F247998

General Info

Members Datasets Scaffolds Average Seq Length
166 98 332 187

Family's Representative Sequence

Representative Sequence 3300005614|Ga0068856_100357879|Ga0068856_1003578792
Length 212
Sequence VEIRDVAQRQLLRYARTLILRFMRLFTAIDLSQEILLRLDRLVAALRPEALIKWSPLDNLHITTKFIGEWPEARLEELNTTLLKVVPRKPFQVEIRSLGWFPNERAPRVLWVGVEGGDALTSLARATDEILTSLGVAEESREFSPHLTIARIKNPVPLRGLRQKVEEMRNALIGQFEVSQFNLFRSDPGSNASIYRKLREYKFETALAVAAQ

Samples

Sample ID Description Type Environment
1 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
36 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
47 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
67 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
68 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
69 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
75 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
76 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
77 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
78 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
79 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
80 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
84 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
85 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
96 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.8
Metatranscriptomes 1.2
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.81
Rhizosphere 72.89
Stem 0
Stem Tuber 0
Unclassified 24.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068856_100357879 3300005614 Unclassified 1478
2 Ga0070683_100536771 3300005329 Archaea 1118
3 Ga0070683_100750268 3300005329 Unclassified 935
4 Ga0070680_100335478 3300005336 Bacteria 1284
5 Ga0070682_100077906 3300005337 Bacteria 2137
6 Ga0068868_100006402 3300005338 Bacteria 8330
7 Ga0070660_100097681 3300005339 Unclassified 2324
8 Ga0070661_100119081 3300005344 Bacteria 1976
9 Ga0070675_100631887 3300005354 Bacteria 972
10 Ga0070659_100276968 3300005366 Bacteria 1395
11 Ga0070659_100345086 3300005366 Bacteria 1248
12 Ga0070667_100178417 3300005367 Bacteria 1878
13 Ga0070709_10909803 3300005434 Unclassified 696
14 Ga0070714_100013115 3300005435 Bacteria 6635
15 Ga0070714_100402324 3300005435 Bacteria 1294
16 Ga0070705_100203173 3300005440 Bacteria 1360
17 Ga0070694_100643949 3300005444 Unclassified 857
18 Ga0070681_10853855 3300005458 Bacteria 828
19 Ga0070679_100337771 3300005530 Unclassified 1455
20 Ga0068853_100046847 3300005539 Bacteria 3709
21 Ga0068853_100552150 3300005539 Bacteria 1091
22 Ga0068853_100632787 3300005539 Bacteria 1017
23 Ga0070693_100102581 3300005547 Bacteria 1745
24 Ga0070665_100060628 3300005548 Bacteria 3792
25 Ga0068855_100783297 3300005563 Bacteria 1015
26 Ga0070664_100042391 3300005564 Bacteria 3842
27 Ga0070664_100860094 3300005564 Bacteria 849
28 Ga0068857_100383060 3300005577 Bacteria 1306
29 Ga0068856_100008335 3300005614 Bacteria 10098
30 Ga0068856_100855853 3300005614 Unclassified 928
31 Ga0068856_101228630 3300005614 Unclassified 765
32 Ga0068859_100026572 3300005617 Bacteria 5804
33 Ga0081455_10082299 3300005937 Unclassified 2633
34 Ga0070717_10012896 3300006028 Bacteria 6383
35 Ga0097621_100100511 3300006237 Bacteria 2433
36 Ga0097621_100187677 3300006237 Bacteria 1789
37 Ga0068871_100330298 3300006358 Bacteria 1345
