F248419

General Info

Members Datasets Scaffolds Average Seq Length
166 124 332 217

Family's Representative Sequence

Representative Sequence 3300014326|Ga0157380_10029379|Ga0157380_100293794
Length 246
Sequence VDDHAVVRDALRALLETEDDIVVAGEAGDGRSAVRMARELLPDVVVMDIAMPLLNGIEATRQILKERPATRVLLVSAHSEDAYIEQVVGLRIAGYMTKQDSALVLEKAIREAYKGNTFFSACISDRFREIQQHSLCGAGARSHHVASILTPREVEIFQLIAEGKANKQSASELGISIKTVEKHRHELTQRLGVHSIAELTRYAVATGVIESGLCCEGDTSQPTSRCHFIEERPSSTSAHRDREQRR

Samples

Sample ID Description Type Environment
1 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
10 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
14 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
15 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
16 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
17 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
18 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
25 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
26 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027617 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes) (version 2) Metagenome Rhizosphere
37 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
40 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
43 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
44 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
45 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
46 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
47 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
52 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
53 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
54 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
55 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
56 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
57 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
58 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
63 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
64 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
65 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
66 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
67 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
73 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
74 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
75 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
78 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
82 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
83 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
84 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
85 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
86 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
87 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
88 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
89 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
96 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
97 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
98 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
99 3300049666 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A4_B_2_control Metagenome Rhizosphere
100 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
101 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
102 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
103 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
104 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
107 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
108 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
109 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
112 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
113 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
114 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
115 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
116 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
119 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
120 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
121 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
