F249460

General Info

Members Datasets Scaffolds Average Seq Length
166 131 332 543

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2935684952|2935690944
Length 573
Sequence ALHQKIITSASFPVIKRGEKLVMKNTLRGADVVAQSLQRLGCKRIFTLSGNHIMSVFDAVLETDIELVHVRHEAAAVHMADGWGRLTGTPGIAMVTGGPGHVNAVGALFAARAAESPMVLLSGHAATWELGRGGFQELRQAEMAAPVTKASWTATSTATLGQDIARAIRIAREGRPGPVHISVPSDLLDEVIDASAISWPQVQAEVAAPDLPPAIADSVIAAIHSARRPIIFAPPQLSNAGGRALLSDLEAATNAPVVILESPRGLADAGLGAFQDLITKVDLVVLLGKALDFTTRWAAAPDYRSGVRLIAIDPEAALAERAMKEAGDRLIVGCVADVKLAARTIIARAAFSEPRGKEWLREARAAIDNRPAEWASVVSSKPGRLHPAELLRTLRPYVERCDDAVLVCDGGEIGQWAQSILPLRQRMINGVSGSIGSSLPLALSARYFEQNAPIFVVLGDGTIGFHLAEFETAVRRSLPFVAIVGNDACWNAESQIQFRTYGADRMHGCDLTPARYDLVVAALGGHGEFVERMEDLAAAIERALESGKPACINVMIESVGAPNIRLTENDRLR