38 Ga0097620_100026572 3300006931 Bacteria 5804
39 Ga0099794_10042738 3300007265 Bacteria 2161
40 Ga0105240_11026937 3300009093 Unclassified 881
41 Ga0105245_10080243 3300009098 Bacteria 2981
42 Ga0105245_10886291 3300009098 Unclassified 933
43 Ga0105241_10087733 3300009174 Bacteria 2449
44 Ga0105241_10636461 3300009174 Bacteria 967
45 Ga0105238_10008617 3300009551 Bacteria 10204
46 Ga0105239_11055382 3300010375 Bacteria 935
47 Ga0157373_10324611 3300013100 Bacteria 1095
48 Ga0157371_10104821 3300013102 Unclassified 2006
49 Ga0157370_10114511 3300013104 Bacteria 2519
50 Ga0157370_10176230 3300013104 Bacteria 1987
51 Ga0157369_10003629 3300013105 Bacteria 18314
52 Ga0157369_10026387 3300013105 Bacteria 6444
53 Ga0157369_10151254 3300013105 Bacteria 2453
54 Ga0157369_10165120 3300013105 Bacteria 2336
55 Ga0157374_10002666 3300013296 Bacteria 15033
56 Ga0157374_10193734 3300013296 Bacteria 1988
57 Ga0157374_10461060 3300013296 Bacteria 1273
58 Ga0157378_10208533 3300013297 Unclassified 1852
59 Ga0157372_10045604 3300013307 Bacteria 4864
60 Ga0163163_10223092 3300014325 Unclassified 1934
61 Ga0157376_11584328 3300014969 Archaea 689
62 Ga0197907_10117892 3300020069 Bacteria 1379
63 Ga0206350_11442154 3300020080 Bacteria 849
64 Ga0213872_10007208 3300021361 Bacteria 5495
65 Ga0213872_10230235 3300021361 Unclassified 786
66 Ga0213874_10017815 3300021377 Bacteria 1911
67 Ga0213876_10001346 3300021384 Bacteria 15376
68 Ga0213876_10004741 3300021384 Bacteria 7558
69 Ga0213876_10095401 3300021384 Bacteria 1576
70 Ga0213876_10238919 3300021384 Unclassified 966
71 Ga0213875_10000017 3300021388 Bacteria 239813
72 Ga0213875_10000196 3300021388 Bacteria 61973
73 Ga0213875_10004637 3300021388 Bacteria 7491
74 Ga0213875_10005204 3300021388 Bacteria 7030
75 Ga0213875_10022630 3300021388 Bacteria 3005
76 Ga0213875_10068839 3300021388 Bacteria 1653
77 Ga0213875_10118167 3300021388 Unclassified 1239
78 Ga0207695_10674434 3300025913 Unclassified 914
79 Ga0207657_10080997 3300025919 Bacteria 2728
80 Ga0207649_10127592 3300025920 Bacteria 1724
81 Ga0207652_10734379 3300025921 Bacteria 879
82 Ga0207694_10481372 3300025924 Bacteria 1038
83 Ga0207687_10052130 3300025927 Bacteria 2854
84 Ga0207664_10012012 3300025929 Bacteria 6182
85 Ga0207661_10122143 3300025944 Bacteria 2219
86 Ga0207679_10777410 3300025945 Bacteria 872
87 Ga0207667_11214658 3300025949 Unclassified 733
88 Ga0207658_10151077 3300025986 Bacteria 1892
89 Ga0207677_10026951 3300026023 Bacteria 3611
90 Ga0207639_10011931 3300026041 Bacteria 6045
91 Ga0207639_10375401 3300026041 Archaea 1276
92 Ga0207639_10520721 3300026041 Bacteria 1089
93 Ga0207702_10164993 3300026078 Unclassified 2026
94 Ga0207702_11298621 3300026078 Unclassified 722
95 Ga0207674_10171842 3300026116 Bacteria 2120
96 Ga0209588_1070315 3300027671 Bacteria 1131
97 Ga0373936_0126596 3300035113 Unclassified 1095
98 Ga0373946_0394013 3300035171 Unclassified 698
99 Ga0373935_0082848 3300035692 Bacteria 2087
100 Ga0373927_0222829 3300035695 Unclassified 1239
101 Ga0373925_0455942 3300037068 Unclassified 1047
102 Ga0436364_0149922 3300037853 Bacteria 13475
103 Ga0436364_0184042 3300037853 Bacteria 2726
104 Ga0436364_0201448 3300037853 Unclassified 1307
105 Ga0436364_0278774 3300037853 Bacteria 400541
106 Ga0436364_0339530 3300037853 Bacteria 240640
107 Ga0436364_0395635 3300037853 Bacteria 9682