122 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
123 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
124 2891633521 Azoarcus rhizosphaerae CC-YHH848 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.8
Metatranscriptomes 0.6
Isolates 0.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.65
Nodule 0
Rhizoplane 0
Rhizosphere 85.54
Stem 0
Stem Tuber 0
Unclassified 12.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157380_10029379 3300014326 Bacteria 4202
2 Ga0070658_10069713 3300005327 Bacteria 2877
3 Ga0070670_100056098 3300005331 Bacteria 3381
4 Ga0070670_100107416 3300005331 Bacteria 2405
5 Ga0070680_100198550 3300005336 Bacteria 1691
6 Ga0070675_100113814 3300005354 Unclassified 2292
7 Ga0070674_100063113 3300005356 Bacteria 2591
8 Ga0070678_100080525 3300005456 Bacteria 2466
9 Ga0070681_10008872 3300005458 Bacteria 9880
10 Ga0070685_10571154 3300005466 Unclassified 810
11 Ga0070672_100120316 3300005543 Bacteria 2148
12 Ga0070665_100001313 3300005548 Bacteria 29690
13 Ga0070665_100409618 3300005548 Bacteria 1364
14 Ga0081455_10000573 3300005937 Bacteria 47963
15 Ga0075365_10334449 3300006038 Bacteria 1067
16 Ga0075368_10058562 3300006042 Unclassified 1540
17 Ga0075364_10109586 3300006051 Bacteria 1841
18 Ga0075362_10189759 3300006177 Bacteria 998
19 Ga0075367_10028742 3300006178 Bacteria 3174
20 Ga0075366_10182576 3300006195 Bacteria 1274
21 Ga0075430_100015642 3300006846 Bacteria 6462
22 Ga0075433_10493000 3300006852 Bacteria 1079
23 Ga0075434_100035605 3300006871 Bacteria 4922
24 Ga0075436_100246934 3300006914 Bacteria 1270
25 Ga0111539_10046195 3300009094 Bacteria 5210
26 Ga0105241_10095971 3300009174 Bacteria 2348
27 Ga0105242_10399874 3300009176 Bacteria 1282
28 Ga0207680_10292113 3300025903 Bacteria 1135
29 Ga0207707_10023138 3300025912 Bacteria 5436
30 Ga0207660_10139604 3300025917 Bacteria 1852
31 Ga0207652_10126932 3300025921 Bacteria 2273
32 Ga0207650_10136520 3300025925 Unclassified 1924
33 Ga0207659_10096845 3300025926 Unclassified 2215
34 Ga0207686_10439059 3300025934 Bacteria 1002
35 Ga0207691_10002052 3300025940 Bacteria 19689
36 Ga0207651_10216321 3300025960 Bacteria 1546
37 Ga0207683_10090239 3300026121 Bacteria 2729
38 Ga0210002_1002415 3300027617 Unclassified 2694
39 Ga0209971_1007075 3300027682 Unclassified 2661
40 Ga0209966_1030690 3300027695 Bacteria 1087
41 Ga0209813_10078587 3300027866 Bacteria 1086
42 Ga0209974_10001547 3300027876 Bacteria 8354
43 Ga0268266_10003398 3300028379 Bacteria 15936
44 Ga0268266_10499707 3300028379 Unclassified 1161
45 Ga0265322_10000090 3300028654 Bacteria 42278
46 Ga0265338_10093066 3300028800 Bacteria 2485
47 Ga0265330_10000001 3300031235 Bacteria 499696
48 Ga0265332_10000007 3300031238 Bacteria 319429
49 Ga0265320_10137996 3300031240 Bacteria 1105
50 Ga0265325_10021332 3300031241 Bacteria 3559
51 Ga0265339_10009470 3300031249 Bacteria 6123
52 Ga0265331_10017281 3300031250 Bacteria 3768
53 Ga0265331_10018698 3300031250 Bacteria 3587
54 Ga0265331_10069191 3300031250 Bacteria 1654
55 Ga0265331_10071153 3300031250 Bacteria 1627
56 Ga0265331_10072995 3300031250 Bacteria 1603
57 Ga0265331_10196772 3300031250 Bacteria 908
58 Ga0265327_10009304 3300031251 Bacteria 7113
59 Ga0265327_10021211 3300031251 Bacteria 3926
60 Ga0265327_10082505 3300031251 Bacteria 1584
61 Ga0265327_10128137 3300031251 Unclassified 1196
62 Ga0265327_10187048 3300031251 Bacteria 944
63 Ga0265316_10000004 3300031344 Bacteria 310897
64 Ga0265316_10043981 3300031344 Unclassified 3554
65 Ga0307509_10003194 3300031507 Bacteria 25340
66 Ga0316575_10003738 3300031665 Bacteria 5287
67 Ga0316575_10190168 3300031665 Bacteria 854
68 Ga0265314_10000004 3300031711 Bacteria 939480
69 Ga0265314_10008474 3300031711 Bacteria 8800
70 Ga0265342_10000316 3300031712 Bacteria 55027
71 Ga0316576_10231803 3300031727 Bacteria 1388
72 Ga0316576_10253736 3300031727 Bacteria 1320
73 Ga0316577_10049910 3300031733 Bacteria 2335
74 Ga0307413_10710026 3300031824 Bacteria 836
75 Ga0307409_100566015 3300031995 Bacteria 1118
76 Ga0307416_101211020 3300032002 Bacteria 861
