F251520

General Info

Members Datasets Scaffolds Average Seq Length
167 116 151 306

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2627854209|2630649048
Length 302
Sequence EAVHEFLRDLQDRLCQGLATADGEGRFVQDEWQRPEGGGGRSRVMKEGAVFEQAGVGFSDVSGATLPASATAHRPDLAGAPWRALGVSLVMHPRNPYVPTSHANVRYFEAHPPGGAPIWWFGGGFDLTPFYPFDDDVRHWHTVARDLCAPFGADRYAEHKAWCDRYFFLKHRNEARGVGGLFFDDLTGDFASCFAYQRAVGNGFLDAYLPIVERRKRTPYGEREREFQLYRRGRYVEFNLVWDRGTLFGLQSGGRTESILMSLPPRVRFEYAWQPAPGSAEARLGDYLQPRDWLGEAARDAQ

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
3 2547132181 Kosakonia sacchari SP1 Isolate Stem
4 2565956521 Vibrio rhizosphaerae DSM 18581 Isolate Rhizosphere
5 2585427591 Rahnella aquatilis OV744 Isolate Rhizosphere
6 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
7 2643221665 Acinetobacter sp. Root1280 Isolate Unclassified
8 2667528173 Rahnella sp. NFIX50 Isolate Rhizoplane
9 2728369097 Stutzerimonas balearica st101 Isolate Unclassified
10 2791354903 Mangrovibacter phragmitis MP23 Isolate Unclassified
11 2811994881 Pseudomonas sp. SLBN-26 Isolate Unclassified
12 2904474040 Rahnella aquatilis 4485 Isolate Rhizosphere
13 2919150387 Rahnella aceris 1817 Isolate Unclassified
14 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
15 2923519811 Pseudomonas otitidis SLBN-103 Isolate Rhizosphere
16 2927143783 Rahnella sp. 2050 Isolate Unclassified
17 2952252522 Salinicola sp. DM10 Isolate Unclassified
18 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
19 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
20 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
21 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
22 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
23 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
24 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
25 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
26 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
27 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
28 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
29 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
30 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
31 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
32 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
33 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
34 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
35 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
36 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
39 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
42 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
43 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
49 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
56 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
58 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
59 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
62 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
63 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
64 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
75 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
76 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
77 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
78 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
79 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
80 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
81 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
82 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
83 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
84 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
85 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
86 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
87 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
88 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
89 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
90 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
91 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
92 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
