F251405

General Info

Members Datasets Scaffolds Average Seq Length
167 127 150 421

Family's Representative Sequence

Representative Sequence 3300050494|nmdc:mga06z11_84163_c1|nmdc:mga06z11_84163_c1_189_1601
Length 463
Sequence LISGVQGVLRLLASTRFSGDNSLKKALIAIGGGLAWFVNRIPGSAFDGQPAQETFSSDLVQRGEYVARQADCVACHSLPNGKPFAGGLEMGTPLGSIFATNITPDKQTGIGNYTLADFDRAVRQGVTPDGRRLYPAMPYPSYVKMNDDDVKALYAFFINGVEPATKENKVSGITWPLNMRWPLALWNTVFTESGTYVQKSAEDPVWNRGAYLVQGAGHCGSCHTPRAVTMNEKALDESSPLYLSGALLDGWYAPSLRQDHNTGLGRWTEDDIFQFLKNGRNQHAVVFGSMSEAYNNSLAFMTDEDLRAIGKYLKSLPGDPVRDGPPWKYPTSAGSATLSDRRAVPGAQTFEAKCSFCHGSDGNGRNEWIPPLAGAASSLSSENASQINVTLNGSARVVTDGIPDSYRMPSFREQLSDREIADVLTYARSAWGNHGGPIKAEDIRALRDHTGPVSSNPIVLQMR

Samples

Sample ID Description Type Environment
1 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
2 2513237161 Bradyrhizobium sp. WSM2793 Isolate Nodule
3 2548876994 Herbaspirillum lusitanum P6-12 Isolate Nodule
4 2724679232 Rhizobium leguminosarum Vaf12 Isolate Unclassified
5 2738541293 Rhizobium sp. GV031 Isolate Unclassified
6 2818991445 Herbaspirillum hiltneri 3195 Isolate Unclassified
7 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
8 2879099564 Bradyrhizobium japonicum UBMA197 Isolate Nodule
9 2884811622 Herbaspirillum sp. 3C11 Isolate Unclassified
10 2884836552 Herbaspirillum sp. 3R-11 Isolate Unclassified
11 2884852848 Herbaspirillum sp. 3R11 Isolate Unclassified
12 2896154374 Herbaspirillum sp. 3R-3a1 Isolate Nodule
13 2904584206 Herbaspirillum sp. 1050 Isolate Unclassified
14 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
15 3000017691 Rhodobacteraceae bacterium GH2-2 Isolate Rhizosphere
16 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
17 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
18 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
19 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
20 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
21 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
22 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
23 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
24 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
25 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
26 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
27 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
28 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
29 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
35 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
36 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
37 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
49 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
50 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
54 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
55 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
56 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
71 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
72 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
73 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
74 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
75 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
76 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
77 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
78 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
83 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
86 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
87 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
88 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
89 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
90 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
91 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
92 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
93 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
94 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
95 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
96 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
97 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
98 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
99 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
100 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
101 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
102 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
103 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
104 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
105 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
106 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
107 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
108 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
109 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
110 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
112 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
113 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
114 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
115 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
116 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
117 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
118 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
119 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
120 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
121 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
122 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
123 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
127 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.82
Metatranscriptomes 0
Isolates 10.18