77 Ga0307415_100882067 3300032126 Bacteria 823
78 Ga0316583_10000916 3300032133 Bacteria 9490
79 Ga0373941_0010111 3300035115 Bacteria 2397
80 Ga0373957_0255442 3300035120 Bacteria 738
81 Ga0316574_0116242 3300035398 Bacteria 1716
82 Ga0373924_0004144 3300035410 Bacteria 5042
83 Ga0373931_0004075 3300035691 Bacteria 6626
84 Ga0373937_0005394 3300036401 Bacteria 10939
85 Ga0373937_0115913 3300036401 Bacteria 2495
86 Ga0373937_0289061 3300036401 Bacteria 1549
87 Ga0316584_0237407 3300036712 Bacteria 1335
88 Ga0373925_0570216 3300037068 Bacteria 931
89 Ga0395905_0006949 3300037471 Bacteria 11310
90 Ga0395905_0022964 3300037471 Bacteria 5895
91 Ga0400490_07938 3300038726 Bacteria 12504
92 Ga0400491_13753 3300038727 Bacteria 3262
93 Ga0439449_0119347 3300042007 Bacteria 979
94 Ga0439459_0001214 3300042438 Bacteria 3767
95 Ga0451577_0003229 3300042876 Bacteria 18324
96 Ga0451577_0004242 3300042876 Bacteria 15258
97 Ga0451577_0007231 3300042876 Bacteria 10942
98 Ga0451577_0060469 3300042876 Bacteria 3378
99 Ga0451577_0192005 3300042876 Unclassified 1842
100 Ga0451577_0256641 3300042876 Unclassified 1583
101 Ga0451577_0425333 3300042876 Bacteria 1206
102 Ga0453683_0000881 3300044673 Bacteria 28791
103 Ga0453683_0210272 3300044673 Bacteria 1236
104 Ga0466965_0327326 3300044683 Bacteria 836
105 Ga0453684_0003065 3300044712 Bacteria 38712
106 Ga0453684_0004071 3300044712 Bacteria 31771
107 Ga0453684_0004549 3300044712 Bacteria 29034
108 Ga0453684_0008590 3300044712 Bacteria 18216
109 Ga0453684_0016446 3300044712 Bacteria 11566
110 Ga0453684_0325071 3300044712 Bacteria 1741
111 Ga0451576_0002935 3300045051 Bacteria 24231
112 Ga0451576_0020872 3300045051 Bacteria 7129
113 Ga0451576_0118418 3300045051 Bacteria 2757
114 Ga0451576_0133125 3300045051 Bacteria 2592
115 Ga0451576_0161161 3300045051 Bacteria 2341
116 Ga0451576_0221132 3300045051 Bacteria 1977
117 Ga0451576_0604729 3300045051 Bacteria 1152
118 Ga0451576_1084888 3300045051 Unclassified 838
119 Ga0466958_0153915 3300045836 Bacteria 1451
120 Ga0466967_0007518 3300045976 Bacteria 7869
121 Ga0495590_0032960 3300046457 Bacteria 1811
122 Ga0495638_0000007 3300046460 Bacteria 602783
123 Ga0495653_0432371 3300046463 Bacteria 831
124 Ga0495608_0074840 3300046511 Unclassified 2207
125 Ga0495613_0039178 3300046689 Unclassified 3513
126 Ga0495674_0301398 3300047319 Bacteria 1309
127 Ga0495684_0006926 3300047471 Bacteria 8803
128 Ga0501039_0048051 3300049575 Unclassified 3298
129 Ga0501039_0078684 3300049575 Bacteria 2565
130 Ga0501040_0011351 3300049576 Bacteria 5831
131 Ga0501042_0042019 3300049578 Bacteria 3252
132 Ga0501046_0034183 3300049580 Unclassified 4104
133 Ga0501048_0072982 3300049582 Unclassified 2422
134 Ga0501048_0361512 3300049582 Unclassified 1036
135 Ga0501068_0447175 3300049584 Bacteria 836
136 Ga0501072_0047997 3300049588 Bacteria 3362
137 Ga0501075_0017463 3300049591 Bacteria 5184
138 Ga0501076_0016617 3300049592 Bacteria 5579
139 Ga0501228_002383 3300049666 Bacteria 1467
140 Ga0501079_0028955 3300049741 Bacteria 4251
141 Ga0501081_0015027 3300049743 Bacteria 5109
142 Ga0501045_0008251 3300049824 Bacteria 7252
143 nmdc:mga03683_238008_c1 3300050489 Bacteria 843
144 nmdc:mga03n38_151478_c1 3300050490 Bacteria 1167
145 nmdc:mga00v17_60587_c2 3300050491 Bacteria 1864
146 nmdc:mga0yw44_570029_c1 3300050492 Bacteria 769
147 nmdc:mga0k408_80882_c1 3300050493 Bacteria 1902
148 nmdc:mga06z11_21805_c1 3300050494 Bacteria 2981
149 nmdc:mga06z11_30409_c1 3300050494 Bacteria 2613
150 nmdc:mga04h51_93340_c1 3300050495 Bacteria 1086
151 nmdc:mga0qj67_41433_c1 3300050509 Bacteria 3622
152 nmdc:mga08y16_503042_c1 3300050511 Bacteria 1231
153 nmdc:mga0n895_13243_c1 3300050512 Bacteria 7433
154 nmdc:mga08x19_441686_c1 3300050514 Bacteria 915
155 Ga0500651_0096207 3300053093 Bacteria 1820
156 Ga0500641_0000984 3300053096 Bacteria 10125
157 Ga0500555_000126 3300053103 Bacteria 36617
158 Ga0500568_0001820 3300053139 Bacteria 13136
159 Ga0500616_0000132 3300053153 Bacteria 130902
160 Ga0500645_000133 3300053730 Bacteria 58697