93 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
96 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
99 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
103 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
104 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
105 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
106 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
107 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
108 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
109 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
110 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
111 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
112 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
113 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
116 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.42
Metatranscriptomes 0
Isolates 9.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.36
Nodule 0
Rhizoplane 2.99
Rhizosphere 40.12
Stem 0.6
Stem Tuber 0
Unclassified 35.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_211232 2162886007 Bacteria 4798
2 JGI25156J39149_1000480 3300002705 Bacteria 24063
3 JGI25162J39368_1000002 3300002737 Bacteria 663004
4 JGI25162J39368_1000906 3300002737 Bacteria 19185
5 JGI25157J39369_1000943 3300002741 Bacteria 13711
6 JGI25163J39215_1000009 3300002771 Bacteria 93183
7 JGI25164J39214_1000006 3300002772 Bacteria 342675
8 JGI25164J39214_1000112 3300002772 Bacteria 78116
9 JGI25165J46597_1000229 3300003214 Bacteria 78116
10 Ga0055538_1000003 3300003751 Bacteria 663004
11 Ga0055539_1000003 3300003752 Bacteria 663004
12 Ga0055533_1000005 3300003756 Bacteria 663004
13 Ga0055525_1000005 3300003759 Bacteria 663004
14 Ga0055527_1002207 3300003760 Bacteria 3428
15 Ga0055535_1001129 3300003761 Bacteria 15988
16 Ga0055542_1000188 3300003762 Bacteria 75366
17 Ga0055529_1000209 3300003763 Bacteria 77662
18 Ga0055541_1000003 3300003841 Bacteria 663004
19 Ga0058692_1009624 3300003856 Bacteria 2424
20 Ga0058692_1010349 3300003856 Bacteria 2307
21 Ga0065704_10000315 3300005289 Bacteria 47286
22 Ga0070708_100002049 3300005445 Bacteria 15531
23 Ga0070693_100000756 3300005547 Bacteria 14306
24 Ga0068855_100025320 3300005563 Bacteria 7100
25 Ga0068856_100246183 3300005614 Bacteria 1803
26 Ga0075370_10105787 3300006353 Bacteria 1631
27 Ga0075434_100224922 3300006871 Bacteria 1896
28 Ga0105251_10125213 3300009011 Bacteria 1166
29 Ga0105244_10000522 3300009036 Bacteria 34314
30 Ga0105250_10000464 3300009092 Bacteria 29124
31 Ga0105250_10059723 3300009092 Bacteria 1532
32 Ga0105238_10004310 3300009551 Bacteria 14112
33 Ga0105249_10001146 3300009553 Bacteria 23471
34 Ga0157371_10001427 3300013102 Bacteria 24808
35 Ga0157370_10221123 3300013104 Bacteria 1754
36 Ga0209760_100005 3300025207 Bacteria 238315
37 Ga0209784_100001 3300025224 Bacteria 3600592
38 Ga0209566_100001 3300025225 Bacteria 3600765
39 Ga0209674_100002 3300025226 Bacteria 3600592
40 Ga0209672_100089 3300025228 Bacteria 120658
41 Ga0209563_100002 3300025230 Bacteria 2045675
42 Ga0207427_100009 3300025231 Bacteria 663036
43 Ga0207427_100051 3300025231 Bacteria 218792
44 Ga0209437_100001 3300025233 Bacteria 2045675
45 Ga0209437_100152 3300025233 Bacteria 154551
46 Ga0209258_100173 3300025242 Bacteria 144525
47 Ga0207425_1014676 3300025245 Bacteria 1774
48 Ga0209026_1000939 3300025250 Bacteria 14667
49 Ga0209677_100002 3300025253 Bacteria 2045675
50 Ga0209148_1000079 3300025254 Bacteria 288992
51 Ga0209759_1000165 3300025256 Bacteria 113117
52 Ga0209129_1000037 3300025258 Bacteria 326534
53 Ga0209233_1000099 3300025261 Bacteria 293995
54 Ga0209455_1000016 3300025272 Bacteria 753097
55 Ga0207696_1000277 3300025711 Bacteria 60768
56 Ga0207696_1020831 3300025711 Bacteria 2107
57 Ga0207655_1000154 3300025728 Bacteria 125989
58 Ga0207655_1003370 3300025728 Bacteria 11944
59 Ga0207655_1013470 3300025728 Bacteria 4694
60 Ga0207655_1019023 3300025728 Bacteria 3613
61 Ga0207713_1005049 3300025735 Bacteria 8388
62 Ga0207694_10039924 3300025924 Bacteria 3612
63 Ga0207709_10159790 3300025935 Bacteria 1570
64 Ga0207667_10192887 3300025949 Bacteria 2090