108 Ga0436364_0438749 3300037853 Bacteria 3013
109 Ga0436364_0514382 3300037853 Bacteria 1247
110 Ga0436364_0555086 3300037853 Bacteria 3668
111 Ga0436364_0564673 3300037853 Bacteria 7197
112 Ga0436364_0583897 3300037853 Bacteria 12392
113 Ga0436364_0718780 3300037853 Bacteria 5197
114 Ga0436364_0765824 3300037853 Bacteria 16271
115 Ga0436364_0876585 3300037853 Bacteria 1744
116 Ga0436364_0878657 3300037853 Unclassified 771
117 Ga0436364_1311774 3300037853 Bacteria 10103
118 Ga0436364_1444239 3300037853 Bacteria 4789
119 Ga0436364_1532454 3300037853 Unclassified 1429
120 Ga0436364_1548279 3300037853 Unclassified 915
121 Ga0395901_1528887 3300038443 Bacteria 623
122 Ga0436365_0093276 3300039437 Bacteria 46149
123 Ga0436365_0128956 3300039437 Unclassified 4248
124 Ga0436365_0395578 3300039437 Bacteria 1180
125 Ga0436365_0519182 3300039437 Bacteria 1869
126 Ga0436365_0671981 3300039437 Bacteria 14445
127 Ga0436365_0790130 3300039437 Bacteria 2996
128 Ga0436365_1741072 3300039437 Bacteria 3396
129 Ga0436360_0795938 3300039438 Bacteria 12122
130 Ga0436361_0474888 3300039447 Bacteria 2524
131 Ga0436361_0863641 3300039447 Bacteria 83672
132 Ga0436361_1075366 3300039447 Bacteria 1139
133 Ga0436363_1007438 3300039450 Unclassified 2430
134 Ga0436363_1357069 3300039450 Bacteria 10849
135 Ga0436363_1421879 3300039450 Bacteria 5687
136 Ga0436362_0268206 3300039453 Bacteria 2231
137 Ga0436362_0956868 3300039453 Unclassified 1300
138 Ga0436362_1238345 3300039453 Unclassified 1571
139 Ga0466963_0705657 3300044694 Unclassified 712
140 Ga0466960_0179021 3300044901 Unclassified 1148
141 Ga0466959_0233427 3300045049 Unclassified 1273
142 Ga0466967_1062620 3300045976 Unclassified 806
143 Ga0496104_0281900 3300048907 Unclassified 1575
144 Ga0496112_0016386 3300048915 Bacteria 6942
145 Ga0496115_0004257 3300048918 Bacteria 10351
146 Ga0496126_0093858 3300048929 Bacteria 2634
147 Ga0501032_0061739 3300049569 Bacteria 2512
148 Ga0501033_0021823 3300049570 Bacteria 4832
149 Ga0501034_0036855 3300049571 Bacteria 4952
150 Ga0501036_0132792 3300049572 Bacteria 2101
151 Ga0501038_0198497 3300049574 Bacteria 1611
152 Ga0501046_0043876 3300049580 Bacteria 3558
153 Ga0501047_0031225 3300049581 Bacteria 5138
154 Ga0501047_0206404 3300049581 Bacteria 1824
155 Ga0501070_0057659 3300049586 Bacteria 3220
156 Ga0501070_0143966 3300049586 Bacteria 1968
157 Ga0501073_0053342 3300049589 Bacteria 2831
158 Ga0501074_0079315 3300049590 Bacteria 2356
159 Ga0501080_0495010 3300049742 Bacteria 1093
160 Ga0501080_0885251 3300049742 Unclassified 779
161 Ga0501035_0016492 3300049822 Bacteria 6813
162 Ga0501035_0647153 3300049822 Unclassified 857
163 Ga0501044_0002680 3300049823 Bacteria 20245
164 Ga0501044_0004905 3300049823 Bacteria 14957
165 Ga0501044_0039007 3300049823 Unclassified 4958
166 Ga0501044_0120351 3300049823 Bacteria 2627
167 Ga0068856_100357879
168 Ga0070683_100536771
169 Ga0070683_100750268
170 Ga0070680_100335478
171 Ga0070682_100077906
172 Ga0068868_100006402
173 Ga0070660_100097681
174 Ga0070661_100119081
175 Ga0070675_100631887
176 Ga0070659_100276968
177 Ga0070659_100345086
178 Ga0070667_100178417
179 Ga0070709_10909803
180 Ga0070714_100013115
181 Ga0070714_100402324
182 Ga0070705_100203173
183 Ga0070694_100643949
184 Ga0070681_10853855
185 Ga0070679_100337771