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
16 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
20 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
36 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
37 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
54 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
55 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
56 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
57 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
58 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
59 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
60 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
61 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
62 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
63 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
64 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
65 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
66 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
69 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
70 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
71 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
72 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
73 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
74 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
75 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
76 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
77 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
78 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
79 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
80 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
81 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
82 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
83 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
84 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
85 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
86 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
87 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
90 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
91 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
92 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
93 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
94 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
95 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
98 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
99 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
107 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
110 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
111 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
112 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
113 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
114 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
115 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
116 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
117 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
118 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
119 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
120 2935684952 Bradyrhizobium sp. LA3.X Isolate Nodule
121 2824600985 Bradyrhizobium sp.HAMBI 2135 Isolate Unclassified
122 2824609381 Bradyrhizobium sp. HAMBI 2134 Isolate Unclassified
123 2824653114 Bradyrhizobium sp. HAMBI 2142 Isolate Unclassified
124 2888419890 Bradyrhizobium sp. 1(2017) 63S1MB Isolate Unclassified
125 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
126 2935713505 Bradyrhizobium sp. LA6.12 Isolate Nodule
127 2935722832 Bradyrhizobium sp. LA6.3 Isolate Nodule
128 2935732158 Bradyrhizobium sp. LA6.4 Isolate Nodule
129 2935741537 Bradyrhizobium sp. LA6.7 Isolate Nodule
130 2935750917 Bradyrhizobium sp. LA6.8 Isolate Nodule
131 2940556831 Bradyrhizobium sp. LA8.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.77
Metatranscriptomes 0
Isolates 7.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.81
Nodule 4.22
Rhizoplane 15.66
Rhizosphere 73.49
Stem 0
Stem Tuber 0
Unclassified 6.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10003217 3300003203 Bacteria 7681
2 JGI25153J46596_10001582 3300003215 Bacteria 13486
3 Ga0070689_100033242 3300005340 Bacteria 3928
4 Ga0070668_100008344 3300005347 Bacteria 7692
5 Ga0070668_100050385 3300005347 Bacteria 3206
6 Ga0070675_100114502 3300005354 Bacteria 2285
7 Ga0070688_100071927 3300005365 Bacteria 2215
8 Ga0070714_100036959 3300005435 Bacteria 4100
9 Ga0070714_100046586 3300005435 Bacteria 3679
10 Ga0070713_100031881 3300005436 Bacteria 4203
11 Ga0070711_100051626 3300005439 Unclassified 2825
12 Ga0070698_100042337 3300005471 Bacteria 4671
13 Ga0070679_100040913 3300005530 Bacteria 4612
14 Ga0068856_100078938 3300005614 Bacteria 3263
15 Ga0068859_100138712 3300005617 Bacteria 2505
16 Ga0068864_100013086 3300005618 Bacteria 6873
17 Ga0068864_100055449 3300005618 Bacteria 3422
18 Ga0068860_100109217 3300005843 Bacteria 2644
19 Ga0081538_10006032 3300005981 Bacteria 10770
20 Ga0081539_10000391 3300005985 Bacteria 94496
21 Ga0070717_10026867 3300006028 Bacteria 4597
22 Ga0070715_10011291 3300006163 Bacteria 3213
23 Ga0070712_100002030 3300006175 Bacteria 12405