65 Ga0207712_10000546 3300025961 Bacteria 30427
66 Ga0207702_10047489 3300026078 Bacteria 3618
67 Ga0209371_1000015 3300027312 Bacteria 659640
68 Ga0209371_1000800 3300027312 Bacteria 25994
69 Ga0265322_10028309 3300028654 Bacteria 1601
70 Ga0268256_1000018 3300030500 Bacteria 594572
71 Ga0265320_10102547 3300031240 Bacteria 1317
72 Ga0265331_10000070 3300031250 Bacteria 152331
73 Ga0265331_10028571 3300031250 Bacteria 2788
74 Ga0265331_10036641 3300031250 Bacteria 2407
75 Ga0265327_10000002 3300031251 Bacteria 856593
76 Ga0265327_10000156 3300031251 Bacteria 146362
77 Ga0265327_10041346 3300031251 Bacteria 2485
78 Ga0265313_10004700 3300031595 Bacteria 10309
79 Ga0316576_10013663 3300031727 Bacteria 5406
80 Ga0316577_10029475 3300031733 Bacteria 3063
81 Ga0316577_10127112 3300031733 Bacteria 1433
82 Ga0307416_100163268 3300032002 Bacteria 2062
83 Ga0316574_0134106 3300035398 Bacteria 1594
84 Ga0316582_0196187 3300036647 Bacteria 1376
85 Ga0316584_0069224 3300036712 Bacteria 2646
86 Ga0316584_0099615 3300036712 Bacteria 2176
87 Ga0316584_0403629 3300036712 Bacteria 973
88 Ga0400484_31816 3300038725 Bacteria 12324
89 Ga0400484_32447 3300038725 Bacteria 1684
90 Ga0400484_32448 3300038725 Bacteria 1684
91 Ga0400484_39316 3300038725 Bacteria 39081
92 Ga0400484_45078 3300038725 Bacteria 11587
93 Ga0400490_22881 3300038726 Bacteria 3703
94 Ga0400490_36859 3300038726 Bacteria 7249
95 Ga0400485_00349 3300038735 Bacteria 31476
96 Ga0400488_40041 3300038741 Bacteria 27128
97 Ga0400488_46698 3300038741 Bacteria 1699
98 Ga0400486_02124 3300038742 Bacteria 1753
99 Ga0400486_29246 3300038742 Bacteria 31396
100 Ga0400483_049707 3300039062 Bacteria 6009
101 Ga0400483_049726 3300039062 Bacteria 12206
102 Ga0400483_063794 3300039062 Bacteria 6000
103 Ga0400483_090801 3300039062 Bacteria 52004
104 Ga0400483_121332 3300039062 Bacteria 8400
105 Ga0400483_133890 3300039062 Bacteria 7203
106 Ga0400483_188563 3300039062 Bacteria 10118
107 Ga0400483_192890 3300039062 Bacteria 75427
108 Ga0400483_262256 3300039062 Bacteria 5940
109 Ga0400487_01301 3300039110 Bacteria 43520
110 Ga0400487_03269 3300039110 Bacteria 3259
111 Ga0400487_12098 3300039110 Bacteria 3151
112 Ga0400487_54013 3300039110 Bacteria 10907
113 Ga0439452_001256 3300042010 Bacteria 10759
114 Ga0451577_0569817 3300042876 Bacteria 1028
115 Ga0466957_0144396 3300044842 Bacteria 1535
116 Ga0495650_0000106 3300046471 Bacteria 202178
117 Ga0495650_0012999 3300046471 Bacteria 4438
118 Ga0495643_0001333 3300046522 Bacteria 23352
119 Ga0495661_0000463 3300046665 Bacteria 43094
120 Ga0495660_0000004 3300046810 Bacteria 1003183
121 Ga0496104_0002449 3300048907 Bacteria 15981
122 Ga0496104_0134088 3300048907 Bacteria 2379
123 Ga0496105_0106884 3300048908 Bacteria 2310
124 Ga0496114_0023436 3300048917 Bacteria 5038
125 Ga0496116_0000074 3300048919 Bacteria 231767
126 Ga0496117_0001400 3300048920 Bacteria 35026
127 Ga0496117_0002921 3300048920 Bacteria 20684
128 Ga0496118_0001057 3300048921 Bacteria 42974
129 Ga0496118_0002928 3300048921 Bacteria 22166
130 Ga0496118_0003100 3300048921 Bacteria 21318
131 Ga0496118_0074523 3300048921 Bacteria 2425
132 Ga0496118_0076624 3300048921 Bacteria 2376
133 Ga0496119_0007768 3300048922 Bacteria 9561
134 Ga0496119_0010242 3300048922 Bacteria 7905
135 Ga0496120_0002173 3300048923 Bacteria 20822
136 Ga0496120_0008001 3300048923 Bacteria 7779
137 Ga0496122_0000064 3300048925 Bacteria 239959
138 Ga0496122_0071384 3300048925 Bacteria 2475
139 Ga0496123_0000049 3300048926 Bacteria 239949
140 Ga0496123_0002575 3300048926 Bacteria 22073
141 Ga0496124_0000027 3300048927 Bacteria 376097
142 Ga0496124_0007075 3300048927 Bacteria 12021
143 Ga0496125_0000052 3300048928 Bacteria 281862
144 Ga0496125_0014670 3300048928 Bacteria 7616
145 Ga0496125_0025963 3300048928 Bacteria 5352
146 Ga0496125_0253313 3300048928 Bacteria 1109
147 Ga0496126_0000710 3300048929 Bacteria 60763
148 Ga0501032_0005721 3300049569 Bacteria 9200
149 Ga0501042_0073861 3300049578 Bacteria 2439
150 nmdc:mga07m45_117135_c1 3300050496 Bacteria 1537
151 nmdc:mga0n895_40839_c1 3300050512 Bacteria 4507