186 Ga0068853_100046847
187 Ga0068853_100552150
188 Ga0068853_100632787
189 Ga0070693_100102581
190 Ga0070665_100060628
191 Ga0068855_100783297
192 Ga0070664_100042391
193 Ga0070664_100860094
194 Ga0068857_100383060
195 Ga0068856_100008335
196 Ga0068856_100855853
197 Ga0068856_101228630
198 Ga0068859_100026572
199 Ga0081455_10082299
200 Ga0070717_10012896
201 Ga0097621_100100511
202 Ga0097621_100187677
203 Ga0068871_100330298
204 Ga0097620_100026572
205 Ga0099794_10042738
206 Ga0105240_11026937
207 Ga0105245_10080243
208 Ga0105245_10886291
209 Ga0105241_10087733
210 Ga0105241_10636461
211 Ga0105238_10008617
212 Ga0105239_11055382
213 Ga0157373_10324611
214 Ga0157371_10104821
215 Ga0157370_10114511
216 Ga0157370_10176230
217 Ga0157369_10003629
218 Ga0157369_10026387
219 Ga0157369_10151254
220 Ga0157369_10165120
221 Ga0157374_10002666
222 Ga0157374_10193734
223 Ga0157374_10461060
224 Ga0157378_10208533
225 Ga0157372_10045604
226 Ga0163163_10223092
227 Ga0157376_11584328
228 Ga0197907_10117892
229 Ga0206350_11442154
230 Ga0213872_10007208
231 Ga0213872_10230235
232 Ga0213874_10017815
233 Ga0213876_10001346
234 Ga0213876_10004741
235 Ga0213876_10095401
236 Ga0213876_10238919
237 Ga0213875_10000017
238 Ga0213875_10000196
239 Ga0213875_10004637
240 Ga0213875_10005204
241 Ga0213875_10022630
242 Ga0213875_10068839
243 Ga0213875_10118167
244 Ga0207695_10674434
245 Ga0207657_10080997
246 Ga0207649_10127592
247 Ga0207652_10734379
248 Ga0207694_10481372
249 Ga0207687_10052130
250 Ga0207664_10012012
251 Ga0207661_10122143
252 Ga0207679_10777410
253 Ga0207667_11214658
254 Ga0207658_10151077
255 Ga0207677_10026951
256 Ga0207639_10011931
257 Ga0207639_10375401
258 Ga0207639_10520721
259 Ga0207702_10164993
260 Ga0207702_11298621
261 Ga0207674_10171842
262 Ga0209588_1070315
263 Ga0373936_0126596
264 Ga0373946_0394013
265 Ga0373935_0082848
266 Ga0373927_0222829
267 Ga0373925_0455942
268 Ga0436364_0149922
269 Ga0436364_0184042
270 Ga0436364_0201448
271 Ga0436364_0278774
272 Ga0436364_0339530
273 Ga0436364_0395635
274 Ga0436364_0438749
275 Ga0436364_0514382
276 Ga0436364_0555086
277 Ga0436364_0564673
278 Ga0436364_0583897
279 Ga0436364_0718780
280 Ga0436364_0765824
281 Ga0436364_0876585
282 Ga0436364_0878657
283 Ga0436364_1311774
284 Ga0436364_1444239
285 Ga0436364_1532454
286 Ga0436364_1548279
287 Ga0395901_1528887
288 Ga0436365_0093276
289 Ga0436365_0128956
290 Ga0436365_0395578
291 Ga0436365_0519182
292 Ga0436365_0671981
293 Ga0436365_0790130
294 Ga0436365_1741072
295 Ga0436360_0795938
296 Ga0436361_0474888
297 Ga0436361_0863641
298 Ga0436361_1075366
299 Ga0436363_1007438
300 Ga0436363_1357069
301 Ga0436363_1421879
302 Ga0436362_0268206
303 Ga0436362_0956868
304 Ga0436362_1238345
305 Ga0466963_0705657
306 Ga0466960_0179021
307 Ga0466959_0233427
308 Ga0466967_1062620
309 Ga0496104_0281900
310 Ga0496112_0016386
311 Ga0496115_0004257
312 Ga0496126_0093858
313 Ga0501032_0061739
314 Ga0501033_0021823
315 Ga0501034_0036855
316 Ga0501036_0132792
317 Ga0501038_0198497
318 Ga0501046_0043876
319 Ga0501047_0031225
320 Ga0501047_0206404
321 Ga0501070_0057659
322 Ga0501070_0143966
323 Ga0501073_0053342
324 Ga0501074_0079315
325 Ga0501080_0495010
326 Ga0501080_0885251
327 Ga0501035_0016492
328 Ga0501035_0647153
329 Ga0501044_0002680
330 Ga0501044_0004905
331 Ga0501044_0039007
332 Ga0501044_0120351