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.17
Nodule 2.4
Rhizoplane 1.2
Rhizosphere 52.1
Stem 0
Stem Tuber 0
Unclassified 31.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000027 3300002704 Bacteria 123955
2 JGI25155J39150_1000802 3300002704 Bacteria 4967
3 JGI25156J39149_1000008 3300002705 Bacteria 229035
4 JGI25156J39149_1003146 3300002705 Bacteria 5554
5 JGI25154J39366_1000050 3300002738 Bacteria 124480
6 JGI25154J39366_1002123 3300002738 Bacteria 5554
7 JGI25157J39369_1000028 3300002741 Bacteria 147384
8 JGI25157J39369_1002131 3300002741 Bacteria 5554
9 rootH2_10024670 3300003320 Bacteria 13751
10 rootH2_10204608 3300003320 Bacteria 2791
11 rootH1_10075407 3300003323 Bacteria 5171
12 Ga0055532_1001728 3300003758 Bacteria 5554
13 Ga0055535_1002954 3300003761 Bacteria 5253
14 Ga0070670_100115441 3300005331 Bacteria 2315
15 Ga0068869_100058812 3300005334 Bacteria 2812
16 Ga0070660_100179189 3300005339 Bacteria 1714
17 Ga0070714_100001071 3300005435 Bacteria 19563
18 Ga0070714_100003726 3300005435 Bacteria 11424
19 Ga0070713_100035488 3300005436 Bacteria 4014
20 Ga0070711_100222282 3300005439 Bacteria 1468
21 Ga0070664_100030446 3300005564 Bacteria 4502
22 Ga0068857_100039424 3300005577 Bacteria 4184
23 Ga0068856_100019750 3300005614 Bacteria 6538
24 Ga0068852_100022073 3300005616 Bacteria 5097
25 Ga0081540_1009263 3300005983 Bacteria 6792
26 Ga0081540_1039783 3300005983 Bacteria 2461
27 Ga0070717_10006264 3300006028 Bacteria 8736
28 Ga0070717_10217564 3300006028 Bacteria 1678
29 Ga0070712_100063799 3300006175 Bacteria 2610
30 Ga0075367_10089913 3300006178 Bacteria 1867
31 Ga0075434_100162284 3300006871 Bacteria 2254
32 Ga0075436_100040116 3300006914 Bacteria 3231
33 Ga0105251_10040164 3300009011 Bacteria 2282
34 Ga0105240_10024207 3300009093 Bacteria 8012
35 Ga0105240_10117570 3300009093 Bacteria 3205
36 Ga0105238_10054006 3300009551 Bacteria 4036
37 Ga0099796_10000478 3300010159 Bacteria 6759
38 Ga0099796_10002784 3300010159 Bacteria 3927
39 Ga0157371_10000101 3300013102 Bacteria 129981
40 Ga0157369_10160412 3300013105 Bacteria 2374
41 Ga0157374_10148628 3300013296 Bacteria 2277
42 Ga0157375_10000461 3300013308 Bacteria 37005
43 Ga0182008_10014728 3300014497 Bacteria 4090
44 Ga0209435_100020 3300025206 Bacteria 229105
45 Ga0209435_100082 3300025206 Bacteria 45642
46 Ga0209147_100122 3300025229 Bacteria 138553
47 Ga0209437_100081 3300025233 Bacteria 271072
48 Ga0209258_100866 3300025242 Bacteria 16035
49 Ga0209646_1000070 3300025246 Bacteria 229105
50 Ga0209646_1000152 3300025246 Bacteria 97484
51 Ga0209026_1000057 3300025250 Bacteria 229105
52 Ga0209026_1000848 3300025250 Bacteria 16099
53 Ga0209759_1000047 3300025256 Bacteria 229105
54 Ga0209759_1000193 3300025256 Bacteria 97484
55 Ga0209455_1004667 3300025272 Bacteria 4412
56 Ga0209758_1042778 3300025297 Bacteria 1676
57 Ga0207695_10002294 3300025913 Bacteria 28544
58 Ga0207663_10041810 3300025916 Bacteria 2796
59 Ga0207657_10008383 3300025919 Bacteria 10498
60 Ga0207694_10023584 3300025924 Bacteria 4671
61 Ga0207700_10003586 3300025928 Bacteria 9043
62 Ga0207664_10007532 3300025929 Bacteria 7554
63 Ga0207689_10077276 3300025942 Bacteria 2737
64 Ga0207679_10019107 3300025945 Bacteria 4599
65 Ga0207667_10087857 3300025949 Bacteria 3216
66 Ga0207698_10006261 3300026142 Bacteria 7406
67 Ga0265334_10037029 3300028573 Bacteria 1925
68 Ga0265338_10034215 3300028800 Bacteria 4914
69 Ga0265339_10106260 3300031249 Bacteria 1456
70 Ga0265331_10000763 3300031250 Bacteria 26867
71 Ga0265327_10000153 3300031251 Bacteria 149004
72 Ga0265342_10011385 3300031712 Bacteria 6094
73 Ga0307516_10000455 3300031730 Bacteria 54123