161 Ga0501084_0014557 3300054114 Bacteria 6521
162 Ga0501084_0025558 3300054114 Bacteria 4926
163 Ga0587079_011521 3300059647 Bacteria 1427
164 Ga0501082_0026630 3300060353 Unclassified 4984
165 Ga0530510_0017365 3300061734 Bacteria 5100
166 2891634478 2891633521 Bacteria 4602265
167 Ga0157380_10029379
168 Ga0070658_10069713
169 Ga0070670_100056098
170 Ga0070670_100107416
171 Ga0070680_100198550
172 Ga0070675_100113814
173 Ga0070674_100063113
174 Ga0070678_100080525
175 Ga0070681_10008872
176 Ga0070685_10571154
177 Ga0070672_100120316
178 Ga0070665_100001313
179 Ga0070665_100409618
180 Ga0081455_10000573
181 Ga0075365_10334449
182 Ga0075368_10058562
183 Ga0075364_10109586
184 Ga0075362_10189759
185 Ga0075367_10028742
186 Ga0075366_10182576
187 Ga0075430_100015642
188 Ga0075433_10493000
189 Ga0075434_100035605
190 Ga0075436_100246934
191 Ga0111539_10046195
192 Ga0105241_10095971
193 Ga0105242_10399874
194 Ga0207680_10292113
195 Ga0207707_10023138
196 Ga0207660_10139604
197 Ga0207652_10126932
198 Ga0207650_10136520
199 Ga0207659_10096845
200 Ga0207686_10439059
201 Ga0207691_10002052
202 Ga0207651_10216321
203 Ga0207683_10090239
204 Ga0210002_1002415
205 Ga0209971_1007075
206 Ga0209966_1030690
207 Ga0209813_10078587
208 Ga0209974_10001547
209 Ga0268266_10003398
210 Ga0268266_10499707
211 Ga0265322_10000090
212 Ga0265338_10093066
213 Ga0265330_10000001
214 Ga0265332_10000007
215 Ga0265320_10137996
216 Ga0265325_10021332
217 Ga0265339_10009470
218 Ga0265331_10017281
219 Ga0265331_10018698
220 Ga0265331_10069191
221 Ga0265331_10071153
222 Ga0265331_10072995
223 Ga0265331_10196772
224 Ga0265327_10009304
225 Ga0265327_10021211
226 Ga0265327_10082505
227 Ga0265327_10128137
228 Ga0265327_10187048
229 Ga0265316_10000004
230 Ga0265316_10043981
231 Ga0307509_10003194
232 Ga0316575_10003738
233 Ga0316575_10190168
234 Ga0265314_10000004
235 Ga0265314_10008474
236 Ga0265342_10000316
237 Ga0316576_10231803
238 Ga0316576_10253736
239 Ga0316577_10049910
240 Ga0307413_10710026
241 Ga0307409_100566015
242 Ga0307416_101211020
243 Ga0307415_100882067
244 Ga0316583_10000916
245 Ga0373941_0010111
246 Ga0373957_0255442
247 Ga0316574_0116242
248 Ga0373924_0004144
249 Ga0373931_0004075
250 Ga0373937_0005394
251 Ga0373937_0115913
252 Ga0373937_0289061
253 Ga0316584_0237407
254 Ga0373925_0570216
255 Ga0395905_0006949
256 Ga0395905_0022964
257 Ga0400490_07938
258 Ga0400491_13753
259 Ga0439449_0119347
260 Ga0439459_0001214
261 Ga0451577_0003229
262 Ga0451577_0004242
263 Ga0451577_0007231
264 Ga0451577_0060469
265 Ga0451577_0192005
266 Ga0451577_0256641
267 Ga0451577_0425333
268 Ga0453683_0000881
269 Ga0453683_0210272
270 Ga0466965_0327326
271 Ga0453684_0003065
272 Ga0453684_0004071
273 Ga0453684_0004549
274 Ga0453684_0008590
275 Ga0453684_0016446
276 Ga0453684_0325071
277 Ga0451576_0002935
278 Ga0451576_0020872
279 Ga0451576_0118418
280 Ga0451576_0133125
281 Ga0451576_0161161
282 Ga0451576_0221132
283 Ga0451576_0604729
284 Ga0451576_1084888
285 Ga0466958_0153915
286 Ga0466967_0007518
287 Ga0495590_0032960
288 Ga0495638_0000007
289 Ga0495653_0432371
290 Ga0495608_0074840
291 Ga0495613_0039178
292 Ga0495674_0301398
293 Ga0495684_0006926
294 Ga0501039_0048051
295 Ga0501039_0078684
296 Ga0501040_0011351
297 Ga0501042_0042019
298 Ga0501046_0034183
299 Ga0501048_0072982
300 Ga0501048_0361512
301 Ga0501068_0447175
302 Ga0501072_0047997
303 Ga0501075_0017463
304 Ga0501076_0016617
305 Ga0501228_002383
306 Ga0501079_0028955
307 Ga0501081_0015027
308 Ga0501045_0008251
309 nmdc:mga03683_238008_c1
310 nmdc:mga03n38_151478_c1
311 nmdc:mga00v17_60587_c2
312 nmdc:mga0yw44_570029_c1
313 nmdc:mga0k408_80882_c1
314 nmdc:mga06z11_21805_c1
315 nmdc:mga06z11_30409_c1
316 nmdc:mga04h51_93340_c1
317 nmdc:mga0qj67_41433_c1
318 nmdc:mga08y16_503042_c1
319 nmdc:mga0n895_13243_c1
320 nmdc:mga08x19_441686_c1
321 Ga0500651_0096207
322 Ga0500641_0000984
323 Ga0500555_000126
324 Ga0500568_0001820
325 Ga0500616_0000132
326 Ga0500645_000133
327 Ga0501084_0014557
328 Ga0501084_0025558
329 Ga0587079_011521
330 Ga0501082_0026630
331 Ga0530510_0017365
332 2891634478