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009011 Ga0105251_10125213 Ga0105251_101252132 277
2 3300013104 Ga0157370_10221123 Ga0157370_102211231 277
3 3300025728 Ga0207655_1019023 Ga0207655_10190235 277
4 3300025735 Ga0207713_1005049 Ga0207713_10050497 277
5 3300025935 Ga0207709_10159790 Ga0207709_101597901 277
6 3300046522 Ga0495643_0001333 Ga0495643_0001333_10989_11900 277
7 3300048917 Ga0496114_0023436 Ga0496114_0023436_967_1878 277
8 3300048920 Ga0496117_0001400 Ga0496117_0001400_24355_25266 277
9 3300048921 Ga0496118_0001057 Ga0496118_0001057_9761_10672 277
10 3300048926 Ga0496123_0002575 Ga0496123_0002575_7871_8782 277
11 3300048927 Ga0496124_0007075 Ga0496124_0007075_8876_9787 277
12 3300048928 Ga0496125_0014670 Ga0496125_0014670_3330_4241 277
13 3300009092 Ga0105250_10059723 Ga0105250_100597232 282
14 3300025711 Ga0207696_1020831 Ga0207696_10208312 282
15 3300036712 Ga0316584_0099615 Ga0316584_0099615_14_862 282
16 3300038725 Ga0400484_32447 Ga0400484_32447_109_1032 292
17 3300039062 Ga0400483_063794 Ga0400483_063794_1070_1993 292
18 iso_pu_bacteria 2547132181 2547697667 296
19 iso_pu_bacteria 2565956521 2566038195 296
20 iso_pu_bacteria 2791354903 2791922589 296
21 3300049569 Ga0501032_0005721 Ga0501032_0005721_1274_2170 298
22 3300042876 Ga0451577_0569817 Ga0451577_0569817_92_991 299
23 3300046471 Ga0495650_0012999 Ga0495650_0012999_2763_3662 299
24 3300048907 Ga0496104_0134088 Ga0496104_0134088_811_1710 299
25 3300048908 Ga0496105_0106884 Ga0496105_0106884_538_1437 299
26 3300048921 Ga0496118_0074523 Ga0496118_0074523_685_1584 299
27 3300048922 Ga0496119_0010242 Ga0496119_0010242_792_1691 299
28 3300048923 Ga0496120_0008001 Ga0496120_0008001_767_1666 299
29 3300048925 Ga0496122_0071384 Ga0496122_0071384_682_1581 299
30 3300003856 Ga0058692_1009624 Ga0058692_10096241 300
31 3300003856 Ga0058692_1010349 Ga0058692_10103492 300
32 3300025245 Ga0207425_1014676 Ga0207425_10146762 300
33 3300025258 Ga0209129_1000037 Ga0209129_10000372 300
34 3300027312 Ga0209371_1000015 Ga0209371_1000015473 300
35 3300027312 Ga0209371_1000800 Ga0209371_100080027 300
36 3300030500 Ga0268256_1000018 Ga0268256_1000018150 300
37 3300042010 Ga0439452_001256 Ga0439452_001256_247_1149 300
38 3300048921 Ga0496118_0003100 Ga0496118_0003100_19476_20378 300
39 3300048921 Ga0496118_0076624 Ga0496118_0076624_800_1702 300
40 3300048928 Ga0496125_0025963 Ga0496125_0025963_4308_5210 300
41 iso_pu_bacteria 2728369097 2729146380 300
42 3300002705 JGI25156J39149_1000480 JGI25156J39149_100048012 301
43 3300002737 JGI25162J39368_1000906 JGI25162J39368_100090614 301
44 3300002741 JGI25157J39369_1000943 JGI25157J39369_100094312 301
45 3300002772 JGI25164J39214_1000112 JGI25164J39214_100011258 301
46 3300003214 JGI25165J46597_1000229 JGI25165J46597_100022958 301
47 3300003760 Ga0055527_1002207 Ga0055527_10022072 301
48 3300003761 Ga0055535_1001129 Ga0055535_100112915 301
49 3300003762 Ga0055542_1000188 Ga0055542_100018812 301
50 3300003763 Ga0055529_1000209 Ga0055529_100020914 301
51 3300025228 Ga0209672_100089 Ga0209672_10008976 301
52 3300025231 Ga0207427_100051 Ga0207427_100051139 301
53 3300025233 Ga0209437_100152 Ga0209437_10015287 301
54 3300025242 Ga0209258_100173 Ga0209258_100173118 301
55 3300025250 Ga0209026_1000939 Ga0209026_10009397 301