74 Ga0307405_10000335 3300031731 Bacteria 17487
75 Ga0373927_0011569 3300035695 Bacteria 5879
76 Ga0373947_0056115 3300035725 Bacteria 2380
77 Ga0395899_0004999 3300037312 Bacteria 10320
78 Ga0395899_0089488 3300037312 Bacteria 2233
79 Ga0395899_0106658 3300037312 Bacteria 2017
80 Ga0395900_0002116 3300037418 Bacteria 22233
81 Ga0395900_0018152 3300037418 Bacteria 7178
82 Ga0395900_0040555 3300037418 Bacteria 4798
83 Ga0395900_0119249 3300037418 Bacteria 2708
84 Ga0395898_0005331 3300037466 Bacteria 13899
85 Ga0395898_0018017 3300037466 Bacteria 7205
86 Ga0395898_0160785 3300037466 Bacteria 2148
87 Ga0395901_0012499 3300038443 Bacteria 8615
88 Ga0395901_0039078 3300038443 Bacteria 4910
89 Ga0395901_0292705 3300038443 Bacteria 1689
90 Ga0436361_0014043 3300039447 Bacteria 12314
91 Ga0436361_0576321 3300039447 Bacteria 12801
92 Ga0436363_1384519 3300039450 Bacteria 5085
93 Ga0466959_0035763 3300045049 Bacteria 3671
94 Ga0495638_0000468 3300046460 Bacteria 48578
95 Ga0495607_0040755 3300046501 Bacteria 2763
96 Ga0495606_0003881 3300046507 Bacteria 15423
97 Ga0495610_0052267 3300046512 Bacteria 1984
98 Ga0495637_0004492 3300046520 Bacteria 7216
99 Ga0495648_0024432 3300046524 Bacteria 4114
100 Ga0495663_0015630 3300046525 Bacteria 2139
101 Ga0495654_0000045 3300046530 Bacteria 150593
102 Ga0495611_0058952 3300046648 Bacteria 1742
103 Ga0495625_0008994 3300046660 Bacteria 8434
104 Ga0495625_0021144 3300046660 Bacteria 5013
105 Ga0495588_0017108 3300046674 Bacteria 3514
106 Ga0495676_0032217 3300047321 Bacteria 4428
107 Ga0495686_0000072 3300047472 Bacteria 216371
108 Ga0496106_0000003 3300048909 Bacteria 305293
109 Ga0496115_0053655 3300048918 Bacteria 3235
110 Ga0496116_0003966 3300048919 Bacteria 14370
111 Ga0496116_0009430 3300048919 Bacteria 8318
112 Ga0496116_0029100 3300048919 Bacteria 3988
113 Ga0496117_0121331 3300048920 Bacteria 1605
114 Ga0496118_0008549 3300048921 Bacteria 10553
115 Ga0496121_0000357 3300048924 Bacteria 94003
116 Ga0496121_0002578 3300048924 Bacteria 27416
117 Ga0496121_0003099 3300048924 Bacteria 24038
118 Ga0496121_0125519 3300048924 Bacteria 1930
119 Ga0496122_0002056 3300048925 Bacteria 29860
120 Ga0496122_0017486 3300048925 Bacteria 6701
121 Ga0496123_0001705 3300048926 Bacteria 29367
122 Ga0496123_0011333 3300048926 Bacteria 7742
123 Ga0496124_0011400 3300048927 Bacteria 8887
124 Ga0496125_0002290 3300048928 Bacteria 25316
125 Ga0496125_0038708 3300048928 Bacteria 4120
126 Ga0496126_0002972 3300048929 Bacteria 22018
127 Ga0496126_0004749 3300048929 Bacteria 16021
128 Ga0496126_0060943 3300048929 Bacteria 3391
129 Ga0496126_0079969 3300048929 Bacteria 2893
130 Ga0496126_0093192 3300048929 Bacteria 2645
131 Ga0495678_012881 3300049459 Bacteria 3945
132 Ga0501034_0100386 3300049571 Bacteria 2888
133 Ga0501070_0092375 3300049586 Bacteria 2505
134 nmdc:mga06z11_84163_c1 3300050494 Bacteria 1713
135 nmdc:mga08x19_29777_c1 3300050514 Bacteria 3426
136 Ga0500566_0000074 3300053094 Bacteria 48359
137 Ga0500614_000300 3300053123 Bacteria 12752
138 Ga0500618_000118 3300053125 Bacteria 64472
139 Ga0500618_000160 3300053125 Bacteria 56064
140 Ga0500618_000502 3300053125 Bacteria 25031
141 Ga0500618_006444 3300053125 Bacteria 3446
142 Ga0500559_0001726 3300053136 Bacteria 11987
143 Ga0500590_020390 3300053148 Bacteria 3441
144 Ga0500603_000030 3300053150 Bacteria 34154
145 Ga0500622_0000554 3300053156 Bacteria 34240
146 Ga0500630_003168 3300053159 Bacteria 7958
147 Ga0500638_091521 3300053162 Bacteria 1431
148 Ga0500639_000047 3300053163 Bacteria 57835
149 Ga0501084_0000033 3300054114 Bacteria 114778
150 Ga0501082_0053990 3300060353 Bacteria 3464

