F247866

General Info

Members Datasets Scaffolds Average Seq Length
166 145 332 318

Family's Representative Sequence

Representative Sequence 3300005455|Ga0070663_100020019|Ga0070663_1000200193
Length 356
Sequence MQNGLESTHPYAIVYSRSMDVIAGLLNGPRADGAFLLRSLLTPPWSLRVQDQAPLTLVAVISGTAWVIPEPEPAASTASLVVTAPTRLQTGDLAILRGPDPYVFADDPGTPPQAVIHPGQRCTTPDGEELGDLRSLGTRSWGNAPDGATVLVTGTYQVLSEICVPLLSALPPLAVLRDGECDTPLIPLLADEVARDTPGQDAVLDRLLDLLTVVALRTWLARPDVETPAWYRAQDDPVVGTALRLIHDAPAHPWTVAALADAAHVSRAALARRFTSEVGEPPMAYLANWRLALSADLLRDPSATIASVAEQVGYGSAFALSAAFKRVRGISPKEHRERAARNDMPVAAVRPWRVAV

Samples

Sample ID Description Type Environment
1 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
7 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
8 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
9 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
10 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
11 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
12 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
13 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
28 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
29 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
30 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
32 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
44 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
45 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
46 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
47 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
48 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
49 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
52 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
53 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
54 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
55 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
56 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
57 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
58 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
59 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
60 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
63 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
64 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
65 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
66 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
67 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
68 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
69 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
70 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
71 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
72 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
73 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
74 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
75 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
76 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
77 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
78 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
79 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
80 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
81 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
82 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
83 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
84 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
85 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
86 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
87 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
90 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
91 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
92 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
93 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
94 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
95 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
96 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
97 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
101 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
102 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
103 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
106 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
110 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
113 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
114 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