24 Ga0075428_100001027 3300006844 Bacteria 29563
25 Ga0075428_100028509 3300006844 Bacteria 6177
26 Ga0075428_100237568 3300006844 Bacteria 1966
27 Ga0075430_100087757 3300006846 Unclassified 2603
28 Ga0075431_100000017 3300006847 Bacteria 84171
29 Ga0075431_100134849 3300006847 Bacteria 2545
30 Ga0075429_100038754 3300006880 Bacteria 4149
31 Ga0075429_100079291 3300006880 Bacteria 2862
32 Ga0097620_100138711 3300006931 Bacteria 2505
33 Ga0075435_100093855 3300007076 Bacteria 2480
34 Ga0111539_10000735 3300009094 Bacteria 42613
35 Ga0111539_10007616 3300009094 Bacteria 13837
36 Ga0111539_10075629 3300009094 Bacteria 3967
37 Ga0105247_10075211 3300009101 Bacteria 2119
38 Ga0114129_10000025 3300009147 Bacteria 116480
39 Ga0114129_10067567 3300009147 Bacteria 4985
40 Ga0105248_10028103 3300009177 Bacteria 6264
41 Ga0105248_10225245 3300009177 Bacteria 2111
42 Ga0105238_10082744 3300009551 Bacteria 3199
43 Ga0157375_10049922 3300013308 Bacteria 4102
44 Ga0163163_10113843 3300014325 Bacteria 2735
45 Ga0157380_10055778 3300014326 Bacteria 3140
46 Ga0224572_1000107 3300024225 Bacteria 6414
47 Ga0209758_1000274 3300025297 Bacteria 102644
48 Ga0207682_10008902 3300025893 Bacteria 3971
49 Ga0207692_10115211 3300025898 Unclassified 1497
50 Ga0207710_10016345 3300025900 Bacteria 3139
51 Ga0207645_10018638 3300025907 Bacteria 4560
52 Ga0207693_10037710 3300025915 Bacteria 3809
53 Ga0207663_10029639 3300025916 Unclassified 3217
54 Ga0207662_10006881 3300025918 Bacteria 6161
55 Ga0207659_10070452 3300025926 Bacteria 2550
56 Ga0207664_10160868 3300025929 Unclassified 1915
57 Ga0207670_10003938 3300025936 Bacteria 7924
58 Ga0207670_10022708 3300025936 Bacteria 3893
59 Ga0207669_10019720 3300025937 Bacteria 3519
60 Ga0207691_10006228 3300025940 Bacteria 11523
61 Ga0207711_10067440 3300025941 Bacteria 3097
62 Ga0207668_10026986 3300025972 Bacteria 3737
63 Ga0207676_10049323 3300026095 Bacteria 3274
64 Ga0207683_10001331 3300026121 Bacteria 22269
65 Ga0207428_10001198 3300027907 Bacteria 27809
66 Ga0207428_10049009 3300027907 Bacteria 3386
67 Ga0265338_10053746 3300028800 Bacteria 3599
68 Ga0265325_10008473 3300031241 Bacteria 6065
69 Ga0265325_10032271 3300031241 Unclassified 2797
70 Ga0265325_10034483 3300031241 Bacteria 2691
71 Ga0265339_10000033 3300031249 Bacteria 130595
72 Ga0265313_10000049 3300031595 Bacteria 111617
73 Ga0316575_10006567 3300031665 Bacteria 4190
74 Ga0265342_10017386 3300031712 Bacteria 4679
75 Ga0316578_10004329 3300031728 Bacteria 6682
76 Ga0316583_10005429 3300032133 Bacteria 4574
77 Ga0373931_0009452 3300035691 Bacteria 4663
78 Ga0373927_0037279 3300035695 Bacteria 3161
79 Ga0373937_0003278 3300036401 Bacteria 13574
80 Ga0316582_0033690 3300036647 Bacteria 3148
81 Ga0373925_0022560 3300037068 Bacteria 4593
82 Ga0373925_0024606 3300037068 Bacteria 4397
83 Ga0436365_0687883 3300039437 Bacteria 6665
84 Ga0495651_0025721 3300046462 Bacteria 4584
85 Ga0495651_0128675 3300046462 Bacteria 1851
86 Ga0495653_0058991 3300046463 Bacteria 2915
87 Ga0495664_0015840 3300046477 Bacteria 4289
88 Ga0495596_0045128 3300046500 Bacteria 1733
89 Ga0495608_0030298 3300046511 Bacteria 3664
90 Ga0495608_0050257 3300046511 Bacteria 2766
91 Ga0495648_0010907 3300046524 Bacteria 6892
92 Ga0495640_0128984 3300046533 Bacteria 1638
93 Ga0495609_0014248 3300046538 Bacteria 3742
94 Ga0495645_0034879 3300046543 Bacteria 3668
95 Ga0495667_0018821 3300046559 Bacteria 4663
96 Ga0495599_0064076 3300046678 Bacteria 2296
97 Ga0495604_0009129 3300047317 Bacteria 7847
98 Ga0495674_0053244 3300047319 Bacteria 3559
99 Ga0495675_0021932 3300047444 Bacteria 4068
100 Ga0495677_0000243 3300047445 Bacteria 24139
101 Ga0495684_0139654 3300047471 Bacteria 1817
102 Ga0495602_0016503 3300048088 Bacteria 7425
103 Ga0495626_0006017 3300048091 Bacteria 6975
104 Ga0496100_0001832 3300048903 Bacteria 10625
105 Ga0496100_0013272 3300048903 Bacteria 4745
106 Ga0496101_0007091 3300048904 Bacteria 7246
107 Ga0496101_0011252 3300048904 Bacteria 5928
108 Ga0496102_0052980 3300048905 Bacteria 3698
109 Ga0496103_0007563 3300048906 Bacteria 6475
110 Ga0496104_0013884 3300048907 Bacteria 7266
111 Ga0496104_0016011 3300048907 Bacteria 6808
112 Ga0496105_0035563 3300048908 Bacteria 4099
113 Ga0496106_0001471 3300048909 Bacteria 17692
114 Ga0496106_0012672 3300048909 Bacteria 6229
115 Ga0496107_0029001 3300048910 Bacteria 3935
116 Ga0496108_0008578 3300048911 Bacteria 8288
117 Ga0496108_0022315 3300048911 Bacteria 5204
118 Ga0496108_0033284 3300048911 Bacteria 4282
119 Ga0496109_0036127 3300048912 Bacteria 4459
120 Ga0496109_0077529 3300048912 Bacteria 3058
121 Ga0496110_0012063 3300048913 Bacteria 7100
122 Ga0496110_0020732 3300048913 Bacteria 5550
123 Ga0496110_0029153 3300048913 Bacteria 4746
124 Ga0496111_0010288 3300048914 Bacteria 6267
125 Ga0496111_0074919 3300048914 Bacteria 2466
126 Ga0496112_0014226 3300048915 Bacteria 7373
127 Ga0496112_0130471 3300048915 Bacteria 2484
128 Ga0496114_0040323 3300048917 Bacteria 3865
129 Ga0496115_0023792 3300048918 Bacteria 4756
130 Ga0496119_0061169 3300048922 Unclassified 2251
131 Ga0496120_0062501 3300048923 Unclassified 2075
132 Ga0496121_0058494 3300048924 Bacteria 3186
133 Ga0501034_0061528 3300049571 Unclassified 3770