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053094 Ga0500566_0000074 Ga0500566_0000074_21277_22356 347
2 3300053123 Ga0500614_000300 Ga0500614_000300_8606_9685 347
3 3300053136 Ga0500559_0001726 Ga0500559_0001726_2323_3402 347
4 3300053148 Ga0500590_020390 Ga0500590_020390_972_2051 347
5 3300053150 Ga0500603_000030 Ga0500603_000030_5649_6728 347
6 3300053159 Ga0500630_003168 Ga0500630_003168_1354_2433 347
7 3300053163 Ga0500639_000047 Ga0500639_000047_44208_45287 347
8 3300053162 Ga0500638_091521 Ga0500638_091521_145_1260 359
9 3300037466 Ga0395898_0005331 Ga0395898_0005331_12698_13816 364
10 3300037418 Ga0395900_0040555 Ga0395900_0040555_575_1783 365
11 3300037466 Ga0395898_0018017 Ga0395898_0018017_1329_2537 365
12 3300038443 Ga0395901_0039078 Ga0395901_0039078_2403_3611 365
13 3300048929 Ga0496126_0093192 Ga0496126_0093192_1493_2614 365
14 3300048929 Ga0496126_0002972 Ga0496126_0002972_6856_8007 371
15 3300054114 Ga0501084_0000033 Ga0501084_0000033_94855_96027 376
16 3300060353 Ga0501082_0053990 Ga0501082_0053990_20_1192 376
17 3300039447 Ga0436361_0014043 Ga0436361_0014043_748_2064 379
18 3300005334 Ga0068869_100058812 Ga0068869_1000588121 384
19 3300025942 Ga0207689_10077276 Ga0207689_100772762 384
20 3300048920 Ga0496117_0121331 Ga0496117_0121331_380_1561 384
21 3300031250 Ga0265331_10000763 Ga0265331_1000076318 386
22 3300031251 Ga0265327_10000153 Ga0265327_1000015376 386
23 3300035695 Ga0373927_0011569 Ga0373927_0011569_3906_5255 386
24 3300035725 Ga0373947_0056115 Ga0373947_0056115_684_2033 386
25 3300047321 Ga0495676_0032217 Ga0495676_0032217_2520_3869 386
26 3300048924 Ga0496121_0000357 Ga0496121_0000357_35226_36572 386
27 3300048929 Ga0496126_0004749 Ga0496126_0004749_5887_7233 386
28 3300013296 Ga0157374_10148628 Ga0157374_101486282 387
29 3300002704 JGI25155J39150_1000802 JGI25155J39150_10008021 388
30 3300002705 JGI25156J39149_1003146 JGI25156J39149_10031461 388
31 3300002738 JGI25154J39366_1002123 JGI25154J39366_10021231 388
32 3300002741 JGI25157J39369_1002131 JGI25157J39369_10021314 388
33 3300003758 Ga0055532_1001728 Ga0055532_10017281 388
34 3300003761 Ga0055535_1002954 Ga0055535_10029544 388
35 3300005331 Ga0070670_100115441 Ga0070670_1001154411 388
36 3300005616 Ga0068852_100022073 Ga0068852_1000220731 388
37 3300009011 Ga0105251_10040164 Ga0105251_100401641 388
38 3300009093 Ga0105240_10117570 Ga0105240_101175701 388
39 3300009551 Ga0105238_10054006 Ga0105238_100540062 388
40 3300013308 Ga0157375_10000461 Ga0157375_1000046121 388
41 3300025206 Ga0209435_100082 Ga0209435_10008214 388
42 3300025229 Ga0209147_100122 Ga0209147_100122121 388
43 3300025233 Ga0209437_100081 Ga0209437_10008178 388
44 3300025242 Ga0209258_100866 Ga0209258_1008661 388
45 3300025246 Ga0209646_1000152 Ga0209646_100015214 388
46 3300025250 Ga0209026_1000848 Ga0209026_10008481 388
47 3300025256 Ga0209759_1000193 Ga0209759_100019314 388
48 3300025272 Ga0209455_1004667 Ga0209455_10046673 388
49 3300025913 Ga0207695_10002294 Ga0207695_1000229423 388
50 3300025924 Ga0207694_10023584 Ga0207694_100235842 388
51 3300026142 Ga0207698_10006261 Ga0207698_100062614 388
52 3300046524 Ga0495648_0024432 Ga0495648_0024432_21_1271 388
53 3300046660 Ga0495625_0021144 Ga0495625_0021144_3469_4803 388
54 3300048919 Ga0496116_0003966 Ga0496116_0003966_6489_7814 388
55 3300048924 Ga0496121_0125519 Ga0496121_0125519_544_1869 388