115 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
116 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
117 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
118 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
119 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
120 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
121 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
122 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
123 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
124 2508501039 Frankia saprophytica CN3 Isolate Nodule
125 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
126 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
127 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
128 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
129 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
130 2643221615 Nocardioides sp. Root224 Isolate Unclassified
131 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
132 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
133 2687453737 Frankia sp. BMG5.36 Isolate Nodule
134 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
135 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
136 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
137 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
138 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
139 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
140 2874123672 Mesorhizobium sp. M00.F.Ca.ET.216.01.1.1 Isolate Nodule
141 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
142 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
143 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
144 8002775197 Frankia nepalensis CN7 Isolate Nodule
145 8002784119 Frankia sp. AgB1.9 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 86.14
Metatranscriptomes 0
Isolates 13.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.01
Nodule 4.22
Rhizoplane 1.81
Rhizosphere 78.92
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070663_100020019 3300005455 Bacteria 4421
2 Ga0068869_100191147 3300005334 Bacteria 1610
3 Ga0070667_100281064 3300005367 Bacteria 1494
4 Ga0070714_100008725 3300005435 Bacteria 7924
5 Ga0070714_100082476 3300005435 Bacteria 2801
6 Ga0070713_100120938 3300005436 Bacteria 2296
7 Ga0068853_100089347 3300005539 Bacteria 2706
8 Ga0068855_100021952 3300005563 Bacteria 7653
9 Ga0068854_100006968 3300005578 Bacteria 7210
10 Ga0068852_100005627 3300005616 Bacteria 8988
11 Ga0068860_100054642 3300005843 Bacteria 3796
12 Ga0081538_10043838 3300005981 Bacteria 2801
13 Ga0081540_1000101 3300005983 Bacteria 91600
14 Ga0070715_10030163 3300006163 Bacteria 2190
15 Ga0075428_100064872 3300006844 Bacteria 3999
16 Ga0075430_100002728 3300006846 Bacteria 14737
17 Ga0075431_100006804 3300006847 Bacteria 11356
18 Ga0075431_100190268 3300006847 Bacteria 2103
19 Ga0075433_10055854 3300006852 Bacteria 3448
20 Ga0075433_10060777 3300006852 Bacteria 3309
21 Ga0075429_100004712 3300006880 Bacteria 11737
22 Ga0075436_100034941 3300006914 Bacteria 3467
23 Ga0075436_100276037 3300006914 Bacteria 1201
24 Ga0111539_10315500 3300009094 Bacteria 1819
25 Ga0105247_10193132 3300009101 Bacteria 1364
26 Ga0114129_10010310 3300009147 Bacteria 13334
27 Ga0114129_10041540 3300009147 Bacteria 6479
28 Ga0114129_10829284 3300009147 Bacteria 1177
29 Ga0105241_10013221 3300009174 Bacteria 6050
30 Ga0105237_10052656 3300009545 Bacteria 4085
31 Ga0105237_10052687 3300009545 Bacteria 4083
32 Ga0157374_10083906 3300013296 Bacteria 3027
33 Ga0163162_10605438 3300013306 Bacteria 1222
34 Ga0157375_10165135 3300013308 Bacteria 2358
35 Ga0182008_10008518 3300014497 Bacteria 5600
36 Ga0182007_10001401 3300015262 Bacteria 12976
37 Ga0209677_102332 3300025253 Bacteria 7286
38 Ga0209233_1000169 3300025261 Bacteria 148980
39 Ga0207647_10003734 3300025904 Bacteria 11386
40 Ga0207684_10416418 3300025910 Bacteria 1155
41 Ga0207695_10001544 3300025913 Bacteria 37922
42 Ga0207671_10000122 3300025914 Bacteria 119512
43 Ga0207700_10212665 3300025928 Bacteria 1636
44 Ga0207664_10313539 3300025929 Bacteria 1382
45 Ga0207669_10335334 3300025937 Bacteria 1163
46 Ga0207689_10208559 3300025942 Bacteria 1614
47 Ga0207667_10099904 3300025949 Bacteria 2994
48 Ga0207640_10045462 3300025981 Bacteria 2820
49 Ga0207678_10032637 3300026067 Bacteria 4537
50 Ga0307509_10005722 3300031507 Bacteria 17126
51 Ga0307405_10068854 3300031731 Bacteria 2266
52 Ga0307410_10078898 3300031852 Bacteria 2305