56 3300025254 Ga0209148_1000079 Ga0209148_1000079199 301
57 3300025256 Ga0209759_1000165 Ga0209759_100016556 301
58 3300025261 Ga0209233_1000099 Ga0209233_1000099203 301
59 3300025272 Ga0209455_1000016 Ga0209455_1000016200 301
60 3300031250 Ga0265331_10036641 Ga0265331_100366413 301
61 3300031251 Ga0265327_10000002 Ga0265327_10000002378 301
62 iso_pu_bacteria 2811994881 2812369745 301
63 iso_pu_bacteria 2923519811 2923523832 301
64 3300005445 Ga0070708_100002049 Ga0070708_1000020499 302
65 3300031727 Ga0316576_10013663 Ga0316576_100136636 302
66 3300031733 Ga0316577_10029475 Ga0316577_100294754 302
67 3300032002 Ga0307416_100163268 Ga0307416_1001632681 302
68 3300036712 Ga0316584_0069224 Ga0316584_0069224_220_1128 302
69 3300038741 Ga0400488_40041 Ga0400488_40041_21770_22690 302
70 3300039110 Ga0400487_12098 Ga0400487_12098_1330_2238 302
71 3300046665 Ga0495661_0000463 Ga0495661_0000463_14577_15485 302
72 iso_pu_bacteria 2524614729 2525557457 302
73 iso_pu_bacteria 2627854209 2630649048 302
74 3300038725 Ga0400484_32448 Ga0400484_32448_109_1032 303
75 3300038725 Ga0400484_45078 Ga0400484_45078_3937_4860 303
76 3300038726 Ga0400490_36859 Ga0400490_36859_640_1563 303
77 3300038735 Ga0400485_00349 Ga0400485_00349_27153_28076 303
78 3300038742 Ga0400486_29246 Ga0400486_29246_26973_27896 303
79 3300039062 Ga0400483_049707 Ga0400483_049707_4845_5768 303
80 3300039110 Ga0400487_54013 Ga0400487_54013_4099_5022 303
81 3300005547 Ga0070693_100000756 Ga0070693_1000007568 304
82 3300006353 Ga0075370_10105787 Ga0075370_101057871 304
83 3300031733 Ga0316577_10127112 Ga0316577_101271122 304
84 3300036712 Ga0316584_0403629 Ga0316584_0403629_16_936 304
85 3300038725 Ga0400484_31816 Ga0400484_31816_3898_4827 304
86 3300038725 Ga0400484_39316 Ga0400484_39316_35895_36821 304
87 3300038741 Ga0400488_46698 Ga0400488_46698_544_1470 304
88 3300038742 Ga0400486_02124 Ga0400486_02124_694_1620 304
89 3300039062 Ga0400483_090801 Ga0400483_090801_46772_47686 304
90 3300039062 Ga0400483_121332 Ga0400483_121332_935_1861 304
91 3300039062 Ga0400483_188563 Ga0400483_188563_1343_2269 304
92 3300039062 Ga0400483_192890 Ga0400483_192890_2912_3826 304
93 3300039110 Ga0400487_03269 Ga0400487_03269_2185_3111 304
94 3300050496 nmdc:mga07m45_117135_c1 nmdc:mga07m45_117135_c1_503_1438 304
95 3300005563 Ga0068855_100025320 Ga0068855_1000253204 305
96 3300005614 Ga0068856_100246183 Ga0068856_1002461831 305
97 3300006871 Ga0075434_100224922 Ga0075434_1002249224 305
98 3300009551 Ga0105238_10004310 Ga0105238_1000431010 305
99 3300025924 Ga0207694_10039924 Ga0207694_100399241 305
100 3300025949 Ga0207667_10192887 Ga0207667_101928872 305
101 3300026078 Ga0207702_10047489 Ga0207702_100474891 305
102 3300028654 Ga0265322_10028309 Ga0265322_100283092 305
103 3300031240 Ga0265320_10102547 Ga0265320_101025472 305
104 3300031250 Ga0265331_10028571 Ga0265331_100285713 305
105 3300031251 Ga0265327_10041346 Ga0265327_100413463 305
106 3300031595 Ga0265313_10004700 Ga0265313_100047004 305
107 3300038726 Ga0400490_22881 Ga0400490_22881_2313_3245 305
108 3300048928 Ga0496125_0253313 Ga0496125_0253313_132_1061 305
109 3300049578 Ga0501042_0073861 Ga0501042_0073861_394_1311 305
110 3300050512 nmdc:mga0n895_40839_c1 nmdc:mga0n895_40839_c1_2860_3777 305
111 iso_pu_bacteria 2643221665 2644361907 305
112 3300031250 Ga0265331_10000070 Ga0265331_10000070105 306