56 3300048925 Ga0496122_0002056 Ga0496122_0002056_12093_13418 388
57 3300048926 Ga0496123_0001705 Ga0496123_0001705_21149_22474 388
58 3300048928 Ga0496125_0038708 Ga0496125_0038708_256_1581 388
59 3300014497 Ga0182008_10014728 Ga0182008_100147283 389
60 3300003320 rootH2_10024670 rootH2_100246706 391
61 3300005339 Ga0070660_100179189 Ga0070660_1001791892 391
62 3300005435 Ga0070714_100003726 Ga0070714_10000372610 391
63 3300005436 Ga0070713_100035488 Ga0070713_1000354882 391
64 3300005564 Ga0070664_100030446 Ga0070664_1000304463 391
65 3300005577 Ga0068857_100039424 Ga0068857_1000394241 391
66 3300006028 Ga0070717_10217564 Ga0070717_102175642 391
67 3300006175 Ga0070712_100063799 Ga0070712_1000637992 391
68 3300013105 Ga0157369_10160412 Ga0157369_101604122 391
69 3300025916 Ga0207663_10041810 Ga0207663_100418102 391
70 3300025919 Ga0207657_10008383 Ga0207657_1000838310 391
71 3300025928 Ga0207700_10003586 Ga0207700_100035864 391
72 3300025929 Ga0207664_10007532 Ga0207664_100075325 391
73 3300025945 Ga0207679_10019107 Ga0207679_100191072 391
74 3300025949 Ga0207667_10087857 Ga0207667_100878572 391
75 3300047472 Ga0495686_0000072 Ga0495686_0000072_81315_82673 393
76 3300006914 Ga0075436_100040116 Ga0075436_1000401162 395
77 3300048918 Ga0496115_0053655 Ga0496115_0053655_1097_2440 395
78 3300048929 Ga0496126_0079969 Ga0496126_0079969_1509_2852 395
79 3300050514 nmdc:mga08x19_29777_c1 nmdc:mga08x19_29777_c1_1495_2727 395
80 3300010159 Ga0099796_10002784 Ga0099796_100027842 396
81 3300031730 Ga0307516_10000455 Ga0307516_1000045514 396
82 iso_pu_bacteria 2548876994 2550693358 400
83 iso_pu_bacteria 2818991445 2819595536 401
84 iso_pu_bacteria 2884811622 2884812325 401
85 iso_pu_bacteria 2884836552 2884836689 401
86 iso_pu_bacteria 2884852848 2884852981 401
87 iso_pu_bacteria 2896154374 2896155902 401
88 3300005435 Ga0070714_100001071 Ga0070714_1000010719 403
89 3300005614 Ga0068856_100019750 Ga0068856_1000197506 403
90 3300006028 Ga0070717_10006264 Ga0070717_100062647 403
91 3300009093 Ga0105240_10024207 Ga0105240_100242072 403
92 3300039450 Ga0436363_1384519 Ga0436363_1384519_1706_3046 403
93 3300048928 Ga0496125_0002290 Ga0496125_0002290_11769_13094 403
94 iso_pu_bacteria 2879099564 2879101591 403
95 3300037312 Ga0395899_0004999 Ga0395899_0004999_9006_10283 405
96 3300037418 Ga0395900_0018152 Ga0395900_0018152_204_1481 405
97 3300038443 Ga0395901_0012499 Ga0395901_0012499_3692_4969 405
98 3300049586 Ga0501070_0092375 Ga0501070_0092375_1130_2389 405
99 3300025297 Ga0209758_1042778 Ga0209758_10427782 406
100 3300046460 Ga0495638_0000468 Ga0495638_0000468_6384_7715 406
101 3300046660 Ga0495625_0008994 Ga0495625_0008994_4036_5367 406
102 3300003320 rootH2_10204608 rootH2_102046082 407
103 3300005439 Ga0070711_100222282 Ga0070711_1002222821 407
104 3300028573 Ga0265334_10037029 Ga0265334_100370292 407
105 3300028800 Ga0265338_10034215 Ga0265338_100342154 407
106 3300031249 Ga0265339_10106260 Ga0265339_101062601 407
107 3300031712 Ga0265342_10011385 Ga0265342_100113853 407
108 3300037312 Ga0395899_0089488 Ga0395899_0089488_659_1957 407
109 3300037312 Ga0395899_0106658 Ga0395899_0106658_227_1564 407
110 3300037418 Ga0395900_0002116 Ga0395900_0002116_4043_5335 407
111 3300037418 Ga0395900_0119249 Ga0395900_0119249_58_1413 407