53 Ga0307410_10246674 3300031852 Bacteria 1387
54 Ga0307406_10051641 3300031901 Bacteria 2611
55 Ga0307407_10026172 3300031903 Bacteria 3086
56 Ga0307412_10215341 3300031911 Bacteria 1469
57 Ga0307409_100000317 3300031995 Bacteria 19732
58 Ga0307416_100015474 3300032002 Bacteria 5273
59 Ga0307416_100017269 3300032002 Bacteria 5043
60 Ga0307411_10164281 3300032005 Bacteria 1667
61 Ga0307411_10374334 3300032005 Bacteria 1169
62 Ga0307415_100000078 3300032126 Bacteria 39773
63 Ga0307415_100207802 3300032126 Bacteria 1559
64 Ga0307507_10074943 3300033179 Bacteria 3031
65 Ga0373926_0033406 3300035083 Bacteria 1818
66 Ga0373934_0048722 3300035086 Bacteria 1678
67 Ga0373951_0000084 3300035091 Bacteria 37175
68 Ga0373945_0084215 3300035116 Bacteria 1222
69 Ga0373943_0053834 3300035170 Bacteria 1988
70 Ga0373943_0141044 3300035170 Bacteria 1298
71 Ga0373946_0125115 3300035171 Bacteria 1177
72 Ga0373925_0145246 3300037068 Bacteria 1859
73 Ga0373925_0257707 3300037068 Bacteria 1400
74 Ga0395900_0402629 3300037418 Bacteria 1332
75 Ga0466966_0080190 3300044684 Bacteria 2034
76 Ga0466961_0016860 3300044693 Bacteria 4694
77 Ga0466970_0010764 3300044765 Bacteria 4650
78 Ga0466957_0014056 3300044842 Bacteria 4657
79 Ga0466960_0074132 3300044901 Bacteria 1700
80 Ga0466958_0029354 3300045836 Bacteria 3264
81 Ga0466967_0061105 3300045976 Bacteria 3342
82 Ga0466967_0227108 3300045976 Bacteria 1776
83 Ga0495603_0165194 3300046455 Bacteria 1283
84 Ga0495629_0088152 3300046459 Bacteria 2164
85 Ga0495641_0017378 3300046461 Bacteria 3750
86 Ga0495651_0000402 3300046462 Bacteria 33417
87 Ga0495653_0080240 3300046463 Bacteria 2414
88 Ga0495650_0000070 3300046471 Bacteria 258497
89 Ga0495582_0014891 3300046473 Bacteria 4273
90 Ga0495639_0060672 3300046475 Bacteria 1733
91 Ga0495662_0051597 3300046476 Bacteria 1985
92 Ga0495608_0126601 3300046511 Bacteria 1636
93 Ga0495618_0068630 3300046514 Bacteria 2254
94 Ga0495628_0014246 3300046516 Bacteria 6671
95 Ga0495630_0046872 3300046517 Bacteria 3231
96 Ga0495666_0042306 3300046526 Bacteria 2203
97 Ga0495652_0000199 3300046529 Bacteria 69104
98 Ga0495652_0062200 3300046529 Bacteria 3148
99 Ga0495665_0037960 3300046531 Bacteria 2569
100 Ga0495640_0016843 3300046533 Bacteria 5462
101 Ga0495645_0027682 3300046543 Bacteria 4118
102 Ga0495622_0024107 3300046557 Bacteria 2840
103 Ga0495634_0025866 3300046642 Bacteria 4099
104 Ga0495635_0022576 3300046663 Bacteria 4384
105 Ga0495658_0084745 3300046683 Bacteria 1866
106 Ga0495613_0004979 3300046689 Bacteria 9978
107 Ga0495624_0086217 3300046690 Bacteria 1939
108 Ga0495600_0010894 3300046809 Bacteria 5655
109 Ga0495581_0047001 3300047315 Bacteria 2494
110 Ga0495680_0007401 3300047322 Bacteria 10068
111 Ga0495684_0031215 3300047471 Bacteria 4090
112 Ga0495614_0026877 3300048089 Bacteria 2481
113 Ga0496102_0034094 3300048905 Bacteria 4578
114 Ga0496109_0579352 3300048912 Bacteria 1058
115 Ga0496109_0602098 3300048912 Bacteria 1035
116 Ga0496116_0000133 3300048919 Bacteria 153938
117 Ga0496116_0044212 3300048919 Bacteria 3028
118 Ga0496117_0021748 3300048920 Bacteria 5175
119 Ga0496118_0005146 3300048921 Bacteria 14992
120 Ga0496118_0025802 3300048921 Bacteria 5026
121 Ga0496119_0001364 3300048922 Bacteria 29804
122 Ga0496121_0051185 3300048924 Bacteria 3481
123 Ga0496123_0026226 3300048926 Bacteria 4372
124 Ga0501031_0136262 3300049568 Bacteria 1604
125 Ga0501038_0109548 3300049574 Bacteria 2288
126 Ga0501047_0255945 3300049581 Bacteria 1599
127 Ga0501070_0367362 3300049586 Bacteria 1167
128 Ga0501080_0426356 3300049742 Bacteria 1191
129 Ga0501044_0052227 3300049823 Bacteria 4212
130 nmdc:mga05p37_10262_c1 3300050507 Bacteria 11124
131 nmdc:mga05p37_12220_c1 3300050507 Bacteria 10254
132 nmdc:mga09592_7461_c1 3300050508 Bacteria 8887
133 nmdc:mga0qj67_3075_c1 3300050509 Bacteria 11983
134 nmdc:mga06r32_235752_c1 3300050510 Bacteria 1817
135 nmdc:mga06r32_31878_c1 3300050510 Bacteria 4954
136 nmdc:mga0n895_236548_c1 3300050512 Bacteria 1854
137 nmdc:mga0rr50_494466_c1 3300050513 Bacteria 1040
138 nmdc:mga08x19_193183_c1 3300050514 Bacteria 1393
139 nmdc:mga0a205_298088_c1 3300050515 Bacteria 1486
140 Ga0495612_0009319 3300053078 Bacteria 3984
141 Ga0500556_0002032 3300053104 Bacteria 7049
142 Ga0500593_002242 3300053117 Bacteria 7061
143 Ga0500573_0010095 3300053140 Bacteria 5262
144 2508674198 2508501039 Bacteria 9978592
145 2515721578 2515154129 Bacteria 5584369
146 2516086026 2515154202 Bacteria 5471270
147 2558909950 2558860112 Bacteria 9931328