113 3300031251 Ga0265327_10000156 Ga0265327_1000015640 306
114 3300039062 Ga0400483_049726 Ga0400483_049726_9145_10077 306
115 3300039110 Ga0400487_01301 Ga0400487_01301_41753_42685 306
116 iso_pu_bacteria 2919534386 2919538490 306
117 iso_pu_bacteria 2952252522 2952253635 306
118 3300044842 Ga0466957_0144396 Ga0466957_0144396_592_1518 307
119 iso_pu_bacteria 2585427591 2585827370 307
120 3300009553 Ga0105249_10001146 Ga0105249_100011464 308
121 3300013102 Ga0157371_10001427 Ga0157371_1000142723 308
122 3300025728 Ga0207655_1003370 Ga0207655_10033709 308
123 3300025728 Ga0207655_1013470 Ga0207655_10134703 308
124 3300025961 Ga0207712_10000546 Ga0207712_1000054628 308
125 3300035398 Ga0316574_0134106 Ga0316574_0134106_480_1406 308
126 3300039062 Ga0400483_133890 Ga0400483_133890_3920_4906 312
127 3300039062 Ga0400483_262256 Ga0400483_262256_4426_5412 312
128 iso_pu_bacteria 2667528173 2671107275 312
129 iso_pu_bacteria 2904474040 2904476213 312
130 iso_pu_bacteria 2919150387 2919152382 312
131 iso_pu_bacteria 2927143783 2927145051 312
132 3300036647 Ga0316582_0196187 Ga0316582_0196187_228_1196 314
133 2162886007 SwRhRL2b_contig_211232 SwRhRL2b_0762.00007950 316
134 3300002737 JGI25162J39368_1000002 JGI25162J39368_1000002216 316
135 3300002771 JGI25163J39215_1000009 JGI25163J39215_100000963 316
136 3300002772 JGI25164J39214_1000006 JGI25164J39214_1000006102 316
137 3300003751 Ga0055538_1000003 Ga0055538_1000003216 316
138 3300003752 Ga0055539_1000003 Ga0055539_1000003401 316
139 3300003756 Ga0055533_1000005 Ga0055533_1000005401 316
140 3300003759 Ga0055525_1000005 Ga0055525_1000005216 316
141 3300003841 Ga0055541_1000003 Ga0055541_1000003216 316
142 3300005289 Ga0065704_10000315 Ga0065704_1000031549 316
143 3300009036 Ga0105244_10000522 Ga0105244_100005226 316
144 3300009092 Ga0105250_10000464 Ga0105250_100004643 316
145 3300025207 Ga0209760_100005 Ga0209760_100005217 316
146 3300025224 Ga0209784_100001 Ga0209784_1000013156 316
147 3300025225 Ga0209566_100001 Ga0209566_1000013156 316
148 3300025226 Ga0209674_100002 Ga0209674_1000023156 316
149 3300025230 Ga0209563_100002 Ga0209563_1000021691 316
150 3300025231 Ga0207427_100009 Ga0207427_100009217 316
151 3300025233 Ga0209437_100001 Ga0209437_1000011691 316
152 3300025253 Ga0209677_100002 Ga0209677_1000021691 316
153 3300025711 Ga0207696_1000277 Ga0207696_100027730 316
154 3300025728 Ga0207655_1000154 Ga0207655_100015489 316
155 3300046471 Ga0495650_0000106 Ga0495650_0000106_169838_170821 316
156 3300046810 Ga0495660_0000004 Ga0495660_0000004_133850_134833 316
157 3300048907 Ga0496104_0002449 Ga0496104_0002449_5526_6509 316
158 3300048919 Ga0496116_0000074 Ga0496116_0000074_95309_96292 316
159 3300048920 Ga0496117_0002921 Ga0496117_0002921_8722_9705 316
160 3300048921 Ga0496118_0002928 Ga0496118_0002928_6747_7730 316
161 3300048922 Ga0496119_0007768 Ga0496119_0007768_3086_4069 316
162 3300048923 Ga0496120_0002173 Ga0496120_0002173_13105_14088 316
163 3300048925 Ga0496122_0000064 Ga0496122_0000064_106112_107095 316
164 3300048926 Ga0496123_0000049 Ga0496123_0000049_132857_133840 316
165 3300048927 Ga0496124_0000027 Ga0496124_0000027_125421_126404 316
166 3300048928 Ga0496125_0000052 Ga0496125_0000052_37044_38027 316
167 3300048929 Ga0496126_0000710 Ga0496126_0000710_32396_33346 316