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02834

LigT_PEase

LigT like Phosphoesterase

29

111

0.95

PF13563

2_5_RNA_ligase2

2'-5' RNA ligase superfamily

36

190

0.86

PF02834

LigT_PEase

LigT like Phosphoesterase

112

195

0.83

PF10469

AKAP7_NLS

AKAP7 2'5' RNA ligase-like domain

59

203

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vgj-assembly1.cif.gz_A crystal structure of 2'-5' rna ligase from pyrococcus horikoshii 0.8718 1 182
1vgj-assembly1.cif.gz_A crystal structure of 2'-5' rna ligase from pyrococcus horikoshii 0.8674 1 182
2fyh-assembly1.cif.gz_A solution structure of the 2'-5' rna ligase-like protein from pyrococcus furiosus 0.84 1 182
2fyh-assembly1.cif.gz_A solution structure of the 2'-5' rna ligase-like protein from pyrococcus furiosus 0.8358 1 182
5ldo-assembly1.cif.gz_A crystal structure of e.coli ligt complexed with 3'-amp 0.8325 2 182
ID Description Score Start End Superfamily
af_Q58963_1_173_3.90.1140.10 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.8741 1 178 3.90.1140.10
af_Q58963_1_173_3.90.1140.10 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.8694 1 178 3.90.1140.10
1vgjA00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.8606 2 182 3.90.1140.10
1vgjA00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.8561 2 182 3.90.1140.10
5ldmB00 Alpha Beta;Alpha-Beta Complex;Cyclic Phosphodiesterase; Chain: A,;Cyclic phosphodiesterase 0.8259 2 182 3.90.1140.10
ID Description Score Start End GO Terms
AF-A0A7C2E7G3-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9432 1 181 GO:0004113
GO:0008664
AF-A0A7C2E7G3-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9331 1 181 GO:0004113
GO:0008664
AF-A0A7J4E1L8-F1-model_v4 deleted 0.9214 1 133
AF-A0A2N9LIT3-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9197 1 179 GO:0004113
GO:0008664
GO:0016874
AF-A0A2E5FJB9-F1-model_v4 RNA 2',3'-cyclic phosphodiesterase (RNA 2',3'-CPDase) (EC 3.1.4.58) 0.9187 1 182 GO:0004113
GO:0008664

Map