148 2585532815 2585427527 Bacteria 7273426
149 2585553818 2585427530 Bacteria 7383882
150 2644092903 2643221615 Bacteria 5487866
151 2644322516 2643221657 Bacteria 5490246
152 2676198737 2675902999 Bacteria 9438463
153 2689960021 2687453737 Bacteria 11203906
154 2753270274 2751185782 Bacteria 11227053
155 2799184676 2799112218 Bacteria 4315149
156 2812334897 2811994874 Bacteria 5367947
157 2816506478 2816332139 Bacteria 9138787
158 2819642623 2818991453 Bacteria 7181617
159 2857485021 2857481737 Bacteria 4761446
160 2874126224 2874123672 Bacteria 7238285
161 2884694549 2884693830 Bacteria 11273186
162 2891328560 2891326441 Bacteria 6439512
163 2895444454 2895442618 Bacteria 11027144
164 8002779301 8002775197 Bacteria 10728764
165 8002782155 8002775197 Bacteria 10728764
166 8002788382 8002784119 Bacteria 9788632
167 Ga0070663_100020019
168 Ga0068869_100191147
169 Ga0070667_100281064
170 Ga0070714_100008725
171 Ga0070714_100082476
172 Ga0070713_100120938
173 Ga0068853_100089347
174 Ga0068855_100021952
175 Ga0068854_100006968
176 Ga0068852_100005627
177 Ga0068860_100054642
178 Ga0081538_10043838
179 Ga0081540_1000101
180 Ga0070715_10030163
181 Ga0075428_100064872
182 Ga0075430_100002728
183 Ga0075431_100006804
184 Ga0075431_100190268
185 Ga0075433_10055854
186 Ga0075433_10060777
187 Ga0075429_100004712
188 Ga0075436_100034941
189 Ga0075436_100276037
190 Ga0111539_10315500
191 Ga0105247_10193132
192 Ga0114129_10010310
193 Ga0114129_10041540
194 Ga0114129_10829284
195 Ga0105241_10013221
196 Ga0105237_10052656
197 Ga0105237_10052687
198 Ga0157374_10083906
199 Ga0163162_10605438
200 Ga0157375_10165135
201 Ga0182008_10008518
202 Ga0182007_10001401
203 Ga0209677_102332
204 Ga0209233_1000169
205 Ga0207647_10003734
206 Ga0207684_10416418
207 Ga0207695_10001544
208 Ga0207671_10000122
209 Ga0207700_10212665
210 Ga0207664_10313539
211 Ga0207669_10335334
212 Ga0207689_10208559
213 Ga0207667_10099904
214 Ga0207640_10045462
215 Ga0207678_10032637
216 Ga0307509_10005722
217 Ga0307405_10068854
218 Ga0307410_10078898
219 Ga0307410_10246674
220 Ga0307406_10051641
221 Ga0307407_10026172
222 Ga0307412_10215341
223 Ga0307409_100000317
224 Ga0307416_100015474
225 Ga0307416_100017269
226 Ga0307411_10164281
227 Ga0307411_10374334
228 Ga0307415_100000078
229 Ga0307415_100207802
230 Ga0307507_10074943
231 Ga0373926_0033406
232 Ga0373934_0048722
233 Ga0373951_0000084
234 Ga0373945_0084215
235 Ga0373943_0053834
236 Ga0373943_0141044
237 Ga0373946_0125115
238 Ga0373925_0145246
239 Ga0373925_0257707
240 Ga0395900_0402629
241 Ga0466966_0080190
242 Ga0466961_0016860
243 Ga0466970_0010764
244 Ga0466957_0014056
245 Ga0466960_0074132
246 Ga0466958_0029354
247 Ga0466967_0061105
248 Ga0466967_0227108
249 Ga0495603_0165194
250 Ga0495629_0088152
251 Ga0495641_0017378
252 Ga0495651_0000402
253 Ga0495653_0080240
254 Ga0495650_0000070
255 Ga0495582_0014891
256 Ga0495639_0060672
257 Ga0495662_0051597
258 Ga0495608_0126601
259 Ga0495618_0068630
260 Ga0495628_0014246
261 Ga0495630_0046872
262 Ga0495666_0042306
263 Ga0495652_0000199
264 Ga0495652_0062200
265 Ga0495665_0037960
266 Ga0495640_0016843
267 Ga0495645_0027682
268 Ga0495622_0024107
269 Ga0495634_0025866
270 Ga0495635_0022576
271 Ga0495658_0084745
272 Ga0495613_0004979
273 Ga0495624_0086217
274 Ga0495600_0010894
275 Ga0495581_0047001
276 Ga0495680_0007401
277 Ga0495684_0031215
278 Ga0495614_0026877
279 Ga0496102_0034094
280 Ga0496109_0579352
281 Ga0496109_0602098
282 Ga0496116_0000133
283 Ga0496116_0044212
284 Ga0496117_0021748
285 Ga0496118_0005146
286 Ga0496118_0025802
287 Ga0496119_0001364
288 Ga0496121_0051185
289 Ga0496123_0026226
290 Ga0501031_0136262
291 Ga0501038_0109548
292 Ga0501047_0255945
293 Ga0501070_0367362
294 Ga0501080_0426356
295 Ga0501044_0052227
296 nmdc:mga05p37_10262_c1
297 nmdc:mga05p37_12220_c1
298 nmdc:mga09592_7461_c1
299 nmdc:mga0qj67_3075_c1
300 nmdc:mga06r32_235752_c1
301 nmdc:mga06r32_31878_c1
302 nmdc:mga0n895_236548_c1
303 nmdc:mga0rr50_494466_c1
304 nmdc:mga08x19_193183_c1
305 nmdc:mga0a205_298088_c1
306 Ga0495612_0009319
307 Ga0500556_0002032
308 Ga0500593_002242
309 Ga0500573_0010095
310 2508674198
311 2515721578
312 2516086026
313 2558909950
314 2585532815
315 2585553818
316 2644092903
317 2644322516
318 2676198737
319 2689960021
320 2753270274
321 2799184676
322 2812334897
323 2816506478
324 2819642623
325 2857485021
326 2874126224
327 2884694549
328 2891328560
329 2895444454
330 8002779301
331 8002782155
332 8002788382