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01218

Coprogen_oxidas

Coproporphyrinogen III oxidase

2

293

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
8t7w-assembly1.cif.gz_A crystal structure of oxygen-dependent coproporphyrinogen-iii oxidase (hemf) from klebsiella aerogenes 0.9897 6 303
3dwr-assembly1.cif.gz_B leishmania major coproporphyrinogen iii oxidase with bound ligand 0.9895 8 303
3ejo-assembly1.cif.gz_A coproporphyrinogen iii oxidase from leishmania donovani 0.9872 8 303
1vju-assembly1.cif.gz_A coproporphyrinogen iii oxidase from leishmania major 0.9853 8 303
2qt8-assembly1.cif.gz_A coproporphyrinogen iii oxidase from leishmania major 0.9848 8 303
ID Description Score Start End Superfamily
3dwsA00 Alpha Beta;3-Layer(aba) Sandwich;oxygen-dependent coproporphyrinogen oxidase;Coproporphyrinogen III oxidase, aerobic 0.9792 8 303 3.40.1500.10
3dwsA00 Alpha Beta;3-Layer(aba) Sandwich;oxygen-dependent coproporphyrinogen oxidase;Coproporphyrinogen III oxidase, aerobic 0.9597 8 303 3.40.1500.10
af_Q7XPL2_53_398_3.40.1500.10 Alpha Beta;3-Layer(aba) Sandwich;oxygen-dependent coproporphyrinogen oxidase;Coproporphyrinogen III oxidase, aerobic 0.9566 9 304 3.40.1500.10
af_Q9UTE2_2_312_3.40.1500.10 Alpha Beta;3-Layer(aba) Sandwich;oxygen-dependent coproporphyrinogen oxidase;Coproporphyrinogen III oxidase, aerobic 0.9367 1 303 3.40.1500.10
af_Q54IA7_2_331_3.40.1500.10 Alpha Beta;3-Layer(aba) Sandwich;oxygen-dependent coproporphyrinogen oxidase;Coproporphyrinogen III oxidase, aerobic 0.928 1 306 3.40.1500.10
ID Description Score Start End GO Terms
AF-A0A4Z0P0H0-F1-model_v4 coproporphyrinogen oxidase (EC 1.3.3.3) 0.9967 92 248 GO:0004109
GO:0005737
GO:0006782
AF-A0A353PAK3-F1-model_v4 coproporphyrinogen oxidase (EC 1.3.3.3) 0.9965 92 248 GO:0004109
GO:0005737
GO:0006782
AF-A0A5W4NJ64-F1-model_v4 coproporphyrinogen oxidase (EC 1.3.3.3) 0.9948 77 253 GO:0004109
GO:0005737
GO:0006782
AF-A0A4V5RJJ9-F1-model_v4 coproporphyrinogen oxidase (EC 1.3.3.3) 0.9941 132 254 GO:0004109
GO:0005737
GO:0006782
AF-A0A0F8WPP1-F1-model_v4 coproporphyrinogen oxidase (EC 1.3.3.3) 0.9917 8 233 GO:0004109
GO:0005737
GO:0006782

Feature Viewer

pLDDT pTM Quality
90.48 0.89 High
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Predicted Structure (AlphaFold2)

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