134 Ga0501039_0052852 3300049575 Bacteria 3143
135 Ga0501072_0004994 3300049588 Bacteria 10092
136 Ga0501077_0010732 3300049593 Bacteria 5705
137 Ga0501077_0028208 3300049593 Bacteria 3567
138 Ga0501080_0063321 3300049742 Bacteria 3442
139 Ga0501081_0041983 3300049743 Bacteria 3134
140 Ga0501083_0036152 3300049744 Bacteria 3370
141 nmdc:mga05p37_95_c1 3300050507 Bacteria 79379
142 nmdc:mga09592_1569_c1 3300050508 Bacteria 18390
143 nmdc:mga09592_66066_c1 3300050508 Bacteria 3065
144 nmdc:mga0qj67_93505_c1 3300050509 Unclassified 2418
145 nmdc:mga06r32_108702_c1 3300050510 Bacteria 2727
146 nmdc:mga06r32_12298_c1 3300050510 Bacteria 7719
147 nmdc:mga06r32_3453_c1 3300050510 Bacteria 14113
148 nmdc:mga08y16_27300_c1 3300050511 Bacteria 6014
149 nmdc:mga08y16_48_c1 3300050511 Bacteria 111306
150 Ga0495601_0001400 3300053077 Bacteria 13275
151 Ga0500607_014423 3300053121 Bacteria 4578
152 Ga0501084_0002530 3300054114 Bacteria 14730
153 Ga0501082_0000306 3300060353 Bacteria 43493
154 Ga0501082_0012721 3300060353 Bacteria 7233
155 2935690944 2935684952 Bacteria 9590419
156 2824603111 2824600985 Bacteria 8488197
157 2824615676 2824609381 Bacteria 8672835
158 2824659621 2824653114 Bacteria 8493680
159 2888419942 2888419890 Bacteria 7857137
160 2894775015 2894772417 Bacteria 5305674
161 2935718325 2935713505 Bacteria 9608509
162 2935727695 2935722832 Bacteria 9608746
163 2935736398 2935732158 Bacteria 9706831
164 2935745778 2935741537 Bacteria 9707219
165 2935756159 2935750917 Bacteria 9590372
166 2940561866 2940556831 Bacteria 9590747
167 JGI25406J46586_10003217
168 JGI25153J46596_10001582
169 Ga0070689_100033242
170 Ga0070668_100008344
171 Ga0070668_100050385
172 Ga0070675_100114502
173 Ga0070688_100071927
174 Ga0070714_100036959
175 Ga0070714_100046586
176 Ga0070713_100031881
177 Ga0070711_100051626
178 Ga0070698_100042337
179 Ga0070679_100040913
180 Ga0068856_100078938
181 Ga0068859_100138712
182 Ga0068864_100013086
183 Ga0068864_100055449
184 Ga0068860_100109217
185 Ga0081538_10006032
186 Ga0081539_10000391
187 Ga0070717_10026867
188 Ga0070715_10011291
189 Ga0070712_100002030
190 Ga0075428_100001027
191 Ga0075428_100028509
192 Ga0075428_100237568
193 Ga0075430_100087757
194 Ga0075431_100000017
195 Ga0075431_100134849
196 Ga0075429_100038754
197 Ga0075429_100079291
198 Ga0097620_100138711
199 Ga0075435_100093855
200 Ga0111539_10000735
201 Ga0111539_10007616
202 Ga0111539_10075629
203 Ga0105247_10075211
204 Ga0114129_10000025
205 Ga0114129_10067567
206 Ga0105248_10028103
207 Ga0105248_10225245
208 Ga0105238_10082744
209 Ga0157375_10049922
210 Ga0163163_10113843
211 Ga0157380_10055778
212 Ga0224572_1000107
213 Ga0209758_1000274
214 Ga0207682_10008902
215 Ga0207692_10115211
216 Ga0207710_10016345
217 Ga0207645_10018638
218 Ga0207693_10037710
219 Ga0207663_10029639
220 Ga0207662_10006881
221 Ga0207659_10070452
222 Ga0207664_10160868
223 Ga0207670_10003938
224 Ga0207670_10022708
225 Ga0207669_10019720
226 Ga0207691_10006228
227 Ga0207711_10067440
228 Ga0207668_10026986
229 Ga0207676_10049323
230 Ga0207683_10001331
231 Ga0207428_10001198
232 Ga0207428_10049009
233 Ga0265338_10053746
234 Ga0265325_10008473
235 Ga0265325_10032271
236 Ga0265325_10034483
237 Ga0265339_10000033
238 Ga0265313_10000049
239 Ga0316575_10006567
240 Ga0265342_10017386
241 Ga0316578_10004329
242 Ga0316583_10005429
243 Ga0373931_0009452
244 Ga0373927_0037279
245 Ga0373937_0003278
246 Ga0316582_0033690
247 Ga0373925_0022560
248 Ga0373925_0024606
249 Ga0436365_0687883
250 Ga0495651_0025721
251 Ga0495651_0128675
252 Ga0495653_0058991
253 Ga0495664_0015840
254 Ga0495596_0045128
255 Ga0495608_0030298
256 Ga0495608_0050257
257 Ga0495648_0010907
258 Ga0495640_0128984
259 Ga0495609_0014248
260 Ga0495645_0034879
261 Ga0495667_0018821
262 Ga0495599_0064076
263 Ga0495604_0009129
264 Ga0495674_0053244
265 Ga0495675_0021932
266 Ga0495677_0000243
267 Ga0495684_0139654
268 Ga0495602_0016503
269 Ga0495626_0006017
270 Ga0496100_0001832
271 Ga0496100_0013272
272 Ga0496101_0007091
273 Ga0496101_0011252
274 Ga0496102_0052980
275 Ga0496103_0007563
276 Ga0496104_0013884
277 Ga0496104_0016011
278 Ga0496105_0035563
279 Ga0496106_0001471
280 Ga0496106_0012672
281 Ga0496107_0029001
282 Ga0496108_0008578
283 Ga0496108_0022315
284 Ga0496108_0033284
285 Ga0496109_0036127
286 Ga0496109_0077529
287 Ga0496110_0012063
288 Ga0496110_0020732
289 Ga0496110_0029153
290 Ga0496111_0010288
291 Ga0496111_0074919
292 Ga0496112_0014226
293 Ga0496112_0130471
294 Ga0496114_0040323
295 Ga0496115_0023792
296 Ga0496119_0061169
297 Ga0496120_0062501
298 Ga0496121_0058494
299 Ga0501034_0061528
300 Ga0501039_0052852
301 Ga0501072_0004994
302 Ga0501077_0010732
303 Ga0501077_0028208
304 Ga0501080_0063321
305 Ga0501081_0041983
306 Ga0501083_0036152
307 nmdc:mga05p37_95_c1
308 nmdc:mga09592_1569_c1
309 nmdc:mga09592_66066_c1
310 nmdc:mga0qj67_93505_c1
311 nmdc:mga06r32_108702_c1
312 nmdc:mga06r32_12298_c1
313 nmdc:mga06r32_3453_c1
314 nmdc:mga08y16_27300_c1
315 nmdc:mga08y16_48_c1
316 Ga0495601_0001400
317 Ga0500607_014423
318 Ga0501084_0002530
319 Ga0501082_0000306
320 Ga0501082_0012721
321 2935690944
322 2824603111
323 2824615676
324 2824659621
325 2888419942
326 2894775015
327 2935718325
328 2935727695
329 2935736398
330 2935745778
331 2935756159
332 2940561866