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

259

338

0.98

PF12852

Cupin_6

Cupin

20

221

0.93

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

298

337

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9371 212 306
3lsg-assembly2.cif.gz_D the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9305 212 297
3lsg-assembly3.cif.gz_E the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9236 212 301
3mkl-assembly2.cif.gz_B crystal structure of dna-binding transcriptional dual regulator from escherichia coli k-12 0.9227 211 311
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.9143 206 308
ID Description Score Start End Superfamily
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9664 263 306 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9651 260 307 1.10.10.60
3lsgC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.955 263 306 1.10.10.60
af_P77379_178_282_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9547 210 311 1.10.10.60
3lsgB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9479 264 306 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A4R1WHT8-F1-model_v4 Helix-turn-helix protein 0.9563 211 317 GO:0003700
GO:0043565
AF-A0A172TL64-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9517 204 307 GO:0003700
GO:0006281
GO:0008168
GO:0008270
GO:0032259
GO:0043565
AF-A0A6N7FSM4-F1-model_v4 Helix-turn-helix domain-containing protein 0.9509 132 311 GO:0003700
GO:0043565
AF-A0A3R8J8M0-F1-model_v4 Helix-turn-helix domain-containing protein 0.9481 204 308 GO:0003700
GO:0006281
GO:0008168
GO:0008270
GO:0032259
GO:0043565
AF-A0A7R7EJ50-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9461 208 313 GO:0003700
GO:0043565

Map