112 3300037466 Ga0395898_0160785 Ga0395898_0160785_649_1947 407
113 3300038443 Ga0395901_0292705 Ga0395901_0292705_31_1329 407
114 3300039447 Ga0436361_0576321 Ga0436361_0576321_8457_9770 407
115 3300048924 Ga0496121_0002578 Ga0496121_0002578_15522_16886 407
116 iso_pu_bacteria 2513237161 2514014822 407
117 3300013102 Ga0157371_10000101 Ga0157371_1000010134 408
118 3300048921 Ga0496118_0008549 Ga0496118_0008549_5660_6970 408
119 3300053156 Ga0500622_0000554 Ga0500622_0000554_6134_7435 408
120 iso_pu_bacteria 3000017691 3000020228 408
121 3300048909 Ga0496106_0000003 Ga0496106_0000003_141969_143258 409
122 3300053125 Ga0500618_000118 Ga0500618_000118_16826_18142 409
123 3300003323 rootH1_10075407 rootH1_100754072 411
124 3300045049 Ga0466959_0035763 Ga0466959_0035763_1688_2977 414
125 iso_pu_bacteria 8018150411 8018154615 414
126 3300006871 Ga0075434_100162284 Ga0075434_1001622842 418
127 3300048929 Ga0496126_0060943 Ga0496126_0060943_1003_2307 418
128 iso_pu_bacteria 2818991461 2819686789 418
129 iso_pu_bacteria 8001845381 8001847895 418
130 3300049459 Ga0495678_012881 Ga0495678_012881_2396_3793 420
131 iso_pu_bacteria 2510917030 2511197982 420
132 iso_pu_bacteria 2724679232 2725950872 420
133 3300005983 Ga0081540_1039783 Ga0081540_10397832 421
134 3300010159 Ga0099796_10000478 Ga0099796_100004785 421
135 3300031731 Ga0307405_10000335 Ga0307405_100003357 421
136 3300046501 Ga0495607_0040755 Ga0495607_0040755_16_1350 422
137 3300053125 Ga0500618_000160 Ga0500618_000160_46488_47837 422
138 iso_pu_bacteria 2738541293 2738805067 422
139 3300048919 Ga0496116_0029100 Ga0496116_0029100_1883_3283 423
140 3300049571 Ga0501034_0100386 Ga0501034_0100386_522_1940 423
141 3300048919 Ga0496116_0009430 Ga0496116_0009430_6511_7857 424
142 3300048924 Ga0496121_0003099 Ga0496121_0003099_19738_21084 424
143 3300048925 Ga0496122_0017486 Ga0496122_0017486_1007_2353 424
144 3300048926 Ga0496123_0011333 Ga0496123_0011333_1147_2493 424
145 3300048927 Ga0496124_0011400 Ga0496124_0011400_2657_4003 424
146 3300005983 Ga0081540_1009263 Ga0081540_10092637 425
147 3300046507 Ga0495606_0003881 Ga0495606_0003881_6512_7855 425
148 3300046512 Ga0495610_0052267 Ga0495610_0052267_387_1736 425
149 3300046520 Ga0495637_0004492 Ga0495637_0004492_63_1412 425
150 3300046525 Ga0495663_0015630 Ga0495663_0015630_303_1652 425
151 3300046648 Ga0495611_0058952 Ga0495611_0058952_171_1520 425
152 3300046674 Ga0495588_0017108 Ga0495588_0017108_1772_3121 425
153 3300053125 Ga0500618_006444 Ga0500618_006444_605_1954 425
154 3300006178 Ga0075367_10089913 Ga0075367_100899132 426
155 3300046530 Ga0495654_0000045 Ga0495654_0000045_54077_55423 426
156 3300050494 nmdc:mga06z11_84163_c1 nmdc:mga06z11_84163_c1_189_1601 426
157 iso_pu_bacteria 2904584206 2904588585 426
158 iso_pu_bacteria 2904589729 2904594341 426
159 3300002704 JGI25155J39150_1000027 JGI25155J39150_1000027110 427
160 3300002705 JGI25156J39149_1000008 JGI25156J39149_100000816 427
161 3300002738 JGI25154J39366_1000050 JGI25154J39366_1000050110 427
162 3300002741 JGI25157J39369_1000028 JGI25157J39369_100002816 427
163 3300025206 Ga0209435_100020 Ga0209435_10002015 427
164 3300025246 Ga0209646_1000070 Ga0209646_100007015 427
165 3300025250 Ga0209026_1000057 Ga0209026_1000057207 427
166 3300025256 Ga0209759_1000047 Ga0209759_1000047207 427
167 3300053125 Ga0500618_000502 Ga0500618_000502_13826_15220 427

