006265 Ga0070664_1000062655 833
104 3300011119 Ga0105246_10028923 Ga0105246_100289232 833
105 3300025932 Ga0207690_10027823 Ga0207690_100278233 833
106 3300044712 Ga0453684_0015457 Ga0453684_0015457_2324_4873 833
107 iso_pu_bacteria 2821443989 2821444660 833
108 3300005336 Ga0070680_100025881 Ga0070680_1000258813 834
109 3300005458 Ga0070681_10000309 Ga0070681_1000030941 834
110 3300005539 Ga0068853_100040527 Ga0068853_1000405272 834
111 3300005563 Ga0068855_100000281 Ga0068855_10000028165 834
112 3300005577 Ga0068857_100006507 Ga0068857_1000065075 834
113 3300005614 Ga0068856_100000402 Ga0068856_10000040214 834
114 3300005842 Ga0068858_100019903 Ga0068858_1000199032 834
115 3300006237 Ga0097621_100000113 Ga0097621_10000011317 834
116 3300009093 Ga0105240_10009876 Ga0105240_100098766 834
117 3300009551 Ga0105238_10000471 Ga0105238_1000047132 834
118 3300013105 Ga0157369_10000134 Ga0157369_1000013463 834
119 3300013297 Ga0157378_10001204 Ga0157378_1000120412 834
120 3300013307 Ga0157372_10000501 Ga0157372_1000050116 834
121 3300025912 Ga0207707_10003828 Ga0207707_100038287 834
122 3300025913 Ga0207695_10014764 Ga0207695_100147645 834
123 3300025924 Ga0207694_10000408 Ga0207694_1000040832 834
124 3300025949 Ga0207667_10000454 Ga0207667_100004543 834
125 3300026041 Ga0207639_10029985 Ga0207639_100299852 834
126 3300026078 Ga0207702_10000386 Ga0207702_1000038644 834
127 3300042876 Ga0451577_0000015 Ga0451577_0000015_381978_384545 834
128 3300044673 Ga0453683_0042792 Ga0453683_0042792_153_2720 834
129 3300044712 Ga0453684_0000081 Ga0453684_0000081_199472_202039 834
130 3300044712 Ga0453684_0001144 Ga0453684_0001144_57129_59801 834
131 3300044712 Ga0453684_0003263 Ga0453684_0003263_25305_27857 834
132 3300045051 Ga0451576_0029131 Ga0451576_0029131_1583_4123 834
133 iso_pu_bacteria 2908739725 2908743781 834
134 3300044712 Ga0453684_0000660 Ga0453684_0000660_52503_55148 835
135 3300044712 Ga0453684_0017355 Ga0453684_0017355_1760_4315 835
136 3300005530 Ga0070679_100002948 Ga0070679_10000294810 836
137 3300025921 Ga0207652_10001327 Ga0207652_1000132723 836
138 3300031249 Ga0265339_10004112 Ga0265339_100041125 836
139 3300031344 Ga0265316_10001097 Ga0265316_1000109720 836
140 3300031712 Ga0265342_10000150 Ga0265342_1000015012 836
141 3300009092 Ga0105250_10001102 Ga0105250_1000110213 837
142 3300013307 Ga0157372_10001594 Ga0157372_100015945 837
143 3300042876 Ga0451577_0025677 Ga0451577_0025677_1722_4283 837
144 3300044712 Ga0453684_0009319 Ga0453684_0009319_12461_15022 837
145 3300045051 Ga0451576_0023130 Ga0451576_0023130_1419_3980 837
146 3300048905 Ga0496102_0000010 Ga0496102_0000010_8544_11117 837
147 3300009093 Ga0105240_10040687 Ga0105240_100406871 838
148 3300013104 Ga0157370_10008138 Ga0157370_100081382 838
149 3300013105 Ga0157369_10053015 Ga0157369_100530152 838
150 3300013307 Ga0157372_10005530 Ga0157372_1000553013 838
151 3300025904 Ga0207647_10016323 Ga0207647_100163232 838
152 3300025912 Ga0207707_10035376 Ga0207707_100353762 838
153 3300025919 Ga0207657_10010206 Ga0207657_100102063 838
154 3300025921 Ga0207652_10010521 Ga0207652_100105213 838
155 3300025949 Ga0207667_10002781 Ga0207667_1000278112 838
156 3300044712 Ga0453684_0006681 Ga0453684_0006681_7689_10265 838
157 3300044712 Ga0453684_0029616 Ga0453684_0029616_2535_5102 838
158 3300005329 Ga0070683_100061304 Ga0070683_1000613042 839
159 3300005339 Ga0070660_100009619 Ga0070660_1000096191 839
160 3300005530 Ga0070679_100020002 Ga0070679_1000200024 839
161 3300009098 Ga0105245_10004923 Ga0105245_100049233 839
162 3300009551 Ga0105238_10011465 Ga0105238_100114652 839
163 3300036401 Ga0373937_0000253 Ga0373937_0000253_40460_43102 839
164 3300037068 Ga0373925_0014992 Ga0373925_0014992_1923_4535 839
165 3300044712 Ga0453684_0001993 Ga0453684_0001993_9742_12315 839
166 3300044712 Ga0453684_0003691 Ga0453684_0003691_7001_9589 839
167 3300050510 nmdc:mga06r32_2389_c1 nmdc:mga06r32_2389_c1_2347_4929 839
168 3300003215 JGI25153J46596_10000645 JGI25153J46596_100006451 843