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

147

203

0.98

PF00072

Response_reg

Response regulator receiver domain

1

110

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.9679 3 120
1zlj-assembly2.cif.gz_C crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain 0.9641 146 202
1zlj-assembly4.cif.gz_H crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain 0.9584 146 202
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9532 145 200
3b2n-assembly1.cif.gz_A crystal structure of dna-binding response regulator, luxr family, from staphylococcus aureus 0.9514 4 120
ID Description Score Start End Superfamily
6ekhY00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9679 3 120 3.40.50.2300
3p7nA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9655 146 204 1.10.10.10
4le0B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9618 4 129 3.40.50.2300
af_Q2FY79_1_81_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9612 5 85 3.40.50.2300
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9581 146 202 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2A2Q344-F1-model_v4 DNA-binding response regulator 0.9743 3 208 GO:0000160
GO:0003677
GO:0006355
AF-A0A1J5CZN0-F1-model_v4 Response regulatory domain-containing protein 0.9704 1 131 GO:0000160
AF-A0A0W0GH73-F1-model_v4 Response regulator receiver protein 0.9695 3 129 GO:0000160
GO:0003677
AF-A0A7X0QIW4-F1-model_v4 deleted 0.9676 1 129
AF-Q1IJ69-F1-model_v4 Response regulator receiver protein 0.9665 1 132 GO:0000160

Map