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02776

TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

27

143

0.98

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

409

554

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4qpz-assembly2.cif.gz_F crystal structure of the formolase fls_v2 in space group p 21 0.8755 6 535
3iae-assembly1.cif.gz_B structure of benzaldehyde lyase a28s mutant with benzoylphosphonate 0.8679 6 535
4qq8-assembly1.cif.gz_B crystal structure of the formolase fls in space group p 43 21 2 0.8654 6 535
7pt3-assembly1.cif.gz_A actinobacterial 2-hydroxyacyl-coa lyase (achacl) mutant e493a structure in complex with substrate 2-hib-coa and inactive cofactor 3-deaza-thdp 0.8652 5 534
8beo-assembly1.cif.gz_A crystal structure of e. coli glyoxylate carboligase mutant i393a with map 0.8643 6 534
ID Description Score Start End Superfamily
af_Q9UJ83_3_186_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9405 2 175 3.40.50.970
af_Q54DA9_1_176_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9401 8 170 3.40.50.970
af_P0DP89_1_170_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9346 8 166 3.40.50.970
af_P9WG39_359_545_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9284 358 535 3.40.50.970
af_Q9Y7M1_1_173_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9212 6 177 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A2Z5G370-F1-model_v4 Acetolactate synthase large subunit 0.9816 5 541 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A6J4LVM4-F1-model_v4 Acetolactate synthase large subunit homolog 0.9695 367 541 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A2Z5G370-F1-model_v4 Acetolactate synthase large subunit 0.9621 5 541 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A3N5IKP5-F1-model_v4 Acetolactate synthase large subunit (EC 2.2.1.6) 0.9619 6 162 GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A434SL68-F1-model_v4 Thiamine pyrophosphate-binding protein 0.9601 6 168 GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660

Map