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00122

E1-E2_ATPase

E1-E2 ATPase

142

338

0.97

PF13246

Cation_ATPase

Cation transport ATPase (P-type)

409

480

0.97

PF00689

Cation_ATPase_C

Cation transporting ATPase, C-terminus

712

884

0.95

PF00690

Cation_ATPase_N

Cation transporter/ATPase, N-terminus

44

103

0.94

PF00702

Hydrolase

haloacid dehalogenase-like hydrolase

354

642

0.65

Structural Annotation

Top 5 Hits

ID Description Score Start End
2voy-assembly1.cif.gz_I cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.8821 486 623
2oa0-assembly1.cif.gz_A crystal structure of calcium atpase with bound adp and cyclopiazonic acid 0.8635 1 822
2voy-assembly1.cif.gz_F cryoem model of copa, the copper transporting atpase from archaeoglobus fulgidus 0.862 90 212
2oa0-assembly1.cif.gz_A crystal structure of calcium atpase with bound adp and cyclopiazonic acid 0.8492 1 822
5zmv-assembly1.cif.gz_A crystal structure of the e309a mutant of sr ca2+-atpase in e2(tg) 0.848 1 831
ID Description Score Start End Superfamily
af_F4KHQ2_694_822_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9564 486 607 3.40.50.1000
af_A0A1D6I6W5_2_66_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.952 553 616 3.40.50.1000
af_Q4DL46_68_185_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9465 486 607 3.40.50.1000
af_P38929_741_873_3.40.50.1000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.945 486 607 3.40.50.1000
5xa7A03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HAD superfamily/HAD-like 0.9416 486 620 3.40.50.1000
ID Description Score Start End GO Terms
AF-L8NQX5-F1-model_v4 deleted 0.9565 467 822
AF-X1F8S6-F1-model_v4 Cation-transporting P-type ATPase C-terminal domain-containing protein 0.9473 524 637 GO:0005524
GO:0005886
GO:0016887
GO:0019829
GO:1902600
AF-R4M726-F1-model_v4 P-type HAD superfamily ATPase 0.9443 494 633 GO:0005388
GO:0005524
GO:0005886
GO:0012505
GO:0016887
GO:0043231
AF-A0A2J4QCR4-F1-model_v4 Carbonate dehydratase 0.9368 482 831 GO:0005388
GO:0005524
GO:0005886
GO:0016887
GO:0043231
GO:0046872
AF-X0V8J8-F1-model_v4 Cation-transporting P-type ATPase C-terminal domain-containing protein 0.9334 474 723 GO:0005524
GO:0016020
GO:0016887

Feature Viewer

pLDDT pTM Quality
81.26 0.73 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map