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00034

Cytochrom_C

Cytochrome c

343

431

0.89

PF00034

Cytochrom_C

Cytochrome c

60

159

0.79

PF13442

Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

341

426

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
8gy2-assembly1.cif.gz_B cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans 0.9106 28 423
8jek-assembly1.cif.gz_C cryo-em structure of k-ferricyanide oxidized membrane-bound fructose dehydrogenase from gluconobacter japonicus 0.8574 33 412
8gy2-assembly1.cif.gz_B cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans 0.8444 28 423
8hdd-assembly1.cif.gz_B complex structure of catalytic, small, and a partial electron transfer subunits from burkholderia cepacia fad glucose dehydrogenase 0.829 299 411
7w2j-assembly1.cif.gz_C cryo-em structure of membrane-bound fructose dehydrogenase from gluconobacter japonicus 0.8116 34 424
ID Description Score Start End Superfamily
2d0wB00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.7891 309 392 1.10.760.10
1r0qA00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.772 310 412 1.10.760.10
5oboA03 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.7251 295 412 1.10.760.10
2zooA02 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.7217 288 411 1.10.760.10
4wqaA02 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.6811 308 393 1.10.760.10
ID Description Score Start End GO Terms
AF-B1TGN3-F1-model_v4 Gluconate 2-dehydrogenase (Acceptor) (EC 1.1.99.3) 0.9637 153 412 GO:0009055
GO:0020037
GO:0033717
GO:0046872
AF-A0A427G8J6-F1-model_v4 Cytochrome c 0.9452 28 411 GO:0005506
GO:0005886
GO:0009055
GO:0016614
GO:0020037
AF-F0G547-F1-model_v4 Gluconate 2-dehydrogenase (Acceptor) 0.9437 29 265 GO:0009055
GO:0020037
GO:0046872
AF-A0A6P2FGC0-F1-model_v4 Alcohol dehydrogenase cytochrome c subunit 0.9427 61 411 GO:0005506
GO:0005886
GO:0009055
GO:0016614
GO:0020037
AF-M9MJ51-F1-model_v4 deleted 0.9412 28 411

Feature Viewer

pLDDT pTM Quality
85.34 0.88 High
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Predicted Structure (AlphaFold2)

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